From 1d4995ddec7284bd4e612e9ddca6058d94584830 Mon Sep 17 00:00:00 2001 From: Dave Date: Mon, 30 Oct 2023 12:57:54 +0100 Subject: [PATCH 01/21] start implementation of platform trace support --- .../configuration/specs/run_configuration.py | 3 ++ dlt/pipeline/__init__.py | 4 +-- dlt/pipeline/platform.py | 22 ++++++++++++++ dlt/pipeline/trace.py | 29 ++++++++++++------- 4 files changed, 45 insertions(+), 13 deletions(-) create mode 100644 dlt/pipeline/platform.py diff --git a/dlt/common/configuration/specs/run_configuration.py b/dlt/common/configuration/specs/run_configuration.py index 2ec3648dbe..73e05a03c4 100644 --- a/dlt/common/configuration/specs/run_configuration.py +++ b/dlt/common/configuration/specs/run_configuration.py @@ -27,6 +27,9 @@ class RunConfiguration(BaseConfiguration): request_max_retry_delay: float = 300 """Maximum delay between http request retries""" config_files_storage_path: str = "/run/config/" + """Platform connection""" + beacon_url: Optional[str] = None + beacon_token: Optional[str] = None __section__ = "runtime" diff --git a/dlt/pipeline/__init__.py b/dlt/pipeline/__init__.py index af7dd12294..012b03162d 100644 --- a/dlt/pipeline/__init__.py +++ b/dlt/pipeline/__init__.py @@ -241,8 +241,8 @@ def run( ) # plug default tracking module -from dlt.pipeline import trace, track -trace.TRACKING_MODULE = track +from dlt.pipeline import trace, track, platform +trace.TRACKING_MODULES = [track, platform] # setup default pipeline in the container Container()[PipelineContext] = PipelineContext(pipeline) diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py new file mode 100644 index 0000000000..1af1769a12 --- /dev/null +++ b/dlt/pipeline/platform.py @@ -0,0 +1,22 @@ +"""Implements SupportsTracking""" +from dlt.pipeline.trace import PipelineTrace, PipelineStepTrace, TPipelineStep, SupportsPipeline +from typing import Any + + +def _send_to_beacon(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline): + if not pipeline.runtime_config.beacon_token or not pipeline.runtime_config.beacon_url: + return + +def on_start_trace(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: + _send_to_beacon(trace, step, pipeline, None) + +def on_start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: + _send_to_beacon(trace, step, pipeline, None) + +def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any) -> None: + _send_to_beacon(trace, step, pipeline, step_info) + +def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: + _send_to_beacon(trace, None, pipeline, None) + + diff --git a/dlt/pipeline/trace.py b/dlt/pipeline/trace.py index 2ba71396f6..b833790813 100644 --- a/dlt/pipeline/trace.py +++ b/dlt/pipeline/trace.py @@ -122,6 +122,10 @@ def last_pipeline_step_trace(self, step_name: TPipelineStep) -> PipelineStepTrac if step.step == step_name: return step return None + + def asdict(self) -> DictStrAny: + """A dictionary representation of PipelineTrace that can be loaded with `dlt`""" + return dataclasses.asdict(self) @property def last_extract_info(self) -> ExtractInfo: @@ -162,22 +166,23 @@ def on_end_trace(self, trace: PipelineTrace, pipeline: SupportsPipeline) -> None ... -# plug in your own tracking module here -# TODO: that probably should be a list of modules / classes with all of them called -TRACKING_MODULE: SupportsTracking = None +# plug in your own tracking modules here +TRACKING_MODULES: SupportsTracking = None def start_trace(step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineTrace: trace = PipelineTrace(uniq_id(), pendulum.now(), steps=[]) - with suppress_and_warn(): - TRACKING_MODULE.on_start_trace(trace, step, pipeline) + for module in TRACKING_MODULES: + with suppress_and_warn(): + module.on_start_trace(trace, step, pipeline) return trace def start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineStepTrace: trace_step = PipelineStepTrace(uniq_id(), step, pendulum.now()) - with suppress_and_warn(): - TRACKING_MODULE.on_start_trace_step(trace, step, pipeline) + for module in TRACKING_MODULES: + with suppress_and_warn(): + module.on_start_trace_step(trace, step, pipeline) return trace_step @@ -211,16 +216,18 @@ def end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: Supp trace.resolved_config_values = list(resolved_values) trace.steps.append(step) - with suppress_and_warn(): - TRACKING_MODULE.on_end_trace_step(trace, step, pipeline, step_info) + for module in TRACKING_MODULES: + with suppress_and_warn(): + module.on_end_trace_step(trace, step, pipeline, step_info) def end_trace(trace: PipelineTrace, pipeline: SupportsPipeline, trace_path: str) -> None: trace.finished_at = pendulum.now() if trace_path: save_trace(trace_path, trace) - with suppress_and_warn(): - TRACKING_MODULE.on_end_trace(trace, pipeline) + for module in TRACKING_MODULES: + with suppress_and_warn(): + module.on_end_trace(trace, pipeline) def merge_traces(last_trace: PipelineTrace, new_trace: PipelineTrace) -> PipelineTrace: From 2a6bcb17e751b776ab81805f365bd52e4ea3f7c9 Mon Sep 17 00:00:00 2001 From: Dave Date: Mon, 30 Oct 2023 15:44:11 +0100 Subject: [PATCH 02/21] add beacon integration --- dlt/common/storages/load_storage.py | 4 +++- dlt/pipeline/platform.py | 25 +++++++++++++++++-------- dlt/pipeline/trace.py | 2 +- 3 files changed, 21 insertions(+), 10 deletions(-) diff --git a/dlt/common/storages/load_storage.py b/dlt/common/storages/load_storage.py index d8eee9b8d6..f4e698b18a 100644 --- a/dlt/common/storages/load_storage.py +++ b/dlt/common/storages/load_storage.py @@ -87,6 +87,7 @@ class LoadPackageInfo(NamedTuple): package_path: str state: TLoadPackageState schema_name: str + schema: Schema schema_update: TSchemaTables completed_at: datetime.datetime jobs: Dict[TJobState, List[LoadJobInfo]] @@ -110,6 +111,7 @@ def asdict(self) -> DictStrAny: table["columns"] = columns d.pop("schema_update") d["tables"] = tables + d["schema"] = self.schema.to_dict() return d def asstr(self, verbosity: int = 0) -> str: @@ -290,7 +292,7 @@ def get_load_package_info(self, load_id: str) -> LoadPackageInfo: jobs.append(self._read_job_file_info(state, file, package_created_at)) all_jobs[state] = jobs - return LoadPackageInfo(load_id, self.storage.make_full_path(package_path), package_state, schema.name, applied_update, package_created_at, all_jobs) + return LoadPackageInfo(load_id, self.storage.make_full_path(package_path), package_state, schema.name, schema, applied_update, package_created_at, all_jobs) def begin_schema_update(self, load_id: str) -> Optional[TSchemaTables]: package_path = self.get_normalized_package_path(load_id) diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py index 1af1769a12..869e37e69d 100644 --- a/dlt/pipeline/platform.py +++ b/dlt/pipeline/platform.py @@ -1,22 +1,31 @@ """Implements SupportsTracking""" -from dlt.pipeline.trace import PipelineTrace, PipelineStepTrace, TPipelineStep, SupportsPipeline from typing import Any +from dlt.sources.helpers import requests +from dlt.pipeline.trace import PipelineTrace, PipelineStepTrace, TPipelineStep, SupportsPipeline +from dlt.common import json + +count = 0 -def _send_to_beacon(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline): - if not pipeline.runtime_config.beacon_token or not pipeline.runtime_config.beacon_url: - return +def _send_to_beacon(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, some): + if pipeline.runtime_config.beacon_token and pipeline.runtime_config.beacon_url: + trace_dump = json.dumps(trace.asdict()) + url = f"{pipeline.runtime_config.beacon_url}/pipeline/{pipeline.runtime_config.beacon_token}/traces" + requests.put(url, json=trace_dump) def on_start_trace(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: - _send_to_beacon(trace, step, pipeline, None) + # _send_to_beacon(trace, step, pipeline, None) + pass def on_start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: - _send_to_beacon(trace, step, pipeline, None) + # _send_to_beacon(trace, step, pipeline, None) + pass def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any) -> None: - _send_to_beacon(trace, step, pipeline, step_info) + # _send_to_beacon(trace, step, pipeline, step_info) + pass def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: _send_to_beacon(trace, None, pipeline, None) - + pass diff --git a/dlt/pipeline/trace.py b/dlt/pipeline/trace.py index b833790813..e3e11e3b39 100644 --- a/dlt/pipeline/trace.py +++ b/dlt/pipeline/trace.py @@ -180,6 +180,7 @@ def start_trace(step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineTrac def start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineStepTrace: trace_step = PipelineStepTrace(uniq_id(), step, pendulum.now()) + trace.steps.append(trace_step) for module in TRACKING_MODULES: with suppress_and_warn(): module.on_start_trace_step(trace, step, pipeline) @@ -215,7 +216,6 @@ def end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: Supp ) , _RESOLVED_TRACES.values()) trace.resolved_config_values = list(resolved_values) - trace.steps.append(step) for module in TRACKING_MODULES: with suppress_and_warn(): module.on_end_trace_step(trace, step, pipeline, step_info) From fea80fa4d9677bf5d56c06eec50fbd9e71b91dea Mon Sep 17 00:00:00 2001 From: Dave Date: Wed, 1 Nov 2023 09:51:41 +0100 Subject: [PATCH 03/21] small changes --- dlt/common/configuration/specs/run_configuration.py | 3 +-- dlt/common/pipeline.py | 2 +- dlt/pipeline/platform.py | 10 +++++++--- 3 files changed, 9 insertions(+), 6 deletions(-) diff --git a/dlt/common/configuration/specs/run_configuration.py b/dlt/common/configuration/specs/run_configuration.py index 73e05a03c4..c8396b78b6 100644 --- a/dlt/common/configuration/specs/run_configuration.py +++ b/dlt/common/configuration/specs/run_configuration.py @@ -28,8 +28,7 @@ class RunConfiguration(BaseConfiguration): """Maximum delay between http request retries""" config_files_storage_path: str = "/run/config/" """Platform connection""" - beacon_url: Optional[str] = None - beacon_token: Optional[str] = None + beacon_dsn: Optional[str] = None __section__ = "runtime" diff --git a/dlt/common/pipeline.py b/dlt/common/pipeline.py index ddd9003799..d316763a56 100644 --- a/dlt/common/pipeline.py +++ b/dlt/common/pipeline.py @@ -54,7 +54,7 @@ def asdict(self) -> DictStrAny: """A dictionary representation of NormalizeInfo that can be loaded with `dlt`""" d = self._asdict() # list representation creates a nice table - d["row_counts"] = [(k, v) for k, v in self.row_counts.items()] + d["row_counts"] = [{"table_name": k, "count": v} for k, v in self.row_counts.items()] return d def asstr(self, verbosity: int = 0) -> str: diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py index 869e37e69d..ec476a82cd 100644 --- a/dlt/pipeline/platform.py +++ b/dlt/pipeline/platform.py @@ -8,10 +8,14 @@ count = 0 def _send_to_beacon(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, some): - if pipeline.runtime_config.beacon_token and pipeline.runtime_config.beacon_url: + if pipeline.runtime_config.beacon_dsn: trace_dump = json.dumps(trace.asdict()) - url = f"{pipeline.runtime_config.beacon_url}/pipeline/{pipeline.runtime_config.beacon_token}/traces" - requests.put(url, json=trace_dump) + requests.put(pipeline.runtime_config.beacon_dsn, data=trace_dump) + + trace_dump = json.dumps(trace.asdict(), pretty=True) + with open(f"trace-{count}.json", "w") as f: + f.write(trace_dump) + def on_start_trace(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: # _send_to_beacon(trace, step, pipeline, None) From f08b7958f2c60a0cdbe1972ca13b06baa69c69f4 Mon Sep 17 00:00:00 2001 From: Dave Date: Wed, 1 Nov 2023 12:43:01 +0100 Subject: [PATCH 04/21] fix tests --- dlt/pipeline/platform.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py index ec476a82cd..5a2a98041d 100644 --- a/dlt/pipeline/platform.py +++ b/dlt/pipeline/platform.py @@ -1,7 +1,7 @@ """Implements SupportsTracking""" from typing import Any +import requests -from dlt.sources.helpers import requests from dlt.pipeline.trace import PipelineTrace, PipelineStepTrace, TPipelineStep, SupportsPipeline from dlt.common import json From dc81f0576441fd7371eea093f4de5662eeea4aad Mon Sep 17 00:00:00 2001 From: Dave Date: Mon, 20 Nov 2023 14:01:59 +0100 Subject: [PATCH 05/21] add sending on threads to platform connection change config attribute to platform_dsn add exeuction context info to pipeline trace add pipeline name to pipeline trace --- .../configuration/specs/run_configuration.py | 2 +- dlt/common/runtime/exec_info.py | 21 ++++++++++-- dlt/common/runtime/segment.py | 21 ++++-------- dlt/common/runtime/typing.py | 18 +++++++++++ dlt/common/storages/load_storage.py | 7 ++-- dlt/pipeline/platform.py | 32 +++++++++++++------ dlt/pipeline/trace.py | 9 ++++-- 7 files changed, 75 insertions(+), 35 deletions(-) create mode 100644 dlt/common/runtime/typing.py diff --git a/dlt/common/configuration/specs/run_configuration.py b/dlt/common/configuration/specs/run_configuration.py index c8396b78b6..badc2335d7 100644 --- a/dlt/common/configuration/specs/run_configuration.py +++ b/dlt/common/configuration/specs/run_configuration.py @@ -28,7 +28,7 @@ class RunConfiguration(BaseConfiguration): """Maximum delay between http request retries""" config_files_storage_path: str = "/run/config/" """Platform connection""" - beacon_dsn: Optional[str] = None + platform_dsn: Optional[str] = None __section__ = "runtime" diff --git a/dlt/common/runtime/exec_info.py b/dlt/common/runtime/exec_info.py index ecb8376aa7..fb8a7def7d 100644 --- a/dlt/common/runtime/exec_info.py +++ b/dlt/common/runtime/exec_info.py @@ -1,13 +1,16 @@ import io import os import contextlib +import sys +import multiprocessing +import platform +from dlt.common.runtime.typing import TExecutionContext, TVersion, TExecInfoNames from dlt.common.typing import StrStr, StrAny, Literal, List from dlt.common.utils import filter_env_vars -from dlt.version import __version__ +from dlt.version import __version__, DLT_PKG_NAME -TExecInfoNames = Literal["kubernetes", "docker", "codespaces", "github_actions", "airflow", "notebook", "colab","aws_lambda","gcp_cloud_function"] # if one of these environment variables is set, we assume to be running in CI env CI_ENVIRONMENT_TELL = [ "bamboo.buildKey", @@ -163,4 +166,16 @@ def is_aws_lambda() -> bool: def is_gcp_cloud_function() -> bool: "Return True if the process is running in the serverless platform GCP Cloud Functions" - return os.environ.get("FUNCTION_NAME") is not None \ No newline at end of file + return os.environ.get("FUNCTION_NAME") is not None + + +def get_execution_context() -> TExecutionContext: + "Get execution context information" + return TExecutionContext( + ci_run=in_continuous_integration(), + python=sys.version.split(" ")[0], + cpu=multiprocessing.cpu_count(), + exec_info=exec_info_names(), + os=TVersion(name=platform.system(), version=platform.release()), + library=TVersion(name=DLT_PKG_NAME, version=__version__) + ) diff --git a/dlt/common/runtime/segment.py b/dlt/common/runtime/segment.py index b8d533cccb..af2edbcac0 100644 --- a/dlt/common/runtime/segment.py +++ b/dlt/common/runtime/segment.py @@ -2,12 +2,10 @@ # several code fragments come from https://github.com/RasaHQ/rasa/blob/main/rasa/telemetry.py import os -import sys -import multiprocessing + import atexit import base64 import requests -import platform from concurrent.futures import ThreadPoolExecutor from typing import Literal, Optional from dlt.common.configuration.paths import get_dlt_data_dir @@ -15,10 +13,10 @@ from dlt.common.runtime import logger from dlt.common.configuration.specs import RunConfiguration -from dlt.common.runtime.exec_info import exec_info_names, in_continuous_integration +from dlt.common.runtime.exec_info import get_execution_context, TExecutionContext from dlt.common.typing import DictStrAny, StrAny from dlt.common.utils import uniq_id -from dlt.version import __version__, DLT_PKG_NAME +from dlt.version import __version__ TEventCategory = Literal["pipeline", "command", "helper"] @@ -27,7 +25,7 @@ _WRITE_KEY: str = None _SEGMENT_REQUEST_TIMEOUT = (1.0, 1.0) # short connect & send timeouts _SEGMENT_ENDPOINT = "https://api.segment.io/v1/track" -_SEGMENT_CONTEXT: DictStrAny = None +_SEGMENT_CONTEXT: TExecutionContext = None def init_segment(config: RunConfiguration) -> None: @@ -150,7 +148,7 @@ def _segment_request_payload( } -def _default_context_fields() -> DictStrAny: +def _default_context_fields() -> TExecutionContext: """Return a dictionary that contains the default context values. Return: @@ -161,14 +159,7 @@ def _default_context_fields() -> DictStrAny: if not _SEGMENT_CONTEXT: # Make sure to update the example in docs/docs/telemetry/telemetry.mdx # if you change / add context - _SEGMENT_CONTEXT = { - "os": {"name": platform.system(), "version": platform.release()}, - "ci_run": in_continuous_integration(), - "python": sys.version.split(" ")[0], - "library": {"name": DLT_PKG_NAME, "version": __version__}, - "cpu": multiprocessing.cpu_count(), - "exec_info": exec_info_names() - } + _SEGMENT_CONTEXT = get_execution_context() # avoid returning the cached dict --> caller could modify the dictionary... # usually we would use `lru_cache`, but that doesn't return a dict copy and diff --git a/dlt/common/runtime/typing.py b/dlt/common/runtime/typing.py new file mode 100644 index 0000000000..d308782527 --- /dev/null +++ b/dlt/common/runtime/typing.py @@ -0,0 +1,18 @@ +from typing import Any, Callable, Dict, List, Literal, Optional, Sequence, Set, Type, TypedDict, NewType, Union, get_args + + +TExecInfoNames = Literal["kubernetes", "docker", "codespaces", "github_actions", "airflow", "notebook", "colab","aws_lambda","gcp_cloud_function"] + +class TVersion(TypedDict): + """TypeDict representing a library version""" + name: str + version: str + +class TExecutionContext(TypedDict): + """TypeDict representing the runtime context info""" + ci_run: bool + python: str + cpu: int + exec_info: List[TExecInfoNames] + library: TVersion + os: TVersion \ No newline at end of file diff --git a/dlt/common/storages/load_storage.py b/dlt/common/storages/load_storage.py index f4e698b18a..83e773579d 100644 --- a/dlt/common/storages/load_storage.py +++ b/dlt/common/storages/load_storage.py @@ -18,6 +18,7 @@ from dlt.common.configuration.accessors import config from dlt.common.exceptions import TerminalValueError from dlt.common.schema import Schema, TSchemaTables, TTableSchemaColumns +from dlt.common.schema.typing import TStoredSchema from dlt.common.storages.configuration import LoadStorageConfiguration from dlt.common.storages.versioned_storage import VersionedStorage from dlt.common.storages.data_item_storage import DataItemStorage @@ -87,7 +88,7 @@ class LoadPackageInfo(NamedTuple): package_path: str state: TLoadPackageState schema_name: str - schema: Schema + schema: TStoredSchema schema_update: TSchemaTables completed_at: datetime.datetime jobs: Dict[TJobState, List[LoadJobInfo]] @@ -111,7 +112,7 @@ def asdict(self) -> DictStrAny: table["columns"] = columns d.pop("schema_update") d["tables"] = tables - d["schema"] = self.schema.to_dict() + d["schema"] = self.schema return d def asstr(self, verbosity: int = 0) -> str: @@ -292,7 +293,7 @@ def get_load_package_info(self, load_id: str) -> LoadPackageInfo: jobs.append(self._read_job_file_info(state, file, package_created_at)) all_jobs[state] = jobs - return LoadPackageInfo(load_id, self.storage.make_full_path(package_path), package_state, schema.name, schema, applied_update, package_created_at, all_jobs) + return LoadPackageInfo(load_id, self.storage.make_full_path(package_path), package_state, schema.name, schema.to_dict(), applied_update, package_created_at, all_jobs) def begin_schema_update(self, load_id: str) -> Optional[TSchemaTables]: package_path = self.get_normalized_package_path(load_id) diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py index 5a2a98041d..461305dcc0 100644 --- a/dlt/pipeline/platform.py +++ b/dlt/pipeline/platform.py @@ -1,21 +1,34 @@ """Implements SupportsTracking""" from typing import Any import requests +from concurrent.futures import ThreadPoolExecutor from dlt.pipeline.trace import PipelineTrace, PipelineStepTrace, TPipelineStep, SupportsPipeline from dlt.common import json +from dlt.common.runtime import logger -count = 0 +_THREAD_POOL: ThreadPoolExecutor = None -def _send_to_beacon(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, some): - if pipeline.runtime_config.beacon_dsn: - trace_dump = json.dumps(trace.asdict()) - requests.put(pipeline.runtime_config.beacon_dsn, data=trace_dump) +def _init_thread_pool_if_needed() -> None: + global _THREAD_POOL + if not _THREAD_POOL: + _THREAD_POOL = ThreadPoolExecutor(1) - trace_dump = json.dumps(trace.asdict(), pretty=True) - with open(f"trace-{count}.json", "w") as f: - f.write(trace_dump) +def _send_to_platform(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: + if pipeline.runtime_config.platform_dsn: + def _future_send() -> None: + trace_dump = json.dumps(trace.asdict()) + response = requests.put(pipeline.runtime_config.platform_dsn, data=trace_dump) + if response.status_code != 200: + logger.debug("Failed to send trace to platform.") + + _init_thread_pool_if_needed() + _THREAD_POOL.submit(_future_send) + + # trace_dump = json.dumps(trace.asdict(), pretty=True) + # with open(f"trace.json", "w") as f: + # f.write(trace_dump) def on_start_trace(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: # _send_to_beacon(trace, step, pipeline, None) @@ -30,6 +43,5 @@ def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: S pass def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: - _send_to_beacon(trace, None, pipeline, None) - pass + _send_to_platform(trace, pipeline) diff --git a/dlt/pipeline/trace.py b/dlt/pipeline/trace.py index e3e11e3b39..fc64f4ec37 100644 --- a/dlt/pipeline/trace.py +++ b/dlt/pipeline/trace.py @@ -8,6 +8,7 @@ from dlt.common import pendulum from dlt.common.runtime.logger import suppress_and_warn +from dlt.common.runtime.exec_info import TExecutionContext, get_execution_context from dlt.common.configuration import is_secret_hint from dlt.common.configuration.utils import _RESOLVED_TRACES from dlt.common.pipeline import ExtractDataInfo, ExtractInfo, LoadInfo, NormalizeInfo, SupportsPipeline @@ -92,6 +93,8 @@ def asdict(self) -> DictStrAny: class PipelineTrace: """Pipeline runtime trace containing data on "extract", "normalize" and "load" steps and resolved config and secret values.""" transaction_id: str + pipeline_name: str + execution_context: TExecutionContext started_at: datetime.datetime steps: List[PipelineStepTrace] """A list of steps in the trace""" @@ -122,7 +125,7 @@ def last_pipeline_step_trace(self, step_name: TPipelineStep) -> PipelineStepTrac if step.step == step_name: return step return None - + def asdict(self) -> DictStrAny: """A dictionary representation of PipelineTrace that can be loaded with `dlt`""" return dataclasses.asdict(self) @@ -167,11 +170,11 @@ def on_end_trace(self, trace: PipelineTrace, pipeline: SupportsPipeline) -> None # plug in your own tracking modules here -TRACKING_MODULES: SupportsTracking = None +TRACKING_MODULES: List[SupportsTracking] = None def start_trace(step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineTrace: - trace = PipelineTrace(uniq_id(), pendulum.now(), steps=[]) + trace = PipelineTrace(uniq_id(), pipeline.pipeline_name, get_execution_context(), pendulum.now(), steps=[]) for module in TRACKING_MODULES: with suppress_and_warn(): module.on_start_trace(trace, step, pipeline) From d3109494d75b0b26dad27f4c76b8d944c4373a8a Mon Sep 17 00:00:00 2001 From: Dave Date: Mon, 20 Nov 2023 14:18:18 +0100 Subject: [PATCH 06/21] fix config test --- tests/common/configuration/test_configuration.py | 1 + 1 file changed, 1 insertion(+) diff --git a/tests/common/configuration/test_configuration.py b/tests/common/configuration/test_configuration.py index fc009d8444..cb974f554f 100644 --- a/tests/common/configuration/test_configuration.py +++ b/tests/common/configuration/test_configuration.py @@ -461,6 +461,7 @@ class _SecretCredentials(RunConfiguration): 'request_backoff_factor': 1, 'request_max_retry_delay': 300, 'config_files_storage_path': 'storage', + 'platform_dsn': None, "secret_value": None } assert dict(_SecretCredentials()) == expected_dict From 5758e0517a7734560ea279a137b3260e63af162b Mon Sep 17 00:00:00 2001 From: Dave Date: Mon, 20 Nov 2023 14:18:33 +0100 Subject: [PATCH 07/21] revert to adding tracestep on end tracestep --- dlt/pipeline/trace.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dlt/pipeline/trace.py b/dlt/pipeline/trace.py index fc64f4ec37..c702fa2655 100644 --- a/dlt/pipeline/trace.py +++ b/dlt/pipeline/trace.py @@ -183,7 +183,6 @@ def start_trace(step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineTrac def start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> PipelineStepTrace: trace_step = PipelineStepTrace(uniq_id(), step, pendulum.now()) - trace.steps.append(trace_step) for module in TRACKING_MODULES: with suppress_and_warn(): module.on_start_trace_step(trace, step, pipeline) @@ -219,6 +218,7 @@ def end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: Supp ) , _RESOLVED_TRACES.values()) trace.resolved_config_values = list(resolved_values) + trace.steps.append(step) for module in TRACKING_MODULES: with suppress_and_warn(): module.on_end_trace_step(trace, step, pipeline, step_info) From 03fcc21c476b4deaaeb2eced03c2efc293da321b Mon Sep 17 00:00:00 2001 From: Dave Date: Mon, 20 Nov 2023 14:58:20 +0100 Subject: [PATCH 08/21] add test for platform connection --- tests/pipeline/test_platform_connection.py | 41 ++++++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 tests/pipeline/test_platform_connection.py diff --git a/tests/pipeline/test_platform_connection.py b/tests/pipeline/test_platform_connection.py new file mode 100644 index 0000000000..39caa63872 --- /dev/null +++ b/tests/pipeline/test_platform_connection.py @@ -0,0 +1,41 @@ +import dlt +import os +import time +import requests_mock + +def test_platform_connection() -> None: + + mock_platform_url = "http://platform.com/endpoint" + + os.environ["RUNTIME__PLATFORM_DSN"] = mock_platform_url + + # simple pipeline + @dlt.source(name="platform_test") + def my_source(): + + @dlt.resource(name="test_resource") + def data(): + yield [1, 2, 3] + + return data() + + p = dlt.pipeline(destination="duckdb", pipeline_name="platform_test_pipeline") + + with requests_mock.mock() as m: + m.put(mock_platform_url, json={}, status_code=200) + p.run(my_source()) + + # sleep a bit and find trace in mock requests + time.sleep(1) + + trace_result = None + for call in m.request_history: + if call.url == mock_platform_url: + assert not trace_result, "Multiple calls to platform dsn endpoint" + trace_result = call.json() + + # basic check of trace result + assert trace_result + assert trace_result["pipeline_name"] == "platform_test_pipeline" + assert len(trace_result["steps"]) == 4 + assert trace_result["execution_context"]["library"]["name"] == "dlt" From 4b9adaec7a0c23a65a11c2db9a174a1ce39a7190 Mon Sep 17 00:00:00 2001 From: Dave Date: Tue, 21 Nov 2023 17:16:16 +0100 Subject: [PATCH 09/21] pr fixes --- .../configuration/specs/run_configuration.py | 2 +- dlt/common/managed_thread_pool.py | 27 ++++++ dlt/common/pipeline.py | 6 +- dlt/common/runtime/segment.py | 17 ++-- dlt/common/runtime/typing.py | 12 ++- dlt/common/storages/load_storage.py | 6 +- dlt/pipeline/pipeline.py | 84 +++++++++-------- dlt/pipeline/platform.py | 94 +++++++++++++++---- dlt/pipeline/trace.py | 12 +-- dlt/pipeline/track.py | 4 +- .../configuration/test_configuration.py | 2 +- tests/pipeline/test_platform_connection.py | 44 +++++++-- 12 files changed, 218 insertions(+), 92 deletions(-) create mode 100644 dlt/common/managed_thread_pool.py diff --git a/dlt/common/configuration/specs/run_configuration.py b/dlt/common/configuration/specs/run_configuration.py index badc2335d7..badf56bde2 100644 --- a/dlt/common/configuration/specs/run_configuration.py +++ b/dlt/common/configuration/specs/run_configuration.py @@ -28,7 +28,7 @@ class RunConfiguration(BaseConfiguration): """Maximum delay between http request retries""" config_files_storage_path: str = "/run/config/" """Platform connection""" - platform_dsn: Optional[str] = None + dlthub_dsn: Optional[TSecretStrValue] = None __section__ = "runtime" diff --git a/dlt/common/managed_thread_pool.py b/dlt/common/managed_thread_pool.py new file mode 100644 index 0000000000..a484294f3c --- /dev/null +++ b/dlt/common/managed_thread_pool.py @@ -0,0 +1,27 @@ +from typing import Optional + +import atexit +from concurrent.futures import ThreadPoolExecutor + +class ManagedThreadPool: + + def __init__(self, max_workers: int = 1) -> None: + self._max_workers = max_workers + self._thread_pool: Optional[ThreadPoolExecutor] = None + + def _create_thread_pool(self) -> None: + assert not self._thread_pool, "Thread pool already created" + self._thread_pool = ThreadPoolExecutor(self._max_workers) + # flush pool on exit + atexit.register(self.stop) + + @property + def thread_pool(self) -> ThreadPoolExecutor: + if not self._thread_pool: + self._create_thread_pool() + return self._thread_pool + + def stop(self, wait: bool = True) -> None: + if self._thread_pool: + self._thread_pool.shutdown(wait=wait) + self._thread_pool = None \ No newline at end of file diff --git a/dlt/common/pipeline.py b/dlt/common/pipeline.py index d316763a56..ebf6a5731c 100644 --- a/dlt/common/pipeline.py +++ b/dlt/common/pipeline.py @@ -2,7 +2,7 @@ import datetime # noqa: 251 import humanize import contextlib -from typing import Any, Callable, ClassVar, Dict, List, NamedTuple, Optional, Protocol, Sequence, TYPE_CHECKING, Tuple, TypedDict +from typing import Any, Callable, ClassVar, Dict, List, NamedTuple, Optional, Protocol, Sequence, TYPE_CHECKING, Tuple, TypedDict, Mapping from typing_extensions import NotRequired from dlt.common import pendulum, logger @@ -194,6 +194,10 @@ class SupportsPipeline(Protocol): def state(self) -> TPipelineState: """Returns dictionary with pipeline state""" + @property + def schemas(self) -> Mapping[str, Schema]: + """Mapping of all pipeline schemas""" + def set_local_state_val(self, key: str, value: Any) -> None: """Sets value in local state. Local state is not synchronized with destination.""" diff --git a/dlt/common/runtime/segment.py b/dlt/common/runtime/segment.py index af2edbcac0..b05fc902cf 100644 --- a/dlt/common/runtime/segment.py +++ b/dlt/common/runtime/segment.py @@ -11,6 +11,7 @@ from dlt.common.configuration.paths import get_dlt_data_dir from dlt.common.runtime import logger +from dlt.common.managed_thread_pool import ManagedThreadPool from dlt.common.configuration.specs import RunConfiguration from dlt.common.runtime.exec_info import get_execution_context, TExecutionContext @@ -20,7 +21,7 @@ TEventCategory = Literal["pipeline", "command", "helper"] -_THREAD_POOL: ThreadPoolExecutor = None +_THREAD_POOL: ManagedThreadPool = ManagedThreadPool(1) _SESSION: requests.Session = None _WRITE_KEY: str = None _SEGMENT_REQUEST_TIMEOUT = (1.0, 1.0) # short connect & send timeouts @@ -32,9 +33,8 @@ def init_segment(config: RunConfiguration) -> None: assert config.dlthub_telemetry_segment_write_key, "dlthub_telemetry_segment_write_key not present in RunConfiguration" # create thread pool to send telemetry to segment - global _THREAD_POOL, _WRITE_KEY, _SESSION - if not _THREAD_POOL: - _THREAD_POOL = ThreadPoolExecutor(1) + global _WRITE_KEY, _SESSION + if not _SESSION: _SESSION = requests.Session() # flush pool on exit atexit.register(_at_exit_cleanup) @@ -84,10 +84,9 @@ def before_send(event: DictStrAny) -> Optional[DictStrAny]: def _at_exit_cleanup() -> None: - global _THREAD_POOL, _SESSION, _WRITE_KEY, _SEGMENT_CONTEXT - if _THREAD_POOL: - _THREAD_POOL.shutdown(wait=True) - _THREAD_POOL = None + global _SESSION, _WRITE_KEY, _SEGMENT_CONTEXT + if _SESSION: + _THREAD_POOL.stop(True) _SESSION.close() _SESSION = None _WRITE_KEY = None @@ -211,4 +210,4 @@ def _future_send() -> None: f"Segment telemetry request returned a failure. Response: {data}" ) - _THREAD_POOL.submit(_future_send) + _THREAD_POOL.thread_pool.submit(_future_send) diff --git a/dlt/common/runtime/typing.py b/dlt/common/runtime/typing.py index d308782527..39def406f8 100644 --- a/dlt/common/runtime/typing.py +++ b/dlt/common/runtime/typing.py @@ -1,7 +1,17 @@ from typing import Any, Callable, Dict, List, Literal, Optional, Sequence, Set, Type, TypedDict, NewType, Union, get_args -TExecInfoNames = Literal["kubernetes", "docker", "codespaces", "github_actions", "airflow", "notebook", "colab","aws_lambda","gcp_cloud_function"] +TExecInfoNames = Literal[ + "kubernetes", + "docker", + "codespaces", + "github_actions", + "airflow", + "notebook", + "colab", + "aws_lambda", + "gcp_cloud_function" + ] class TVersion(TypedDict): """TypeDict representing a library version""" diff --git a/dlt/common/storages/load_storage.py b/dlt/common/storages/load_storage.py index 83e773579d..854b4ba5a6 100644 --- a/dlt/common/storages/load_storage.py +++ b/dlt/common/storages/load_storage.py @@ -88,7 +88,7 @@ class LoadPackageInfo(NamedTuple): package_path: str state: TLoadPackageState schema_name: str - schema: TStoredSchema + schema_hash: str schema_update: TSchemaTables completed_at: datetime.datetime jobs: Dict[TJobState, List[LoadJobInfo]] @@ -112,7 +112,7 @@ def asdict(self) -> DictStrAny: table["columns"] = columns d.pop("schema_update") d["tables"] = tables - d["schema"] = self.schema + d["schema_hash"] = self.schema_hash return d def asstr(self, verbosity: int = 0) -> str: @@ -293,7 +293,7 @@ def get_load_package_info(self, load_id: str) -> LoadPackageInfo: jobs.append(self._read_job_file_info(state, file, package_created_at)) all_jobs[state] = jobs - return LoadPackageInfo(load_id, self.storage.make_full_path(package_path), package_state, schema.name, schema.to_dict(), applied_update, package_created_at, all_jobs) + return LoadPackageInfo(load_id, self.storage.make_full_path(package_path), package_state, schema.name, schema.version_hash, applied_update, package_created_at, all_jobs) def begin_schema_update(self, load_id: str) -> Optional[TSchemaTables]: package_path = self.get_normalized_package_path(load_id) diff --git a/dlt/pipeline/pipeline.py b/dlt/pipeline/pipeline.py index 465eccfdb6..0e8169051a 100644 --- a/dlt/pipeline/pipeline.py +++ b/dlt/pipeline/pipeline.py @@ -4,7 +4,7 @@ from contextlib import contextmanager from functools import wraps from collections.abc import Sequence as C_Sequence -from typing import Any, Callable, ClassVar, List, Iterator, Optional, Sequence, Tuple, cast, get_type_hints, ContextManager +from typing import Any, Callable, ClassVar, List, Iterator, Optional, Sequence, Tuple, cast, get_type_hints, ContextManager, Mapping from concurrent.futures import Executor from dlt import version @@ -89,48 +89,52 @@ def _wrap(self: "Pipeline", *args: Any, **kwargs: Any) -> Any: return _wrap # type: ignore -def with_runtime_trace(f: TFun) -> TFun: +def with_runtime_trace(send_state: bool = False) -> Callable[[TFun], TFun]: - @wraps(f) - def _wrap(self: "Pipeline", *args: Any, **kwargs: Any) -> Any: - trace: PipelineTrace = self._trace - trace_step: PipelineStepTrace = None - step_info: Any = None - is_new_trace = self._trace is None and self.config.enable_runtime_trace + def decorator(f: TFun) -> TFun: - # create a new trace if we enter a traced function and there's no current trace - if is_new_trace: - self._trace = trace = start_trace(cast(TPipelineStep, f.__name__), self) + @wraps(f) + def _wrap(self: "Pipeline", *args: Any, **kwargs: Any) -> Any: + trace: PipelineTrace = self._trace + trace_step: PipelineStepTrace = None + step_info: Any = None + is_new_trace = self._trace is None and self.config.enable_runtime_trace - try: - # start a trace step for wrapped function - if trace: - trace_step = start_trace_step(trace, cast(TPipelineStep, f.__name__), self) + # create a new trace if we enter a traced function and there's no current trace + if is_new_trace: + self._trace = trace = start_trace(cast(TPipelineStep, f.__name__), self) - step_info = f(self, *args, **kwargs) - return step_info - except Exception as ex: - step_info = ex # step info is an exception - raise - finally: try: - if trace_step: - # if there was a step, finish it - end_trace_step(self._trace, trace_step, self, step_info) - if is_new_trace: - assert trace is self._trace, f"Messed up trace reference {id(self._trace)} vs {id(trace)}" - end_trace(trace, self, self._pipeline_storage.storage_path) + # start a trace step for wrapped function + if trace: + trace_step = start_trace_step(trace, cast(TPipelineStep, f.__name__), self) + + step_info = f(self, *args, **kwargs) + return step_info + except Exception as ex: + step_info = ex # step info is an exception + raise finally: - # always end trace - if is_new_trace: - assert self._trace == trace, f"Messed up trace reference {id(self._trace)} vs {id(trace)}" - # if we end new trace that had only 1 step, add it to previous trace - # this way we combine several separate calls to extract, normalize, load as single trace - # the trace of "run" has many steps and will not be merged - self._last_trace = merge_traces(self._last_trace, trace) - self._trace = None + try: + if trace_step: + # if there was a step, finish it + end_trace_step(self._trace, trace_step, self, step_info, send_state) + if is_new_trace: + assert trace is self._trace, f"Messed up trace reference {id(self._trace)} vs {id(trace)}" + end_trace(trace, self, self._pipeline_storage.storage_path, send_state) + finally: + # always end trace + if is_new_trace: + assert self._trace == trace, f"Messed up trace reference {id(self._trace)} vs {id(trace)}" + # if we end new trace that had only 1 step, add it to previous trace + # this way we combine several separate calls to extract, normalize, load as single trace + # the trace of "run" has many steps and will not be merged + self._last_trace = merge_traces(self._last_trace, trace) + self._trace = None - return _wrap # type: ignore + return _wrap # type: ignore + + return decorator def with_config_section(sections: Tuple[str, ...]) -> Callable[[TFun], TFun]: @@ -253,7 +257,7 @@ def drop(self) -> "Pipeline": self.runtime_config ) - @with_runtime_trace + @with_runtime_trace() @with_schemas_sync # this must precede with_state_sync @with_state_sync(may_extract_state=True) @with_config_section((known_sections.EXTRACT,)) @@ -293,7 +297,7 @@ def extract( # TODO: provide metrics from extractor raise PipelineStepFailed(self, "extract", exc, ExtractInfo(describe_extract_data(data))) from exc - @with_runtime_trace + @with_runtime_trace() @with_schemas_sync @with_config_section((known_sections.NORMALIZE,)) def normalize(self, workers: int = 1, loader_file_format: TLoaderFileFormat = None) -> NormalizeInfo: @@ -326,7 +330,7 @@ def normalize(self, workers: int = 1, loader_file_format: TLoaderFileFormat = No except Exception as n_ex: raise PipelineStepFailed(self, "normalize", n_ex, normalize.get_normalize_info()) from n_ex - @with_runtime_trace + @with_runtime_trace() @with_schemas_sync @with_state_sync() @with_config_section((known_sections.LOAD,)) @@ -379,7 +383,7 @@ def load( except Exception as l_ex: raise PipelineStepFailed(self, "load", l_ex, self._get_load_info(load)) from l_ex - @with_runtime_trace + @with_runtime_trace(send_state=True) @with_config_section(("run",)) def run( self, diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py index 461305dcc0..136239a0a8 100644 --- a/dlt/pipeline/platform.py +++ b/dlt/pipeline/platform.py @@ -1,47 +1,101 @@ """Implements SupportsTracking""" -from typing import Any +from typing import Any, cast, TypedDict, List import requests -from concurrent.futures import ThreadPoolExecutor +from dlt.common.managed_thread_pool import ManagedThreadPool +from urllib.parse import urljoin from dlt.pipeline.trace import PipelineTrace, PipelineStepTrace, TPipelineStep, SupportsPipeline from dlt.common import json from dlt.common.runtime import logger +from dlt.common.pipeline import LoadInfo +from dlt.common.schema.typing import TStoredSchema -_THREAD_POOL: ThreadPoolExecutor = None +_THREAD_POOL: ManagedThreadPool = ManagedThreadPool(1) +TRACE_URL_SUFFIX = "/trace" +STATE_URL_SUFFIX = "/state" -def _init_thread_pool_if_needed() -> None: - global _THREAD_POOL - if not _THREAD_POOL: - _THREAD_POOL = ThreadPoolExecutor(1) +class TSchemaSyncPayload(TypedDict): + pipeline_name: str + destination_name: str + destination_displayable_credentials: str + destination_fingerprint: str + dataset_name: str + schemas: List[TStoredSchema] -def _send_to_platform(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: - if pipeline.runtime_config.platform_dsn: +def _send_trace_to_platform(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: + """ + Send the full trace after a run operation to the platform + TODO: Migrate this to open telemetry in the next iteration + """ + if not pipeline.runtime_config.dlthub_dsn: + return - def _future_send() -> None: + def _future_send() -> None: + try: trace_dump = json.dumps(trace.asdict()) - response = requests.put(pipeline.runtime_config.platform_dsn, data=trace_dump) + url = pipeline.runtime_config.dlthub_dsn + TRACE_URL_SUFFIX + response = requests.put(url, data=trace_dump) if response.status_code != 200: - logger.debug("Failed to send trace to platform.") + logger.debug(f"Failed to send trace to platform, response code: {response.status_code}") + except Exception as e: + logger.debug(f"Exception while sending trace to platform: {e}") - _init_thread_pool_if_needed() - _THREAD_POOL.submit(_future_send) + _THREAD_POOL.thread_pool.submit(_future_send) # trace_dump = json.dumps(trace.asdict(), pretty=True) # with open(f"trace.json", "w") as f: # f.write(trace_dump) +def _sync_schemas_to_platform(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: + if not pipeline.runtime_config.dlthub_dsn: + return + + # sync only if load step was processed + load_info: LoadInfo = None + for step in trace.steps: + if step.step == "load": + load_info = cast(LoadInfo, step.step_info) + + if not load_info: + return + + payload = TSchemaSyncPayload( + pipeline_name=pipeline.pipeline_name, + destination_name=load_info.destination_name, + destination_displayable_credentials=load_info.destination_displayable_credentials, + destination_fingerprint=load_info.destination_fingerprint, + dataset_name=load_info.dataset_name, + schemas=[] + ) + + # attach all schemas + for schema_name in pipeline.schemas: + schema = pipeline.schemas[schema_name] + payload["schemas"].append(schema.to_dict()) + + def _future_send() -> None: + try: + url = pipeline.runtime_config.dlthub_dsn + STATE_URL_SUFFIX + response = requests.put(url, data=json.dumps(payload)) + if response.status_code != 200: + logger.debug(f"Failed to send state to platform, response code: {response.status_code}") + except Exception as e: + logger.debug(f"Exception while sending state to platform: {e}") + + _THREAD_POOL.thread_pool.submit(_future_send) + def on_start_trace(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: - # _send_to_beacon(trace, step, pipeline, None) pass def on_start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: - # _send_to_beacon(trace, step, pipeline, None) pass -def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any) -> None: - # _send_to_beacon(trace, step, pipeline, step_info) +def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any, send_state: bool) -> None: pass -def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: - _send_to_platform(trace, pipeline) +def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline, send_state: bool) -> None: + _send_trace_to_platform(trace, pipeline) + if send_state: + # also sync schemas to dlthub + _sync_schemas_to_platform(trace, pipeline) diff --git a/dlt/pipeline/trace.py b/dlt/pipeline/trace.py index c702fa2655..1fb04cda2e 100644 --- a/dlt/pipeline/trace.py +++ b/dlt/pipeline/trace.py @@ -162,10 +162,10 @@ def on_start_trace(self, trace: PipelineTrace, step: TPipelineStep, pipeline: Su def on_start_trace_step(self, trace: PipelineTrace, step: TPipelineStep, pipeline: SupportsPipeline) -> None: ... - def on_end_trace_step(self, trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any) -> None: + def on_end_trace_step(self, trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any, send_state: bool) -> None: ... - def on_end_trace(self, trace: PipelineTrace, pipeline: SupportsPipeline) -> None: + def on_end_trace(self, trace: PipelineTrace, pipeline: SupportsPipeline, send_state: bool) -> None: ... @@ -189,7 +189,7 @@ def start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: Suppor return trace_step -def end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any) -> None: +def end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any, send_state: bool) -> None: # saves runtime trace of the pipeline if isinstance(step_info, PipelineStepFailed): step_exception = str(step_info) @@ -221,16 +221,16 @@ def end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: Supp trace.steps.append(step) for module in TRACKING_MODULES: with suppress_and_warn(): - module.on_end_trace_step(trace, step, pipeline, step_info) + module.on_end_trace_step(trace, step, pipeline, step_info, send_state) -def end_trace(trace: PipelineTrace, pipeline: SupportsPipeline, trace_path: str) -> None: +def end_trace(trace: PipelineTrace, pipeline: SupportsPipeline, trace_path: str, send_state: bool) -> None: trace.finished_at = pendulum.now() if trace_path: save_trace(trace_path, trace) for module in TRACKING_MODULES: with suppress_and_warn(): - module.on_end_trace(trace, pipeline) + module.on_end_trace(trace, pipeline, send_state) def merge_traces(last_trace: PipelineTrace, new_trace: PipelineTrace) -> PipelineTrace: diff --git a/dlt/pipeline/track.py b/dlt/pipeline/track.py index 07e9a2d137..490d98e794 100644 --- a/dlt/pipeline/track.py +++ b/dlt/pipeline/track.py @@ -75,7 +75,7 @@ def on_start_trace_step(trace: PipelineTrace, step: TPipelineStep, pipeline: Sup _add_sentry_tags(span, pipeline) -def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any) -> None: +def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: SupportsPipeline, step_info: Any, send_state: bool) -> None: if pipeline.runtime_config.sentry_dsn: # print(f"---END SENTRY SPAN {trace.transaction_id}:{step.span_id}: {step} SCOPE: {Hub.current.scope}") with contextlib.suppress(Exception): @@ -103,7 +103,7 @@ def on_end_trace_step(trace: PipelineTrace, step: PipelineStepTrace, pipeline: S dlthub_telemetry_track("pipeline", step.step, props) -def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline) -> None: +def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline, send_state: bool) -> None: if pipeline.runtime_config.sentry_dsn: # print(f"---END SENTRY TX: {trace.transaction_id} SCOPE: {Hub.current.scope}") with contextlib.suppress(Exception): diff --git a/tests/common/configuration/test_configuration.py b/tests/common/configuration/test_configuration.py index cb974f554f..f902f2ac50 100644 --- a/tests/common/configuration/test_configuration.py +++ b/tests/common/configuration/test_configuration.py @@ -461,7 +461,7 @@ class _SecretCredentials(RunConfiguration): 'request_backoff_factor': 1, 'request_max_retry_delay': 300, 'config_files_storage_path': 'storage', - 'platform_dsn': None, + 'dlthub_dsn': None, "secret_value": None } assert dict(_SecretCredentials()) == expected_dict diff --git a/tests/pipeline/test_platform_connection.py b/tests/pipeline/test_platform_connection.py index 39caa63872..4826e5a09b 100644 --- a/tests/pipeline/test_platform_connection.py +++ b/tests/pipeline/test_platform_connection.py @@ -3,14 +3,20 @@ import time import requests_mock +TRACE_URL_SUFFIX = "/trace" +STATE_URL_SUFFIX = "/state" + def test_platform_connection() -> None: mock_platform_url = "http://platform.com/endpoint" - os.environ["RUNTIME__PLATFORM_DSN"] = mock_platform_url + os.environ["RUNTIME__DLTHUB_DSN"] = mock_platform_url + + trace_url = mock_platform_url + TRACE_URL_SUFFIX + state_url = mock_platform_url + STATE_URL_SUFFIX # simple pipeline - @dlt.source(name="platform_test") + @dlt.source(name="first_source") def my_source(): @dlt.resource(name="test_resource") @@ -19,23 +25,45 @@ def data(): return data() - p = dlt.pipeline(destination="duckdb", pipeline_name="platform_test_pipeline") + @dlt.source(name="second_source") + def my_source_2(): + + @dlt.resource(name="test_resource") + def data(): + yield [1, 2, 3] + + return data() + + p = dlt.pipeline(destination="duckdb", pipeline_name="platform_test_pipeline", dataset_name="platform_test_dataset") with requests_mock.mock() as m: m.put(mock_platform_url, json={}, status_code=200) - p.run(my_source()) + p.run([my_source(), my_source_2()]) # sleep a bit and find trace in mock requests - time.sleep(1) + time.sleep(2) trace_result = None + state_result = None for call in m.request_history: - if call.url == mock_platform_url: - assert not trace_result, "Multiple calls to platform dsn endpoint" + if call.url == trace_url: + assert not trace_result, "Multiple calls to trace endpoint" trace_result = call.json() + if call.url == state_url: + assert not state_result, "Multiple calls to state endpoint" + state_result = call.json() + # basic check of trace result - assert trace_result + assert trace_result, "no trace" assert trace_result["pipeline_name"] == "platform_test_pipeline" assert len(trace_result["steps"]) == 4 assert trace_result["execution_context"]["library"]["name"] == "dlt" + + # basic check of state result + assert state_result, "no state update" + assert state_result["pipeline_name"] == "platform_test_pipeline" + assert state_result["dataset_name"] == "platform_test_dataset" + assert len(state_result["schemas"]) == 2 + assert state_result["schemas"][0]["name"] == "first_source" + assert state_result["schemas"][1]["name"] == "second_source" From 41942840dca7b1d2f0c55eddb873e16f8c3563b0 Mon Sep 17 00:00:00 2001 From: Dave Date: Tue, 21 Nov 2023 17:20:51 +0100 Subject: [PATCH 10/21] fix tests --- tests/pipeline/test_platform_connection.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/tests/pipeline/test_platform_connection.py b/tests/pipeline/test_platform_connection.py index 4826e5a09b..86f0975d1d 100644 --- a/tests/pipeline/test_platform_connection.py +++ b/tests/pipeline/test_platform_connection.py @@ -65,5 +65,4 @@ def data(): assert state_result["pipeline_name"] == "platform_test_pipeline" assert state_result["dataset_name"] == "platform_test_dataset" assert len(state_result["schemas"]) == 2 - assert state_result["schemas"][0]["name"] == "first_source" - assert state_result["schemas"][1]["name"] == "second_source" + assert {state_result["schemas"][0]["name"], state_result["schemas"][1]["name"]} == {"first_source", "second_source"} From 1770d0d5553fc27bb5cbd0f820428dde5aa09e70 Mon Sep 17 00:00:00 2001 From: Dave Date: Tue, 21 Nov 2023 17:25:41 +0100 Subject: [PATCH 11/21] fix linting --- tests/helpers/streamlit_tests/test_streamlit_show_resources.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/helpers/streamlit_tests/test_streamlit_show_resources.py b/tests/helpers/streamlit_tests/test_streamlit_show_resources.py index fcf232ea76..e31a5d5cbb 100644 --- a/tests/helpers/streamlit_tests/test_streamlit_show_resources.py +++ b/tests/helpers/streamlit_tests/test_streamlit_show_resources.py @@ -57,7 +57,7 @@ def test_multiple_resources_pipeline(): ) load_info = pipeline.run([source1(10), source2(20)]) - source1_schema = load_info.pipeline.schemas.get("source1") # type: ignore[attr-defined] + source1_schema = load_info.pipeline.schemas.get("source1") assert load_info.pipeline.schema_names == ["source2", "source1"] # type: ignore[attr-defined] From 83279f2a82747f72674ce98e267da24dd4dc20bd Mon Sep 17 00:00:00 2001 From: Dave Date: Wed, 22 Nov 2023 12:43:19 +0100 Subject: [PATCH 12/21] add configurable docusaurus root url --- docs/website/docusaurus.config.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/website/docusaurus.config.js b/docs/website/docusaurus.config.js index ff24dff5e0..302210c4b8 100644 --- a/docs/website/docusaurus.config.js +++ b/docs/website/docusaurus.config.js @@ -10,7 +10,7 @@ const config = { title: 'dlt Docs', tagline: 'data load tool', url: 'https://dlthub.com', - baseUrl: '/docs', + baseUrl: process.env.DOCUSAURUS_BASE_URL || '/docs', onBrokenLinks: 'throw', onBrokenMarkdownLinks: 'throw', favicon: 'img/favicon.ico', From bd3461d6aef0ed4da196f3ddeb0a209efae2ae60 Mon Sep 17 00:00:00 2001 From: Dave Date: Wed, 22 Nov 2023 13:42:54 +0100 Subject: [PATCH 13/21] add current version as tag to docusaurus --- .../examples/incremental_loading/index.md | 5 ++-- docs/website/docs/getting-started.md | 2 +- .../docs/running-in-production/alerting.md | 2 +- docs/website/docusaurus.config.js | 2 ++ docs/website/package-lock.json | 23 ++++++++++++++++++- docs/website/package.json | 10 ++++---- docs/website/src/css/custom.css | 13 ++++++++++- docs/website/tools/update_version_env.js | 17 ++++++++++++++ 8 files changed, 63 insertions(+), 11 deletions(-) create mode 100644 docs/website/tools/update_version_env.js diff --git a/docs/website/docs/examples/incremental_loading/index.md b/docs/website/docs/examples/incremental_loading/index.md index 629138dc11..47924c16f6 100644 --- a/docs/website/docs/examples/incremental_loading/index.md +++ b/docs/website/docs/examples/incremental_loading/index.md @@ -32,13 +32,12 @@ We'll learn: ```py -from typing import Iterator, Optional, Dict, Any, Tuple +from typing import Optional, Dict, Any, Tuple import dlt from dlt.common import pendulum from dlt.common.time import ensure_pendulum_datetime -from dlt.common.typing import TDataItem, TDataItems, TAnyDateTime -from dlt.extract.source import DltResource +from dlt.common.typing import TAnyDateTime from dlt.sources.helpers.requests import client diff --git a/docs/website/docs/getting-started.md b/docs/website/docs/getting-started.md index cd3f2cc69d..dbe728d783 100644 --- a/docs/website/docs/getting-started.md +++ b/docs/website/docs/getting-started.md @@ -522,7 +522,7 @@ Below we extract text from PDFs and load it to [Weaviate](dlt-ecosystem/destinat import os import dlt -from dlt.destinations.weaviate import weaviate_adapter +from dlt.destinations.impl.weaviate import weaviate_adapter from PyPDF2 import PdfReader diff --git a/docs/website/docs/running-in-production/alerting.md b/docs/website/docs/running-in-production/alerting.md index 814537952b..65a9d05eae 100644 --- a/docs/website/docs/running-in-production/alerting.md +++ b/docs/website/docs/running-in-production/alerting.md @@ -40,5 +40,5 @@ receiving rich information on executed pipelines, including encountered errors a ## Slack -Read [here](/docs/running-in-production/running#using-slack-to-send-messages) about how to send +Read [here](./running#using-slack-to-send-messages) about how to send messages to Slack. diff --git a/docs/website/docusaurus.config.js b/docs/website/docusaurus.config.js index 302210c4b8..8cf688b70a 100644 --- a/docs/website/docusaurus.config.js +++ b/docs/website/docusaurus.config.js @@ -1,5 +1,6 @@ // @ts-check // Note: type annotations allow type checking and IDEs autocompletion +require('dotenv').config() const lightCodeTheme = require('prism-react-renderer/themes/dracula'); // const lightCodeTheme = require('prism-react-renderer/themes/github'); @@ -77,6 +78,7 @@ const config = { href: 'https://dlthub.com' }, items: [ + { label: 'dlt ' + (process.env.DOCUSAURUS_DLT_VERSION || "master"), position: 'left', href: 'https://github.com/dlt-hub/dlt', className: 'version-navbar' }, { type: 'doc', docId: 'intro', diff --git a/docs/website/package-lock.json b/docs/website/package-lock.json index 77d41c8ed3..5962743ff2 100644 --- a/docs/website/package-lock.json +++ b/docs/website/package-lock.json @@ -19,10 +19,13 @@ "react": "^17.0.2", "react-dom": "^17.0.2", "react-twitter-embed": "^4.0.4", - "string-dedent": "^3.0.1" + "string-dedent": "^3.0.1", + "dotenv": "^16.3.1", + "toml": "^3.0.0" }, "devDependencies": { "@docusaurus/module-type-aliases": "2.4.1" + }, "engines": { "node": ">=16.14" @@ -5707,6 +5710,18 @@ "node": ">=8" } }, + "node_modules/dotenv": { + "version": "16.3.1", + "resolved": "https://registry.npmjs.org/dotenv/-/dotenv-16.3.1.tgz", + "integrity": "sha512-IPzF4w4/Rd94bA9imS68tZBaYyBWSCE47V1RGuMrB94iyTOIEwRmVL2x/4An+6mETpLrKJ5hQkB8W4kFAadeIQ==", + "dev": true, + "engines": { + "node": ">=12" + }, + "funding": { + "url": "https://github.com/motdotla/dotenv?sponsor=1" + } + }, "node_modules/duplexer": { "version": "0.1.2", "resolved": "https://registry.npmjs.org/duplexer/-/duplexer-0.1.2.tgz", @@ -11508,6 +11523,12 @@ "node": ">=0.6" } }, + "node_modules/toml": { + "version": "3.0.0", + "resolved": "https://registry.npmjs.org/toml/-/toml-3.0.0.tgz", + "integrity": "sha512-y/mWCZinnvxjTKYhJ+pYxwD0mRLVvOtdS2Awbgxln6iEnt4rk0yBxeSBHkGJcPucRiG0e55mwWp+g/05rsrd6w==", + "dev": true + }, "node_modules/totalist": { "version": "3.0.1", "resolved": "https://registry.npmjs.org/totalist/-/totalist-3.0.1.tgz", diff --git a/docs/website/package.json b/docs/website/package.json index 77ecbcc9dd..5e824dbb35 100644 --- a/docs/website/package.json +++ b/docs/website/package.json @@ -4,10 +4,10 @@ "private": true, "scripts": { "docusaurus": "docusaurus", - "start": "PYTHONPATH=. poetry run pydoc-markdown && node tools/update_snippets.js && docusaurus start", + "start": "PYTHONPATH=. poetry run pydoc-markdown && node tools/update_snippets.js && node tools/update_version_env.js && docusaurus start", "watch-snippets": "node tools/update_snippets.js --watch", - "build": "PYTHONPATH=. poetry run pydoc-markdown && node tools/update_snippets.js && docusaurus build", - "build:netlify": "PYTHONPATH=. pydoc-markdown && node tools/update_snippets.js && docusaurus build --out-dir build/docs", + "build": "PYTHONPATH=. poetry run pydoc-markdown && node tools/update_snippets.js && node tools/update_version_env.js && docusaurus build", + "build:netlify": "PYTHONPATH=. pydoc-markdown && node tools/update_snippets.js && node tools/update_version_env.js && docusaurus build --out-dir build/docs", "swizzle": "docusaurus swizzle", "clear": "docusaurus clear", "serve": "docusaurus serve", @@ -27,7 +27,9 @@ "react": "^17.0.2", "react-dom": "^17.0.2", "react-twitter-embed": "^4.0.4", - "string-dedent": "^3.0.1" + "string-dedent": "^3.0.1", + "dotenv": "^16.3.1", + "toml": "^3.0.0" }, "devDependencies": { "@docusaurus/module-type-aliases": "2.4.1" diff --git a/docs/website/src/css/custom.css b/docs/website/src/css/custom.css index 7d45bef631..37aaf08749 100644 --- a/docs/website/src/css/custom.css +++ b/docs/website/src/css/custom.css @@ -358,6 +358,17 @@ html[data-theme='dark'] .footer__item a:hover{ display: none; } +.version-navbar>svg { + display: none; +} + +.version-navbar { + pointer-events: none; + background: var(--ifm-color-primary-light); + border-radius: 16px; + color: var(--docsearch-text-color); +} + .github-navbar:hover, .slack-navbar:hover ,.navbar__items.navbar__items--right .clean-btn:hover { @@ -741,7 +752,7 @@ html[data-theme='dark'] .overlayButton:hover { left:0px; top: 50%; transform: translateY(-50%); - background-color: var(--ifm-background-color); ; + background-color: var(--ifm-background-color); z-index: 1002; left: calc(50% - 350px); padding: 30px; diff --git a/docs/website/tools/update_version_env.js b/docs/website/tools/update_version_env.js new file mode 100644 index 0000000000..15d10bd970 --- /dev/null +++ b/docs/website/tools/update_version_env.js @@ -0,0 +1,17 @@ +// creates an .env file with the current version of the dlt for consumption in docusaurus.config.js + +const { readFile, writeFile } = require('fs/promises') +const tom = require('toml'); + +const TOML_FILE = '../../pyproject.toml'; +const ENV_FILE = '.env' + +async function update_env() { + const fileContent = await readFile(TOML_FILE, 'utf8'); + const toml = tom.parse(fileContent); + const version = toml['tool']['poetry']['version']; + const envFileContent = `DOCUSAURUS_DLT_VERSION=${version}`; + await writeFile(ENV_FILE, envFileContent, 'utf8'); +} + +update_env(); \ No newline at end of file From f9b4657f09bbe8481aedd8cb0488ae0339b95bd2 Mon Sep 17 00:00:00 2001 From: Dave Date: Wed, 22 Nov 2023 17:48:05 +0100 Subject: [PATCH 14/21] add second docs link to header --- docs/website/docusaurus.config.js | 3 ++- docs/website/src/css/custom.css | 6 +++++- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/docs/website/docusaurus.config.js b/docs/website/docusaurus.config.js index 8cf688b70a..d1f047307d 100644 --- a/docs/website/docusaurus.config.js +++ b/docs/website/docusaurus.config.js @@ -78,13 +78,14 @@ const config = { href: 'https://dlthub.com' }, items: [ - { label: 'dlt ' + (process.env.DOCUSAURUS_DLT_VERSION || "master"), position: 'left', href: 'https://github.com/dlt-hub/dlt', className: 'version-navbar' }, + { label: 'dlt ' + (process.env.DOCUSAURUS_DLT_VERSION || "0.0.1"), position: 'left', href: 'https://github.com/dlt-hub/dlt', className: 'version-navbar' }, { type: 'doc', docId: 'intro', position: 'left', label: 'Docs', }, + { href: 'https://dlthub.com/docs/intro', 'label': 'Devel Docs', position: 'left', className: 'switch-navbar' }, { to: 'blog', label: 'Blog', position: 'left' }, { href: 'https://join.slack.com/t/dlthub-community/shared_invite/zt-1n5193dbq-rCBmJ6p~ckpSFK4hCF2dYA', diff --git a/docs/website/src/css/custom.css b/docs/website/src/css/custom.css index 37aaf08749..cc166f292d 100644 --- a/docs/website/src/css/custom.css +++ b/docs/website/src/css/custom.css @@ -362,14 +362,18 @@ html[data-theme='dark'] .footer__item a:hover{ display: none; } +.switch-navbar>svg { + display: none; +} + .version-navbar { pointer-events: none; background: var(--ifm-color-primary-light); border-radius: 16px; color: var(--docsearch-text-color); + margin-right: 16px; } - .github-navbar:hover, .slack-navbar:hover ,.navbar__items.navbar__items--right .clean-btn:hover { opacity: 0.8; From d4adf688e8fffdc1dd045896a1ebd1f9a58f3b4a Mon Sep 17 00:00:00 2001 From: Dave Date: Thu, 23 Nov 2023 11:18:31 +0100 Subject: [PATCH 15/21] post formatting docs updates --- docs/examples/chess_production/chess.py | 12 ++- docs/examples/incremental_loading/zendesk.py | 8 +- docs/examples/nested_data/nested_data.py | 2 - docs/examples/transformers/pokemon.py | 4 +- .../dlt-ecosystem/transformations/dbt/dbt.md | 2 +- .../docs/examples/chess_production/index.md | 16 +--- .../docs/examples/connector_x_arrow/index.md | 14 ++- .../examples/incremental_loading/index.md | 7 +- .../docs/examples/nested_data/index.md | 12 +-- .../docs/examples/transformers/index.md | 6 +- docs/website/docs/getting-started.md | 95 ++++++++----------- docs/website/docs/intro.md | 11 +-- docs/website/docs/reference/performance.md | 7 +- 13 files changed, 78 insertions(+), 118 deletions(-) diff --git a/docs/examples/chess_production/chess.py b/docs/examples/chess_production/chess.py index 5b767f0eb6..b902134785 100644 --- a/docs/examples/chess_production/chess.py +++ b/docs/examples/chess_production/chess.py @@ -6,7 +6,6 @@ from dlt.common.typing import StrAny, TDataItems from dlt.sources.helpers.requests import client - @dlt.source def chess( chess_url: str = dlt.config.value, @@ -60,7 +59,6 @@ def players_games(username: Any) -> Iterator[TDataItems]: MAX_PLAYERS = 5 - def load_data_with_retry(pipeline, data): try: for attempt in Retrying( @@ -70,7 +68,9 @@ def load_data_with_retry(pipeline, data): reraise=True, ): with attempt: - logger.info(f"Running the pipeline, attempt={attempt.retry_state.attempt_number}") + logger.info( + f"Running the pipeline, attempt={attempt.retry_state.attempt_number}" + ) load_info = pipeline.run(data) logger.info(str(load_info)) @@ -92,7 +92,9 @@ def load_data_with_retry(pipeline, data): # print the information on the first load package and all jobs inside logger.info(f"First load package info: {load_info.load_packages[0]}") # print the information on the first completed job in first load package - logger.info(f"First completed job info: {load_info.load_packages[0].jobs['completed_jobs'][0]}") + logger.info( + f"First completed job info: {load_info.load_packages[0].jobs['completed_jobs'][0]}" + ) # check for schema updates: schema_updates = [p.schema_update for p in load_info.load_packages] @@ -150,4 +152,4 @@ def load_data_with_retry(pipeline, data): ) # get data for a few famous players data = chess(chess_url="https://api.chess.com/pub/", max_players=MAX_PLAYERS) - load_data_with_retry(pipeline, data) + load_data_with_retry(pipeline, data) \ No newline at end of file diff --git a/docs/examples/incremental_loading/zendesk.py b/docs/examples/incremental_loading/zendesk.py index 6113f98793..4b8597886a 100644 --- a/docs/examples/incremental_loading/zendesk.py +++ b/docs/examples/incremental_loading/zendesk.py @@ -6,11 +6,12 @@ from dlt.common.typing import TAnyDateTime from dlt.sources.helpers.requests import client - @dlt.source(max_table_nesting=2) def zendesk_support( credentials: Dict[str, str] = dlt.secrets.value, - start_date: Optional[TAnyDateTime] = pendulum.datetime(year=2000, month=1, day=1), # noqa: B008 + start_date: Optional[TAnyDateTime] = pendulum.datetime( # noqa: B008 + year=2000, month=1, day=1 + ), end_date: Optional[TAnyDateTime] = None, ): """ @@ -112,7 +113,6 @@ def get_pages( if not response_json["end_of_stream"]: get_url = response_json["next_page"] - if __name__ == "__main__": # create dlt pipeline pipeline = dlt.pipeline( @@ -120,4 +120,4 @@ def get_pages( ) load_info = pipeline.run(zendesk_support()) - print(load_info) + print(load_info) \ No newline at end of file diff --git a/docs/examples/nested_data/nested_data.py b/docs/examples/nested_data/nested_data.py index 7f85f0522e..3464448de6 100644 --- a/docs/examples/nested_data/nested_data.py +++ b/docs/examples/nested_data/nested_data.py @@ -13,7 +13,6 @@ CHUNK_SIZE = 10000 - # You can limit how deep dlt goes when generating child tables. # By default, the library will descend and generate child tables # for all nested lists, without a limit. @@ -82,7 +81,6 @@ def load_documents(self) -> Iterator[TDataItem]: while docs_slice := list(islice(cursor, CHUNK_SIZE)): yield map_nested_in_place(convert_mongo_objs, docs_slice) - def convert_mongo_objs(value: Any) -> Any: if isinstance(value, (ObjectId, Decimal128)): return str(value) diff --git a/docs/examples/transformers/pokemon.py b/docs/examples/transformers/pokemon.py index 97b9a98b11..c17beff6a8 100644 --- a/docs/examples/transformers/pokemon.py +++ b/docs/examples/transformers/pokemon.py @@ -1,7 +1,6 @@ import dlt from dlt.sources.helpers import requests - @dlt.source(max_table_nesting=2) def source(pokemon_api_url: str): """""" @@ -47,7 +46,6 @@ def species(pokemon_details): return (pokemon_list | pokemon, pokemon_list | pokemon | species) - if __name__ == "__main__": # build duck db pipeline pipeline = dlt.pipeline( @@ -56,4 +54,4 @@ def species(pokemon_details): # the pokemon_list resource does not need to be loaded load_info = pipeline.run(source("https://pokeapi.co/api/v2/pokemon")) - print(load_info) + print(load_info) \ No newline at end of file diff --git a/docs/website/docs/dlt-ecosystem/transformations/dbt/dbt.md b/docs/website/docs/dlt-ecosystem/transformations/dbt/dbt.md index af2d5df469..01c16e15b4 100644 --- a/docs/website/docs/dlt-ecosystem/transformations/dbt/dbt.md +++ b/docs/website/docs/dlt-ecosystem/transformations/dbt/dbt.md @@ -95,7 +95,7 @@ runner = create_runner( working_dir=".", # the package below will be cloned to current dir package_location="https://github.com/dbt-labs/jaffle_shop.git", package_profiles_dir=os.path.abspath("."), # profiles.yml must be placed in this dir - package_profile_name="duckdb_dlt_dbt_test" # name of the profile + package_profile_name="duckdb_dlt_dbt_test", # name of the profile ) models = runner.run_all() diff --git a/docs/website/docs/examples/chess_production/index.md b/docs/website/docs/examples/chess_production/index.md index c8278f8676..c2dbf05070 100644 --- a/docs/website/docs/examples/chess_production/index.md +++ b/docs/website/docs/examples/chess_production/index.md @@ -60,9 +60,7 @@ def chess( @dlt.transformer(data_from=players, write_disposition="replace") @dlt.defer def players_profiles(username: Any) -> TDataItems: - print( - f"getting {username} profile via thread {threading.current_thread().name}" - ) + print(f"getting {username} profile via thread {threading.current_thread().name}") sleep(1) # add some latency to show parallel runs return _get_data_with_retry(f"player/{username}") @@ -115,16 +113,12 @@ def load_data_with_retry(pipeline, data): load_info.raise_on_failed_jobs() # send notification send_slack_message( - pipeline.runtime_config.slack_incoming_hook, - "Data was successfully loaded!" + pipeline.runtime_config.slack_incoming_hook, "Data was successfully loaded!" ) except Exception: # we get here after all the failed retries # send notification - send_slack_message( - pipeline.runtime_config.slack_incoming_hook, - "Something went wrong!" - ) + send_slack_message(pipeline.runtime_config.slack_incoming_hook, "Something went wrong!") raise # we get here after a successful attempt @@ -142,9 +136,7 @@ def load_data_with_retry(pipeline, data): # send notifications if there are schema updates if schema_updates: # send notification - send_slack_message( - pipeline.runtime_config.slack_incoming_hook, "Schema was updated!" - ) + send_slack_message(pipeline.runtime_config.slack_incoming_hook, "Schema was updated!") # To run simple tests with `sql_client`, such as checking table counts and # warning if there is no data, you can use the `execute_query` method diff --git a/docs/website/docs/examples/connector_x_arrow/index.md b/docs/website/docs/examples/connector_x_arrow/index.md index 3d978deaaa..e62441412a 100644 --- a/docs/website/docs/examples/connector_x_arrow/index.md +++ b/docs/website/docs/examples/connector_x_arrow/index.md @@ -42,20 +42,18 @@ import dlt from dlt.sources.credentials import ConnectionStringCredentials def read_sql_x( - conn_str: ConnectionStringCredentials = dlt.secrets.value, - query: str = dlt.config.value + conn_str: ConnectionStringCredentials = dlt.secrets.value, query: str = dlt.config.value ): - yield cx.read_sql(conn_str.to_native_representation(), query, return_type="arrow2", protocol="binary") + yield cx.read_sql( + conn_str.to_native_representation(), query, return_type="arrow2", protocol="binary" + ) # create genome resource with merge on `upid` primary key genome = dlt.resource( - name="genome", - write_disposition="merge", - primary_key="upid", - standalone=True + name="genome", write_disposition="merge", primary_key="upid", standalone=True )(read_sql_x)( "mysql://rfamro@mysql-rfam-public.ebi.ac.uk:4497/Rfam", # type: ignore[arg-type] - "SELECT * FROM genome ORDER BY created LIMIT 1000" + "SELECT * FROM genome ORDER BY created LIMIT 1000", ) # add incremental on created at genome.apply_hints(incremental=dlt.sources.incremental("created")) diff --git a/docs/website/docs/examples/incremental_loading/index.md b/docs/website/docs/examples/incremental_loading/index.md index 47924c16f6..c8e3cb5068 100644 --- a/docs/website/docs/examples/incremental_loading/index.md +++ b/docs/website/docs/examples/incremental_loading/index.md @@ -40,11 +40,12 @@ from dlt.common.time import ensure_pendulum_datetime from dlt.common.typing import TAnyDateTime from dlt.sources.helpers.requests import client - @dlt.source(max_table_nesting=2) def zendesk_support( - credentials: Dict[str, str]=dlt.secrets.value, - start_date: Optional[TAnyDateTime] = pendulum.datetime(year=2000, month=1, day=1), # noqa: B008 + credentials: Dict[str, str] = dlt.secrets.value, + start_date: Optional[TAnyDateTime] = pendulum.datetime( # noqa: B008 + year=2000, month=1, day=1 + ), end_date: Optional[TAnyDateTime] = None, ): """ diff --git a/docs/website/docs/examples/nested_data/index.md b/docs/website/docs/examples/nested_data/index.md index e479aede3f..61ec33c105 100644 --- a/docs/website/docs/examples/nested_data/index.md +++ b/docs/website/docs/examples/nested_data/index.md @@ -98,9 +98,7 @@ if __name__ == "__main__": destination="duckdb", dataset_name="unpacked_data", ) - source_data = mongodb_collection( - collection="movies", write_disposition="replace" - ) + source_data = mongodb_collection(collection="movies", write_disposition="replace") load_info = pipeline.run(source_data) print(load_info) @@ -114,9 +112,7 @@ if __name__ == "__main__": destination="duckdb", dataset_name="not_unpacked_data", ) - source_data = mongodb_collection( - collection="movies", write_disposition="replace" - ) + source_data = mongodb_collection(collection="movies", write_disposition="replace") source_data.max_table_nesting = 0 load_info = pipeline.run(source_data) print(load_info) @@ -130,9 +126,7 @@ if __name__ == "__main__": destination="duckdb", dataset_name="unpacked_data_without_cast", ) - source_data = mongodb_collection( - collection="movies", write_disposition="replace" - ) + source_data = mongodb_collection(collection="movies", write_disposition="replace") source_data.movies.apply_hints(columns={"cast": {"data_type": "complex"}}) load_info = pipeline.run(source_data) print(load_info) diff --git a/docs/website/docs/examples/transformers/index.md b/docs/website/docs/examples/transformers/index.md index 3781357a1e..9fd480f8d0 100644 --- a/docs/website/docs/examples/transformers/index.md +++ b/docs/website/docs/examples/transformers/index.md @@ -32,7 +32,6 @@ We'll learn how to: import dlt from dlt.sources.helpers import requests - @dlt.source(max_table_nesting=2) def source(pokemon_api_url: str): """""" @@ -76,10 +75,7 @@ def source(pokemon_api_url: str): # 2. send pokemon details into `species` transformer to get species details # NOTE: dlt is smart enough to get data from pokemon_list and pokemon details once - return ( - pokemon_list | pokemon, - pokemon_list | pokemon | species - ) + return (pokemon_list | pokemon, pokemon_list | pokemon | species) if __name__ == "__main__": # build duck db pipeline diff --git a/docs/website/docs/getting-started.md b/docs/website/docs/getting-started.md index dbe728d783..d0f9f29e48 100644 --- a/docs/website/docs/getting-started.md +++ b/docs/website/docs/getting-started.md @@ -44,15 +44,10 @@ Let's load a list of Python objects (dictionaries) into `duckdb` and inspect the ```py import dlt -data = [ - {'id': 1, 'name': 'Alice'}, - {'id': 2, 'name': 'Bob'} -] +data = [{"id": 1, "name": "Alice"}, {"id": 2, "name": "Bob"}] pipeline = dlt.pipeline( - pipeline_name='quick_start', - destination='duckdb', - dataset_name='mydata' + pipeline_name="quick_start", destination="duckdb", dataset_name="mydata" ) load_info = pipeline.run(data, table_name="users") @@ -133,13 +128,13 @@ import dlt from dlt.common import json -with open("./assets/json_file.json", 'rb') as file: +with open("./assets/json_file.json", "rb") as file: data = json.load(file) pipeline = dlt.pipeline( - pipeline_name='from_json', - destination='duckdb', - dataset_name='mydata', + pipeline_name="from_json", + destination="duckdb", + dataset_name="mydata", ) # NOTE: test data that we load is just a dictionary so we enclose it in a list @@ -164,12 +159,12 @@ import pandas as pd owid_disasters_csv = "https://raw.githubusercontent.com/owid/owid-datasets/master/datasets/Natural%20disasters%20from%201900%20to%202019%20-%20EMDAT%20(2020)/Natural%20disasters%20from%201900%20to%202019%20-%20EMDAT%20(2020).csv" df = pd.read_csv(owid_disasters_csv) -data = df.to_dict(orient='records') +data = df.to_dict(orient="records") pipeline = dlt.pipeline( - pipeline_name='from_csv', - destination='duckdb', - dataset_name='mydata', + pipeline_name="from_csv", + destination="duckdb", + dataset_name="mydata", ) load_info = pipeline.run(data, table_name="natural_disasters") @@ -192,9 +187,9 @@ response = requests.get(url) response.raise_for_status() pipeline = dlt.pipeline( - pipeline_name='from_api', - destination='duckdb', - dataset_name='github_data', + pipeline_name="from_api", + destination="duckdb", + dataset_name="github_data", ) # the response contains a list of issues load_info = pipeline.run(response.json(), table_name="issues") @@ -222,19 +217,18 @@ from sqlalchemy import create_engine engine = create_engine("mysql+pymysql://rfamro@mysql-rfam-public.ebi.ac.uk:4497/Rfam") with engine.connect() as conn: # select genome table, stream data in batches of 100 elements - rows = conn.execution_options(yield_per=100).exec_driver_sql("SELECT * FROM genome LIMIT 1000") + rows = conn.execution_options(yield_per=100).exec_driver_sql( + "SELECT * FROM genome LIMIT 1000" + ) pipeline = dlt.pipeline( - pipeline_name='from_database', - destination='duckdb', - dataset_name='genome_data', + pipeline_name="from_database", + destination="duckdb", + dataset_name="genome_data", ) # here we convert the rows into dictionaries on the fly with a map function - load_info = pipeline.run( - map(lambda row: dict(row._mapping), rows), - table_name="genome" - ) + load_info = pipeline.run(map(lambda row: dict(row._mapping), rows), table_name="genome") print(load_info) ``` @@ -267,15 +261,12 @@ One method is to tell `dlt` to replace the data in existing tables by using `wri ```py import dlt -data = [ - {'id': 1, 'name': 'Alice'}, - {'id': 2, 'name': 'Bob'} -] +data = [{"id": 1, "name": "Alice"}, {"id": 2, "name": "Bob"}] pipeline = dlt.pipeline( - pipeline_name='replace_data', - destination='duckdb', - dataset_name='mydata', + pipeline_name="replace_data", + destination="duckdb", + dataset_name="mydata", ) load_info = pipeline.run(data, table_name="users", write_disposition="replace") @@ -334,11 +325,10 @@ def get_issues( break url = response.links["next"]["url"] - pipeline = dlt.pipeline( - pipeline_name='github_issues_incremental', - destination='duckdb', - dataset_name='github_data_append', + pipeline_name="github_issues_incremental", + destination="duckdb", + dataset_name="github_data_append", ) load_info = pipeline.run(get_issues) row_counts = pipeline.last_trace.last_normalize_info @@ -394,7 +384,7 @@ from dlt.sources.helpers import requests primary_key="id", ) def get_issues( - updated_at = dlt.sources.incremental("updated_at", initial_value="1970-01-01T00:00:00Z") + updated_at=dlt.sources.incremental("updated_at", initial_value="1970-01-01T00:00:00Z") ): # NOTE: we read only open issues to minimize number of calls to the API. There's a limit of ~50 calls for not authenticated Github users url = f"https://api.github.com/repos/dlt-hub/dlt/issues?since={updated_at.last_value}&per_page=100&sort=updated&directions=desc&state=open" @@ -410,9 +400,9 @@ def get_issues( url = response.links["next"]["url"] pipeline = dlt.pipeline( - pipeline_name='github_issues_merge', - destination='duckdb', - dataset_name='github_data_merge', + pipeline_name="github_issues_merge", + destination="duckdb", + dataset_name="github_data_merge", ) load_info = pipeline.run(get_issues) row_counts = pipeline.last_trace.last_normalize_info @@ -445,9 +435,7 @@ import dlt from dlt.sources.helpers import requests @dlt.resource(primary_key="id", table_name=lambda i: i["type"], write_disposition="append") -def repo_events( - last_created_at = dlt.sources.incremental("created_at") -): +def repo_events(last_created_at=dlt.sources.incremental("created_at")): url = "https://api.github.com/repos/dlt-hub/dlt/events?per_page=100" while True: @@ -466,9 +454,9 @@ def repo_events( url = response.links["next"]["url"] pipeline = dlt.pipeline( - pipeline_name='github_events', - destination='duckdb', - dataset_name='github_events_data', + pipeline_name="github_events", + destination="duckdb", + dataset_name="github_events_data", ) load_info = pipeline.run(repo_events) row_counts = pipeline.last_trace.last_normalize_info @@ -525,7 +513,6 @@ import dlt from dlt.destinations.impl.weaviate import weaviate_adapter from PyPDF2 import PdfReader - @dlt.resource(selected=False) def list_files(folder_path: str): folder_path = os.path.abspath(folder_path) @@ -534,10 +521,9 @@ def list_files(folder_path: str): yield { "file_name": filename, "file_path": file_path, - "mtime": os.path.getmtime(file_path) + "mtime": os.path.getmtime(file_path), } - @dlt.transformer(primary_key="page_id", write_disposition="merge") def pdf_to_text(file_item, separate_pages: bool = False): if not separate_pages: @@ -551,10 +537,7 @@ def pdf_to_text(file_item, separate_pages: bool = False): page_item["page_id"] = file_item["file_name"] + "_" + str(page_no) yield page_item -pipeline = dlt.pipeline( - pipeline_name='pdf_to_text', - destination='weaviate' -) +pipeline = dlt.pipeline(pipeline_name="pdf_to_text", destination="weaviate") # this constructs a simple pipeline that: (1) reads files from "invoices" folder (2) filters only those ending with ".pdf" # (3) sends them to pdf_to_text transformer with pipe (|) operator @@ -567,9 +550,7 @@ pdf_pipeline = list_files("assets/invoices").add_filter( pdf_pipeline.table_name = "InvoiceText" # use weaviate_adapter to tell destination to vectorize "text" column -load_info = pipeline.run( - weaviate_adapter(pdf_pipeline, vectorize="text") -) +load_info = pipeline.run(weaviate_adapter(pdf_pipeline, vectorize="text")) row_counts = pipeline.last_trace.last_normalize_info print(row_counts) print("------") diff --git a/docs/website/docs/intro.md b/docs/website/docs/intro.md index ed51c93ef6..cd5b0d43cb 100644 --- a/docs/website/docs/intro.md +++ b/docs/website/docs/intro.md @@ -25,21 +25,20 @@ There's no need to start any backends or containers. Import `dlt` in your Python ```py import dlt from dlt.sources.helpers import requests + # Create a dlt pipeline that will load # chess player data to the DuckDB destination pipeline = dlt.pipeline( - pipeline_name='chess_pipeline', - destination='duckdb', - dataset_name='player_data' + pipeline_name="chess_pipeline", destination="duckdb", dataset_name="player_data" ) # Grab some player data from Chess.com API data = [] -for player in ['magnuscarlsen', 'rpragchess']: - response = requests.get(f'https://api.chess.com/pub/player/{player}') +for player in ["magnuscarlsen", "rpragchess"]: + response = requests.get(f"https://api.chess.com/pub/player/{player}") response.raise_for_status() data.append(response.json()) # Extract, normalize, and load the data -load_info = pipeline.run(data, table_name='player') +load_info = pipeline.run(data, table_name="player") ``` diff --git a/docs/website/docs/reference/performance.md b/docs/website/docs/reference/performance.md index 8e9823cbd2..98773c2ef4 100644 --- a/docs/website/docs/reference/performance.md +++ b/docs/website/docs/reference/performance.md @@ -160,7 +160,6 @@ def get_details(item_id): # just return the results, if you yield, generator will be evaluated in main thread return {"row": item_id} - # evaluate the pipeline and print all the items # resources are iterators and they are evaluated in the same way in the pipeline.run print(list(list_items(0, 10) | get_details)) @@ -198,7 +197,6 @@ async def a_get_details(item_id): # just return the results, if you yield, generator will be evaluated in main thread return {"row": item_id} - print(list(list_items(0, 10) | a_get_details)) ``` @@ -306,7 +304,10 @@ def read_table(limit): rows = iter(range(limit)) while item_slice := list(islice(rows, 1000)): now = pendulum.now().isoformat() - yield [{"row": _id, "description": "this is row with id {_id}", "timestamp": now} for _id in item_slice] + yield [ + {"row": _id, "description": "this is row with id {_id}", "timestamp": now} + for _id in item_slice + ] # this prevents process pool to run the initialization code again if __name__ == "__main__" or "PYTEST_CURRENT_TEST" in os.environ: From 765e72f8db96125b5e3e67e2228f7374fe168c0a Mon Sep 17 00:00:00 2001 From: Dave Date: Thu, 23 Nov 2023 11:47:11 +0100 Subject: [PATCH 16/21] add top bar on devel and stable / devel switch link --- docs/website/docusaurus.config.js | 16 ++++++++++++++-- docs/website/sidebars.js | 17 +++++++++++++++++ docs/website/src/css/custom.css | 22 ++++++++++++++++++++-- 3 files changed, 51 insertions(+), 4 deletions(-) diff --git a/docs/website/docusaurus.config.js b/docs/website/docusaurus.config.js index d1f047307d..b5c377f2e0 100644 --- a/docs/website/docusaurus.config.js +++ b/docs/website/docusaurus.config.js @@ -30,6 +30,8 @@ const config = { locales: ['en'], }, + + presets: [ [ '@docusaurus/preset-classic', @@ -78,14 +80,13 @@ const config = { href: 'https://dlthub.com' }, items: [ - { label: 'dlt ' + (process.env.DOCUSAURUS_DLT_VERSION || "0.0.1"), position: 'left', href: 'https://github.com/dlt-hub/dlt', className: 'version-navbar' }, + { label: 'dlt ' + (process.env.IS_MASTER_BRANCH ? "stable ": "devel ") + (process.env.DOCUSAURUS_DLT_VERSION || "0.0.1"), position: 'left', href: 'https://github.com/dlt-hub/dlt', className: 'version-navbar' }, { type: 'doc', docId: 'intro', position: 'left', label: 'Docs', }, - { href: 'https://dlthub.com/docs/intro', 'label': 'Devel Docs', position: 'left', className: 'switch-navbar' }, { to: 'blog', label: 'Blog', position: 'left' }, { href: 'https://join.slack.com/t/dlthub-community/shared_invite/zt-1n5193dbq-rCBmJ6p~ckpSFK4hCF2dYA', @@ -187,4 +188,15 @@ const config = { ], }; +if (!process.env.IS_MASTER_BRANCH && config.themeConfig) { + config.themeConfig.announcementBar = { + id: 'devel docs', + content: + 'This is the development version of the dlt docs. Go to the stable docs.', + backgroundColor: '#4c4898', + textColor: '#fff', + isCloseable: false, + } +} + module.exports = config; diff --git a/docs/website/sidebars.js b/docs/website/sidebars.js index 9ae94a8514..5a49a17c46 100644 --- a/docs/website/sidebars.js +++ b/docs/website/sidebars.js @@ -268,4 +268,21 @@ const sidebars = { ] }; +// on the master branch link to devel and vice versa +if (process.env.IS_MASTER_BRANCH) { + sidebars.tutorialSidebar.push( { + type: 'link', + label: 'Switch to Devel Docs', + href: 'https://example.com', + className: 'learn-more-link', + }) +} else { + sidebars.tutorialSidebar.push( { + type: 'link', + label: 'Switch to Stable Docs', + href: 'https://example.com', + className: 'learn-more-link', + }) +} + module.exports = sidebars; diff --git a/docs/website/src/css/custom.css b/docs/website/src/css/custom.css index cc166f292d..28c493597d 100644 --- a/docs/website/src/css/custom.css +++ b/docs/website/src/css/custom.css @@ -38,7 +38,7 @@ --ifm-active-toc-link-color:#4C4898; --docsearch-highlight-color:#191937 !important; --docsearch-hit-color: #191937 !important; - + --ifm-footer-background-color: #E4E8F0; } /* For readability concerns, you should choose a lighter palette in dark mode. */ @@ -69,7 +69,7 @@ --docsearch-hit-background: #191937 !important; --docsearch-hit-color: #ffffff !important; --ifm-color-primary-light:#f3ff36; - + --ifm-footer-background-color: #191937; } body { @@ -680,6 +680,24 @@ html[data-theme='dark'] .theme-doc-sidebar-menu.menu__list>li:nth-child(8)>div>[ background-image: url(../../static/img/Reference-Active-1.svg); } +/* Devel / Stable switch */ + +.theme-doc-sidebar-menu.menu__list>li:nth-child(9)>a svg { + display: none; +} + +.theme-doc-sidebar-menu.menu__list>li:nth-child(9)>a { + flex: none; +} + +.theme-doc-sidebar-menu.menu__list>li:nth-child(9) { + margin-top:30px; + padding-top: 10px; + justify-content: center; + border-top: 1px solid; + border-color: var(--ifm-footer-background-color); +} + /* responsive css :start */ From 02d52a3fb01ce27402ab7c15deb3991bffb5e2d5 Mon Sep 17 00:00:00 2001 From: Dave Date: Thu, 23 Nov 2023 11:53:20 +0100 Subject: [PATCH 17/21] fix switch links --- docs/website/sidebars.js | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/website/sidebars.js b/docs/website/sidebars.js index 5a49a17c46..3fae972fe3 100644 --- a/docs/website/sidebars.js +++ b/docs/website/sidebars.js @@ -273,14 +273,14 @@ if (process.env.IS_MASTER_BRANCH) { sidebars.tutorialSidebar.push( { type: 'link', label: 'Switch to Devel Docs', - href: 'https://example.com', + href: 'https://dlthub.com/devel/intro', className: 'learn-more-link', }) } else { sidebars.tutorialSidebar.push( { type: 'link', label: 'Switch to Stable Docs', - href: 'https://example.com', + href: 'https://dlthub.com/docs/intro', className: 'learn-more-link', }) } From d453db3d83e1dfdbfce4c64ffec490810a0380fc Mon Sep 17 00:00:00 2001 From: Dave Date: Thu, 23 Nov 2023 13:39:23 +0100 Subject: [PATCH 18/21] small pr changes --- Makefile | 4 ++-- dlt/pipeline/pipeline.py | 4 ++-- dlt/pipeline/platform.py | 11 +++++------ 3 files changed, 9 insertions(+), 10 deletions(-) diff --git a/Makefile b/Makefile index 1059cfdf0a..d9d92ec799 100644 --- a/Makefile +++ b/Makefile @@ -48,7 +48,7 @@ dev: has-poetry lint: ./check-package.sh - poetry run black ./ --diff --exclude=".*syntax_error.py|\.venv.*" + poetry run black ./ --diff --exclude=".*syntax_error.py|\.venv.*|_storage/.*" # poetry run isort ./ --diff poetry run mypy --config-file mypy.ini dlt tests poetry run flake8 --max-line-length=200 dlt @@ -56,7 +56,7 @@ lint: # $(MAKE) lint-security format: - poetry run black ./ --exclude=".*syntax_error.py|\.venv.*" + poetry run black ./ --exclude=".*syntax_error.py|\.venv.*|_storage/.*" # poetry run isort ./ test-and-lint-snippets: diff --git a/dlt/pipeline/pipeline.py b/dlt/pipeline/pipeline.py index d4ccdafcec..836442f5bb 100644 --- a/dlt/pipeline/pipeline.py +++ b/dlt/pipeline/pipeline.py @@ -433,7 +433,7 @@ def normalize( self, "normalize", n_ex, normalize.get_normalize_info() ) from n_ex - @with_runtime_trace() + @with_runtime_trace(send_state=True) @with_schemas_sync @with_state_sync() @with_config_section((known_sections.LOAD,)) @@ -486,7 +486,7 @@ def load( except Exception as l_ex: raise PipelineStepFailed(self, "load", l_ex, self._get_load_info(load)) from l_ex - @with_runtime_trace(send_state=True) + @with_runtime_trace() @with_config_section(("run",)) def run( self, diff --git a/dlt/pipeline/platform.py b/dlt/pipeline/platform.py index 5ebaaf662e..c8014d5ae7 100644 --- a/dlt/pipeline/platform.py +++ b/dlt/pipeline/platform.py @@ -15,7 +15,7 @@ STATE_URL_SUFFIX = "/state" -class TSchemaSyncPayload(TypedDict): +class TPipelineSyncPayload(TypedDict): pipeline_name: str destination_name: str destination_displayable_credentials: str @@ -64,7 +64,7 @@ def _sync_schemas_to_platform(trace: PipelineTrace, pipeline: SupportsPipeline) if not load_info: return - payload = TSchemaSyncPayload( + payload = TPipelineSyncPayload( pipeline_name=pipeline.pipeline_name, destination_name=load_info.destination_name, destination_displayable_credentials=load_info.destination_displayable_credentials, @@ -109,11 +109,10 @@ def on_end_trace_step( step_info: Any, send_state: bool, ) -> None: - pass + if send_state: + # also sync schemas to dlthub + _sync_schemas_to_platform(trace, pipeline) def on_end_trace(trace: PipelineTrace, pipeline: SupportsPipeline, send_state: bool) -> None: _send_trace_to_platform(trace, pipeline) - if send_state: - # also sync schemas to dlthub - _sync_schemas_to_platform(trace, pipeline) From 0601d148780482d6536569393aa1805c73110449 Mon Sep 17 00:00:00 2001 From: rudolfix Date: Thu, 23 Nov 2023 15:10:06 +0100 Subject: [PATCH 19/21] improves data contract docs (#782) Co-authored-by: Dave --- dlt/common/schema/exceptions.py | 8 +- docs/examples/chess_production/chess.py | 12 +- docs/examples/incremental_loading/zendesk.py | 8 +- docs/examples/nested_data/nested_data.py | 2 + docs/examples/transformers/pokemon.py | 4 +- .../dlt-ecosystem/destinations/motherduck.md | 3 +- .../credentials/configuration.md | 2 +- .../docs/general-usage/data-contracts.md | 81 ------- docs/website/docs/general-usage/resource.md | 8 +- .../docs/general-usage/schema-contracts.md | 207 ++++++++++++++++++ docs/website/sidebars.js | 2 +- tests/common/schema/test_schema_contract.py | 6 +- tests/extract/test_validation.py | 4 +- tests/libs/test_pydantic.py | 8 +- 14 files changed, 244 insertions(+), 111 deletions(-) delete mode 100644 docs/website/docs/general-usage/data-contracts.md create mode 100644 docs/website/docs/general-usage/schema-contracts.md diff --git a/dlt/common/schema/exceptions.py b/dlt/common/schema/exceptions.py index f040325da9..7f73bcbf36 100644 --- a/dlt/common/schema/exceptions.py +++ b/dlt/common/schema/exceptions.py @@ -108,14 +108,14 @@ def __init__( schema_name: str, table_name: str, column_name: str, - contract_entity: TSchemaContractEntities, + schema_entity: TSchemaContractEntities, contract_mode: TSchemaEvolutionMode, table_schema: Any, schema_contract: TSchemaContractDict, data_item: Any = None, extended_info: str = None, ) -> None: - """Raised when `data_item` violates `contract_mode` on a `contract_entity` as defined by `table_schema` + """Raised when `data_item` violates `contract_mode` on a `schema_entity` as defined by `table_schema` Schema, table and column names are given as a context and full `schema_contract` and causing `data_item` as an evidence. """ @@ -128,7 +128,7 @@ def __init__( msg = ( "In " + msg - + f" . Contract on {contract_entity} with mode {contract_mode} is violated. " + + f" . Contract on {schema_entity} with mode {contract_mode} is violated. " + (extended_info or "") ) super().__init__(msg) @@ -137,7 +137,7 @@ def __init__( self.column_name = column_name # violated contract - self.contract_entity = contract_entity + self.schema_entity = schema_entity self.contract_mode = contract_mode # some evidence diff --git a/docs/examples/chess_production/chess.py b/docs/examples/chess_production/chess.py index b902134785..5b767f0eb6 100644 --- a/docs/examples/chess_production/chess.py +++ b/docs/examples/chess_production/chess.py @@ -6,6 +6,7 @@ from dlt.common.typing import StrAny, TDataItems from dlt.sources.helpers.requests import client + @dlt.source def chess( chess_url: str = dlt.config.value, @@ -59,6 +60,7 @@ def players_games(username: Any) -> Iterator[TDataItems]: MAX_PLAYERS = 5 + def load_data_with_retry(pipeline, data): try: for attempt in Retrying( @@ -68,9 +70,7 @@ def load_data_with_retry(pipeline, data): reraise=True, ): with attempt: - logger.info( - f"Running the pipeline, attempt={attempt.retry_state.attempt_number}" - ) + logger.info(f"Running the pipeline, attempt={attempt.retry_state.attempt_number}") load_info = pipeline.run(data) logger.info(str(load_info)) @@ -92,9 +92,7 @@ def load_data_with_retry(pipeline, data): # print the information on the first load package and all jobs inside logger.info(f"First load package info: {load_info.load_packages[0]}") # print the information on the first completed job in first load package - logger.info( - f"First completed job info: {load_info.load_packages[0].jobs['completed_jobs'][0]}" - ) + logger.info(f"First completed job info: {load_info.load_packages[0].jobs['completed_jobs'][0]}") # check for schema updates: schema_updates = [p.schema_update for p in load_info.load_packages] @@ -152,4 +150,4 @@ def load_data_with_retry(pipeline, data): ) # get data for a few famous players data = chess(chess_url="https://api.chess.com/pub/", max_players=MAX_PLAYERS) - load_data_with_retry(pipeline, data) \ No newline at end of file + load_data_with_retry(pipeline, data) diff --git a/docs/examples/incremental_loading/zendesk.py b/docs/examples/incremental_loading/zendesk.py index 4b8597886a..6113f98793 100644 --- a/docs/examples/incremental_loading/zendesk.py +++ b/docs/examples/incremental_loading/zendesk.py @@ -6,12 +6,11 @@ from dlt.common.typing import TAnyDateTime from dlt.sources.helpers.requests import client + @dlt.source(max_table_nesting=2) def zendesk_support( credentials: Dict[str, str] = dlt.secrets.value, - start_date: Optional[TAnyDateTime] = pendulum.datetime( # noqa: B008 - year=2000, month=1, day=1 - ), + start_date: Optional[TAnyDateTime] = pendulum.datetime(year=2000, month=1, day=1), # noqa: B008 end_date: Optional[TAnyDateTime] = None, ): """ @@ -113,6 +112,7 @@ def get_pages( if not response_json["end_of_stream"]: get_url = response_json["next_page"] + if __name__ == "__main__": # create dlt pipeline pipeline = dlt.pipeline( @@ -120,4 +120,4 @@ def get_pages( ) load_info = pipeline.run(zendesk_support()) - print(load_info) \ No newline at end of file + print(load_info) diff --git a/docs/examples/nested_data/nested_data.py b/docs/examples/nested_data/nested_data.py index 3464448de6..7f85f0522e 100644 --- a/docs/examples/nested_data/nested_data.py +++ b/docs/examples/nested_data/nested_data.py @@ -13,6 +13,7 @@ CHUNK_SIZE = 10000 + # You can limit how deep dlt goes when generating child tables. # By default, the library will descend and generate child tables # for all nested lists, without a limit. @@ -81,6 +82,7 @@ def load_documents(self) -> Iterator[TDataItem]: while docs_slice := list(islice(cursor, CHUNK_SIZE)): yield map_nested_in_place(convert_mongo_objs, docs_slice) + def convert_mongo_objs(value: Any) -> Any: if isinstance(value, (ObjectId, Decimal128)): return str(value) diff --git a/docs/examples/transformers/pokemon.py b/docs/examples/transformers/pokemon.py index c17beff6a8..97b9a98b11 100644 --- a/docs/examples/transformers/pokemon.py +++ b/docs/examples/transformers/pokemon.py @@ -1,6 +1,7 @@ import dlt from dlt.sources.helpers import requests + @dlt.source(max_table_nesting=2) def source(pokemon_api_url: str): """""" @@ -46,6 +47,7 @@ def species(pokemon_details): return (pokemon_list | pokemon, pokemon_list | pokemon | species) + if __name__ == "__main__": # build duck db pipeline pipeline = dlt.pipeline( @@ -54,4 +56,4 @@ def species(pokemon_details): # the pokemon_list resource does not need to be loaded load_info = pipeline.run(source("https://pokeapi.co/api/v2/pokemon")) - print(load_info) \ No newline at end of file + print(load_info) diff --git a/docs/website/docs/dlt-ecosystem/destinations/motherduck.md b/docs/website/docs/dlt-ecosystem/destinations/motherduck.md index e228aab045..939563d0f8 100644 --- a/docs/website/docs/dlt-ecosystem/destinations/motherduck.md +++ b/docs/website/docs/dlt-ecosystem/destinations/motherduck.md @@ -93,5 +93,4 @@ We also see them. My observation is that if you write a lot of data into the database then close the connection and then open it again to write, there's a chance of such timeout. Possible **WAL** file is being written to the remote duckdb database. ### Invalid Input Error: Initialization function "motherduck_init" from file -Use `duckdb 0.8.1` - +Use `duckdb 0.8.1` or above. diff --git a/docs/website/docs/general-usage/credentials/configuration.md b/docs/website/docs/general-usage/credentials/configuration.md index 4cb3e17468..867c47ccba 100644 --- a/docs/website/docs/general-usage/credentials/configuration.md +++ b/docs/website/docs/general-usage/credentials/configuration.md @@ -210,7 +210,7 @@ You can pass destination credentials and ignore the default lookup: pipeline = dlt.pipeline(destination="postgres", credentials=dlt.secrets["postgres_dsn"]) ``` -:::Note +:::note **dlt.config** and **dlt.secrets** can be also used as setters. For example: ```python dlt.config["sheet_id"] = "23029402349032049" diff --git a/docs/website/docs/general-usage/data-contracts.md b/docs/website/docs/general-usage/data-contracts.md deleted file mode 100644 index 543edf2502..0000000000 --- a/docs/website/docs/general-usage/data-contracts.md +++ /dev/null @@ -1,81 +0,0 @@ ---- -title: Data Contracts -description: Data contracts and controlling schema evolution -keywords: [data contracts, schema, dlt schema, pydantic] ---- - -## Data contracts and controlling schema evolution - -`dlt` will evolve the schema of the destination to accomodate the structure and data types of the extracted data. There are several settings -that you can use to control this automatic schema evolution, from the default settings where all changes to the schema are accepted to -a frozen schema that does not change at all. - -Consider this example: - -```py -@dlt.resource(schema_contract={"tables": "evolve", "columns": "freeze"}) -def items(): - ... -``` - -This resource will allow new subtables to be created, but will throw an exception if data is extracted for an existing table which -contains a new column. - -### Possible settings - -The `schema_contract` exists on the `source` decorator as a directive for all resources of that source and on the -`resource` decorator as a directive for the individual resource. Additionally it exists on the `pipeline.run()` method, which will override all existing settings. -The `schema_contract` is a dictionary with keys that control the following: - -* `table` creating of new tables and subtables -* `columns` creating of new columns on an existing table -* `data_type` creating of new variant columns, which happens if a different datatype is discovered in the extracted data than exists in the schema - -Each property can be set to one of three values: -* `freeze`: This will raise an exception if data is encountered that does not fit the existing schema, so no data will be loaded to the destination -* `discard_row`: This will discard any extracted row if it does not adhere to the existing schema, and this row will not be loaded to the destination. All other rows will be. -* `discard_value`: This will discard data in an extracted row that does not adhere to the existing schema and the row will be loaded without this data. - -If a table is a new table that has not been created on the destination yet, dlt will allow the creation of all columns and variants on the first run - -### Code Examples - -The below code will silently ignore new subtables, allow new columns to be added to existing tables and raise an error if a variant of a column is discovered. - -```py -@dlt.resource(schema_contract={"tables": "discard_row", "columns": "evolve", "data_type": "freeze"}) -def items(): - ... -``` - -The below Code will raise on any encountered schema change. Note: You can always set a string which will be interpreted as though all keys are set to these values. - -```py -pipeline.run(my_source(), schema_contract="freeze") -``` - -The below code defines some settings on the source which can be overwritten on the resource which in turn can be overwritten by the global override on the `run` method. -Here for all resources variant columns are frozen and raise an error if encountered, on `items` new columns are allowed but `other_items` inherits the `freeze` setting from -the source, thus new columns are frozen there. New tables are allowed. - -```py -@dlt.resource(schema_contract={"columns": "evolve"}) -def items(): - ... - -@dlt.resource() -def other_items(): - ... - -@dlt.source(schema_contract={"columns": "freeze", "data_type": "freeze"}): -def source(): - return [items(), other_items()] - - -# this will use the settings defined by the decorators -pipeline.run(source()) - -# this will freeze the whole schema, regardless of the decorator settings -pipeline.run(source(), schema_contract="freeze") - -``` \ No newline at end of file diff --git a/docs/website/docs/general-usage/resource.md b/docs/website/docs/general-usage/resource.md index a7f68fadd1..c4b9cac105 100644 --- a/docs/website/docs/general-usage/resource.md +++ b/docs/website/docs/general-usage/resource.md @@ -73,6 +73,9 @@ accepts following arguments: > 💡 You can mark some resource arguments as [configuration and credentials](credentials) > values so `dlt` can pass them automatically to your functions. +### Put a contract on a tables, columns and data +Use the `schema_contract` argument to tell dlt how to [deal with new tables, data types and bad data types](schema-contracts.md). For example if you set it to **freeze**, `dlt` will not allow for any new tables, columns or data types to be introduced to the schema - it will raise an exception. Learn more in on available contract modes [here](schema-contracts.md#setting-up-the-contract) + ### Define a schema with Pydantic You can alternatively use a [Pydantic](https://pydantic-docs.helpmanual.io/) model to define the schema. @@ -106,6 +109,8 @@ def get_users(): The data types of the table columns are inferred from the types of the pydantic fields. These use the same type conversions as when the schema is automatically generated from the data. +Pydantic models integrate well with [schema contracts](schema-contracts.md) as data validators. + Things to note: - Fields with an `Optional` type are marked as `nullable` @@ -131,6 +136,7 @@ behaviour of creating child tables for these fields. We do not support `RootModel` that validate simple types. You can add such validator yourself, see [data filtering section](#filter-transform-and-pivot-data). + ### Dispatch data to many tables You can load data to many tables from a single resource. The most common case is a stream of events @@ -307,7 +313,7 @@ assert list(r) == list(range(10)) > 💡 You cannot limit transformers. They should process all the data they receive fully to avoid > inconsistencies in generated datasets. -### Set table and adjust schema +### Set table name and adjust schema You can change the schema of a resource, be it standalone or as a part of a source. Look for method named `apply_hints` which takes the same arguments as resource decorator. Obviously you should call diff --git a/docs/website/docs/general-usage/schema-contracts.md b/docs/website/docs/general-usage/schema-contracts.md new file mode 100644 index 0000000000..26fa231cae --- /dev/null +++ b/docs/website/docs/general-usage/schema-contracts.md @@ -0,0 +1,207 @@ +--- +title: 🧪 Schema and Data Contracts +description: Controlling schema evolution and validating data +keywords: [data contracts, schema, dlt schema, pydantic] +--- + +## Schema and Data Contracts + +`dlt` will evolve the schema at the destination by following the structure and data types of the extracted data. There are several modes +that you can use to control this automatic schema evolution, from the default modes where all changes to the schema are accepted to +a frozen schema that does not change at all. + +Consider this example: + +```py +@dlt.resource(schema_contract={"tables": "evolve", "columns": "freeze"}) +def items(): + ... +``` + +This resource will allow new tables (both child tables and [tables with dynamic names](resource.md#dispatch-data-to-many-tables)) to be created, but will throw an exception if data is extracted for an existing table which contains a new column. + +### Setting up the contract +You can control the following **schema entities**: +* `tables` - contract is applied when a new table is created +* `columns` - contract is applied when a new column is created on an existing table +* `data_type` - contract is applied when data cannot be coerced into a data type associate with existing column. + +You can use **contract modes** to tell `dlt` how to apply contract for a particular entity: +* `evolve`: No constraints on schema changes. +* `freeze`: This will raise an exception if data is encountered that does not fit the existing schema, so no data will be loaded to the destination +* `discard_row`: This will discard any extracted row if it does not adhere to the existing schema, and this row will not be loaded to the destination. +* `discard_value`: This will discard data in an extracted row that does not adhere to the existing schema and the row will be loaded without this data. + +:::note +The default mode (**evolve**) works as follows: +1. New tables may be always created +2. New columns may be always appended to the existing table +3. Data that do not coerce to existing data type of a particular column will be sent to a [variant column](schema.md#variant-columns) created for this particular type. +::: + +#### Passing schema_contract argument +The `schema_contract` exists on the [dlt.source](source.md) decorator as a default for all resources in that source and on the +[dlt.resource](source.md) decorator as a directive for the individual resource - and as a consequence - on all tables created by this resource. +Additionally it exists on the `pipeline.run()` method, which will override all existing settings. + +The `schema_contract` argument accepts two forms: +1. **full**: a mapping of schema entities to contract modes +2. **shorthand** a contract mode (string) that will be applied to all schema entities. + +For example setting `schema_contract` to *freeze* will expand to the full form: +```python +{"tables": "freeze", "columns": "freeze", "data_type": "freeze"} +``` + +You can change the contract on the **source** instance via `schema_contract` property. For **resource** you can use [apply_hints](resource#set-table-name-and-adjust-schema). + + +#### Nuances of contract modes. +1. Contracts are applied **after names of tables and columns are normalized**. +2. Contract defined on a resource is applied to all tables and child tables created by that resource. +3. `discard_row` works on table level. So for example if you have two tables in parent-child relationship ie. *users* and *users__addresses* and contract is violated in *users__addresses* table, the row of that table is discarded while the parent row in *users* table will be loaded. + +### Use Pydantic models for data validation +Pydantic models can be used to [define table schemas and validate incoming data](resource.md#define-a-schema-with-pydantic). You can use any model you already have. `dlt` will internally synthesize (if necessary) new models that conform with the **schema contract** on the resource. + +Just passing a model in `column` argument of the [dlt.resource](resource.md#define-a-schema-with-pydantic) sets a schema contract that conforms to default Pydantic behavior: +```python +{ + "tables": "evolve", + "columns": "discard_value", + "data_type": "freeze" +} +``` +New tables are allowed, extra fields are ignored and invalid data raises an exception. + +If you pass schema contract explicitly the following happens to schema entities: +1. **tables** do not impact the Pydantic models +2. **columns** modes are mapped into the **extra** modes of Pydantic (see below). `dlt` will apply this setting recursively if models contain other models. +3. **data_type** supports following modes for Pydantic: **evolve** will synthesize lenient model that allows for any data type. This may result with variant columns upstream. +**freeze** will re-raise `ValidationException`. **discard_row** will remove the non-validating data items. +**discard_value** is not currently supported. We may eventually do that on Pydantic v2. + +`dlt` maps column contract modes into the extra fields settings as follows. + +Note that this works in two directions. If you use a model with such setting explicitly configured, `dlt` sets the column contract mode accordingly. This also avoids synthesizing modified models. + +| column mode | pydantic extra | +| ------------- | -------------- | +| evolve | allow | +| freeze | forbid | +| discard_value | ignore | +| discard_row | forbid | + +`discard_row` requires additional handling when ValidationError is raised. + +:::tip +Model validation is added as a [transform step](resource.md#filter-transform-and-pivot-data) to the resource. This step will convert the incoming data items into instances of validating models. You could easily convert them back to dictionaries by using `add_map(lambda item: item.dict())` on a resource. +::: + +:::note +Pydantic models work on the **extracted** data **before names are normalized or child relationships are created**. Make sure to name model fields as in your input data and handle nested data with the nested models. + +As a consequence, `discard_row` will drop the whole data item - even if nested model was affected. +::: + +### Set contracts on Arrow Tables and Pandas +All contract settings apply to [arrow tables and panda frames](../dlt-ecosystem/verified-sources/arrow-pandas.md) as well. +1. **tables** mode the same - no matter what is the data item type +2. **columns** will allow new columns, raise an exception or modify tables/frames still in extract step to avoid re-writing parquet files. +3. **data_type** changes to data types in tables/frames are not allowed and will result in data type schema clash. We could allow for more modes (evolving data types in Arrow tables sounds weird but ping us on Slack if you need it.) + +Here's how `dlt` deals with column modes: +1. **evolve** new columns are allowed (table may be reordered to put them at the end) +2. **discard_value** column will be deleted +3. **discard_row** rows with the column present will be deleted and then column will be deleted +4. **freeze** exception on a new column + + +### Get context from DataValidationError in freeze mode +When contract is violated in freeze mode, `dlt` raises `DataValidationError` exception. This exception gives access to the full context and passes the evidence to the caller. +As with any other exception coming from pipeline run, it will be re-raised via `PipelineStepFailed` exception which you should catch in except: + +```python +try: + pipeline.run() +except as pip_ex: + if pip_ex.step == "normalize": + if isinstance(pip_ex.__context__, DataValidationError): + ... + if pip_ex.step == "extract": + # wrapped in resource exception + +``` + +`DataValidationError` provides the following context: +1. `schema_name`, `table_name` and `column_name` provide the logical "location" at which the contract was violated. +2. `schema_entity` and `contract_mode` tell which contract was violated +3. `table_schema` contains the schema against which the contract was validated. May be Pydantic model or `dlt` TTableSchema instance +4. `schema_contract` the full, expanded schema contract +5. `data_item` causing data item (Python dict, arrow table, pydantic model or list of there of) + + +### Contracts on new tables +If a table is a **new table** that has not been created on the destination yet, dlt will allow the creation of new columns. For a single pipeline run, the column mode is changed (internally) to **evolve** and then reverted back to the original mode. This allows for initial schema inference to happen and then on subsequent run, the inferred contract will be applied to a new data. + +Following tables are considered new: +1. Child tables inferred from the nested data +2. Dynamic tables created from the data during extraction +3. Tables containing **incomplete** columns - columns without data type bound to them. + +For example such table is considered new because column **number** is incomplete (define primary key and NOT null but no data type) +```yaml + blocks: + description: Ethereum blocks + write_disposition: append + columns: + number: + nullable: false + primary_key: true + name: number +``` + +What tables are not considered new: +1. Those with columns defined by Pydantic modes + +### Code Examples + +The below code will silently ignore new subtables, allow new columns to be added to existing tables and raise an error if a variant of a column is discovered. + +```py +@dlt.resource(schema_contract={"tables": "discard_row", "columns": "evolve", "data_type": "freeze"}) +def items(): + ... +``` + +The below Code will raise on any encountered schema change. Note: You can always set a string which will be interpreted as though all keys are set to these values. + +```py +pipeline.run(my_source(), schema_contract="freeze") +``` + +The below code defines some settings on the source which can be overwritten on the resource which in turn can be overwritten by the global override on the `run` method. +Here for all resources variant columns are frozen and raise an error if encountered, on `items` new columns are allowed but `other_items` inherits the `freeze` setting from +the source, thus new columns are frozen there. New tables are allowed. + +```py +@dlt.resource(schema_contract={"columns": "evolve"}) +def items(): + ... + +@dlt.resource() +def other_items(): + ... + +@dlt.source(schema_contract={"columns": "freeze", "data_type": "freeze"}): +def source(): + return [items(), other_items()] + + +# this will use the settings defined by the decorators +pipeline.run(source()) + +# this will freeze the whole schema, regardless of the decorator settings +pipeline.run(source(), schema_contract="freeze") + +``` \ No newline at end of file diff --git a/docs/website/sidebars.js b/docs/website/sidebars.js index 3fae972fe3..0e3584bddd 100644 --- a/docs/website/sidebars.js +++ b/docs/website/sidebars.js @@ -106,7 +106,7 @@ const sidebars = { 'general-usage/incremental-loading', 'general-usage/full-loading', 'general-usage/schema', - 'general-usage/data-contracts', + 'general-usage/schema-contracts', { type: 'category', label: 'Configuration', diff --git a/tests/common/schema/test_schema_contract.py b/tests/common/schema/test_schema_contract.py index 7fdeed5408..32f9583b26 100644 --- a/tests/common/schema/test_schema_contract.py +++ b/tests/common/schema/test_schema_contract.py @@ -185,7 +185,7 @@ def test_check_adding_table(base_settings) -> None: assert val_ex.value.schema_name == schema.name assert val_ex.value.table_name == "new_table" assert val_ex.value.column_name is None - assert val_ex.value.contract_entity == "tables" + assert val_ex.value.schema_entity == "tables" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema is None # there's no validating schema on new table assert val_ex.value.data_item == {"item": 1} @@ -236,7 +236,7 @@ def assert_new_column(table_update: TTableSchema, column_name: str) -> None: assert val_ex.value.schema_name == schema.name assert val_ex.value.table_name == table_update["name"] assert val_ex.value.column_name == column_name - assert val_ex.value.contract_entity == "columns" + assert val_ex.value.schema_entity == "columns" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema == schema.get_table(table_update["name"]) assert val_ex.value.data_item == {column_name: 1} @@ -332,7 +332,7 @@ def test_check_adding_new_variant() -> None: assert val_ex.value.schema_name == schema.name assert val_ex.value.table_name == table_update["name"] assert val_ex.value.column_name == "column_2_variant" - assert val_ex.value.contract_entity == "data_type" + assert val_ex.value.schema_entity == "data_type" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema == schema.get_table(table_update["name"]) assert val_ex.value.data_item is None # we do not pass it to apply_schema_contract diff --git a/tests/extract/test_validation.py b/tests/extract/test_validation.py index 45d75e0b92..045f75ab73 100644 --- a/tests/extract/test_validation.py +++ b/tests/extract/test_validation.py @@ -172,7 +172,7 @@ def some_data() -> t.Iterator[TDataItems]: assert val_ex.table_name == "some_data" assert val_ex.column_name == "('items', 1, 'a')" if yield_list else "('a',)" assert val_ex.data_item == {"a": "not_int", "b": "x"} - assert val_ex.contract_entity == "data_type" + assert val_ex.schema_entity == "data_type" # fail in pipeline @dlt.resource(columns=SimpleModel) @@ -191,7 +191,7 @@ def some_data_extra() -> t.Iterator[TDataItems]: assert isinstance(py_ex.value.__cause__.__cause__, DataValidationError) val_ex = py_ex.value.__cause__.__cause__ assert val_ex.table_name == "some_data_extra" - assert val_ex.contract_entity == "data_type" # extra field is the cause + assert val_ex.schema_entity == "data_type" # extra field is the cause assert val_ex.data_item == {"a": "not_int", "b": "x"} diff --git a/tests/libs/test_pydantic.py b/tests/libs/test_pydantic.py index 1021a3037d..7f9ec52468 100644 --- a/tests/libs/test_pydantic.py +++ b/tests/libs/test_pydantic.py @@ -308,7 +308,7 @@ class ItemModel(BaseModel): assert val_ex.value.schema_name is None assert val_ex.value.table_name == "items" assert val_ex.value.column_name == str(("items", 1, "b")) # pydantic location - assert val_ex.value.contract_entity == "data_type" + assert val_ex.value.schema_entity == "data_type" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema is freeze_list_model assert val_ex.value.data_item == {"b": 2} @@ -324,7 +324,7 @@ class ItemModel(BaseModel): assert val_ex.value.schema_name is None assert val_ex.value.table_name == "items" assert val_ex.value.column_name == str(("items", 1, "a")) # pydantic location - assert val_ex.value.contract_entity == "columns" + assert val_ex.value.schema_entity == "columns" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema is freeze_list_model assert val_ex.value.data_item == {"a": 2, "b": False} @@ -423,7 +423,7 @@ class ItemModel(BaseModel): assert val_ex.value.schema_name is None assert val_ex.value.table_name == "items" assert val_ex.value.column_name == str(("b",)) # pydantic location - assert val_ex.value.contract_entity == "data_type" + assert val_ex.value.schema_entity == "data_type" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema is freeze_model assert val_ex.value.data_item == {"b": 2} @@ -433,7 +433,7 @@ class ItemModel(BaseModel): assert val_ex.value.schema_name is None assert val_ex.value.table_name == "items" assert val_ex.value.column_name == str(("a",)) # pydantic location - assert val_ex.value.contract_entity == "columns" + assert val_ex.value.schema_entity == "columns" assert val_ex.value.contract_mode == "freeze" assert val_ex.value.table_schema is freeze_model assert val_ex.value.data_item == {"a": 2, "b": False} From e48813f0481e466b9c4fef8a02af16d6093e1378 Mon Sep 17 00:00:00 2001 From: Alexander Butler <41213451+z3z1ma@users.noreply.github.com> Date: Thu, 23 Nov 2023 17:02:04 +0000 Subject: [PATCH 20/21] fix: ensure accessor typing does not make static type checker error (#785) --- dlt/common/configuration/accessors.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/dlt/common/configuration/accessors.py b/dlt/common/configuration/accessors.py index 1d6ef221b9..dfadc97fa3 100644 --- a/dlt/common/configuration/accessors.py +++ b/dlt/common/configuration/accessors.py @@ -106,7 +106,7 @@ def writable_provider(self) -> ConfigProvider: if p.is_writable and not p.supports_secrets ) - value: ClassVar[None] = ConfigValue + value: ClassVar[Any] = ConfigValue "A placeholder that tells dlt to replace it with actual config value during the call to a source or resource decorated function." @@ -129,7 +129,7 @@ def writable_provider(self) -> ConfigProvider: p for p in self._get_providers_from_context() if p.is_writable and p.supports_secrets ) - value: ClassVar[None] = ConfigValue + value: ClassVar[Any] = ConfigValue "A placeholder that tells dlt to replace it with actual secret during the call to a source or resource decorated function." From 1f94a3b21a8eb70418edbc158fad7337ea95db8f Mon Sep 17 00:00:00 2001 From: rudolfix Date: Wed, 29 Nov 2023 22:10:51 +0100 Subject: [PATCH 21/21] Rfix/load package extract (#790) * implements package storage * removes deprecated to_service_account_credentials * allows to reopen buffered writer * WIP extract state with other resources * adds version hash to state * adds load id to extract step * adds typing based deprecations * adds high precision timer for windows * adds listing of packages and tests --- Makefile | 6 +- dlt/cli/pipeline_command.py | 26 +- .../configuration/specs/gcp_credentials.py | 6 - dlt/common/data_writers/buffered.py | 6 +- dlt/common/pipeline.py | 5 +- dlt/common/schema/schema.py | 12 +- dlt/common/schema/utils.py | 17 +- dlt/common/storages/__init__.py | 14 +- dlt/common/storages/data_item_storage.py | 32 +- dlt/common/storages/exceptions.py | 20 +- dlt/common/storages/file_storage.py | 6 +- dlt/common/storages/load_package.py | 483 ++ dlt/common/storages/load_storage.py | 572 +- dlt/common/storages/normalize_storage.py | 81 +- dlt/common/time.py | 14 +- dlt/common/warnings.py | 151 + .../impl/filesystem/filesystem.py | 7 +- dlt/extract/extract.py | 16 +- dlt/extract/extractors.py | 8 +- dlt/extract/source.py | 11 +- dlt/extract/storage.py | 100 +- dlt/load/load.py | 38 +- dlt/normalize/items_normalizers.py | 37 +- dlt/normalize/normalize.py | 89 +- dlt/pipeline/__init__.py | 2 +- dlt/pipeline/helpers.py | 16 +- dlt/pipeline/pipeline.py | 183 +- dlt/pipeline/state_sync.py | 63 +- dlt/pipeline/{deprecations.py => warnings.py} | 3 +- .../performance-snippets.py | 8 +- mypy.ini | 2 + poetry.lock | 7521 +++++++++-------- pyproject.toml | 2 +- tests/common/storages/test_load_package.py | 121 + tests/common/storages/test_load_storage.py | 177 + tests/common/storages/test_loader_storage.py | 331 - .../common/storages/test_normalize_storage.py | 25 - tests/common/storages/utils.py | 68 +- tests/extract/test_extract.py | 122 +- tests/extract/test_incremental.py | 3 + tests/extract/utils.py | 16 +- tests/load/bigquery/test_bigquery_client.py | 3 +- .../load/filesystem/test_filesystem_client.py | 4 +- tests/load/pipeline/test_arrow_loading.py | 2 +- tests/load/pipeline/test_pipelines.py | 9 +- tests/load/pipeline/test_restore_state.py | 9 +- tests/load/test_dummy_client.py | 121 +- tests/load/utils.py | 27 +- tests/normalize/test_normalize.py | 137 +- .../cases/github_pipeline/github_extract.py | 2 - .../cases/github_pipeline/github_normalize.py | 6 + .../cases/github_pipeline/github_pipeline.py | 5 +- tests/pipeline/test_arrow_sources.py | 14 +- tests/pipeline/test_dlt_versions.py | 106 +- tests/pipeline/test_pipeline.py | 41 +- tests/pipeline/test_pipeline_state.py | 7 +- tests/pipeline/test_schema_contracts.py | 4 +- 57 files changed, 5973 insertions(+), 4944 deletions(-) create mode 100644 dlt/common/storages/load_package.py create mode 100644 dlt/common/warnings.py rename dlt/pipeline/{deprecations.py => warnings.py} (88%) create mode 100644 tests/common/storages/test_load_package.py create mode 100644 tests/common/storages/test_load_storage.py delete mode 100644 tests/common/storages/test_loader_storage.py create mode 100644 tests/pipeline/cases/github_pipeline/github_normalize.py diff --git a/Makefile b/Makefile index d9d92ec799..55fc82478e 100644 --- a/Makefile +++ b/Makefile @@ -48,15 +48,15 @@ dev: has-poetry lint: ./check-package.sh - poetry run black ./ --diff --exclude=".*syntax_error.py|\.venv.*|_storage/.*" - # poetry run isort ./ --diff poetry run mypy --config-file mypy.ini dlt tests poetry run flake8 --max-line-length=200 dlt poetry run flake8 --max-line-length=200 tests --exclude tests/reflection/module_cases + poetry run black dlt docs tests --diff --exclude=".*syntax_error.py|\.venv.*|_storage/.*" + # poetry run isort ./ --diff # $(MAKE) lint-security format: - poetry run black ./ --exclude=".*syntax_error.py|\.venv.*|_storage/.*" + poetry run black dlt docs tests --exclude=".*syntax_error.py|\.venv.*|_storage/.*" # poetry run isort ./ test-and-lint-snippets: diff --git a/dlt/cli/pipeline_command.py b/dlt/cli/pipeline_command.py index c7b8dd53d4..8b8056645f 100644 --- a/dlt/cli/pipeline_command.py +++ b/dlt/cli/pipeline_command.py @@ -9,7 +9,7 @@ from dlt.common.runners import Venv from dlt.common.runners.stdout import iter_stdout from dlt.common.schema.utils import group_tables_by_resource, remove_defaults -from dlt.common.storages import FileStorage, LoadStorage +from dlt.common.storages import FileStorage, PackageStorage from dlt.pipeline.helpers import DropCommand from dlt.pipeline.exceptions import CannotRestorePipelineException @@ -72,28 +72,30 @@ def pipeline_command( return # No need to sync again def _display_pending_packages() -> Tuple[Sequence[str], Sequence[str]]: - extracted_files = p.list_extracted_resources() - if extracted_files: + extracted_packages = p.list_extracted_load_packages() + if extracted_packages: fmt.echo( - "Has %s extracted files ready to be normalized" - % fmt.bold(str(len(extracted_files))) + "Has %s extracted packages ready to be normalized with following load ids:" + % fmt.bold(str(len(extracted_packages))) ) + for load_id in extracted_packages: + fmt.echo(load_id) norm_packages = p.list_normalized_load_packages() if norm_packages: fmt.echo( - "Has %s load packages ready to be loaded with following load ids:" + "Has %s normalized packages ready to be loaded with following load ids:" % fmt.bold(str(len(norm_packages))) ) for load_id in norm_packages: fmt.echo(load_id) # load first (oldest) package first_package_info = p.get_load_package_info(norm_packages[0]) - if LoadStorage.is_package_partially_loaded(first_package_info): + if PackageStorage.is_package_partially_loaded(first_package_info): fmt.warning( "This package is partially loaded. Data in the destination may be modified." ) fmt.echo() - return extracted_files, norm_packages + return extracted_packages, norm_packages fmt.echo("Found pipeline %s in %s" % (fmt.bold(p.pipeline_name), fmt.bold(p.pipelines_dir))) @@ -209,8 +211,8 @@ def _display_pending_packages() -> Tuple[Sequence[str], Sequence[str]]: fmt.echo("No failed jobs found") if operation == "drop-pending-packages": - extracted_files, norm_packages = _display_pending_packages() - if len(extracted_files) == 0 and len(norm_packages) == 0: + extracted_packages, norm_packages = _display_pending_packages() + if len(extracted_packages) == 0 and len(norm_packages) == 0: fmt.echo("No pending packages found") if fmt.confirm("Delete the above packages?", default=False): p.drop_pending_packages(with_partial_loads=True) @@ -230,7 +232,9 @@ def _display_pending_packages() -> Tuple[Sequence[str], Sequence[str]]: if operation == "load-package": load_id = command_kwargs.get("load_id") if not load_id: - packages = sorted(p.list_normalized_load_packages()) + packages = sorted(p.list_extracted_load_packages()) + if not packages: + packages = sorted(p.list_normalized_load_packages()) if not packages: packages = sorted(p.list_completed_load_packages()) if not packages: diff --git a/dlt/common/configuration/specs/gcp_credentials.py b/dlt/common/configuration/specs/gcp_credentials.py index fc42fe93d5..f00ec62651 100644 --- a/dlt/common/configuration/specs/gcp_credentials.py +++ b/dlt/common/configuration/specs/gcp_credentials.py @@ -1,6 +1,5 @@ import sys from typing import Any, Final, List, Tuple, Union -from deprecated import deprecated from dlt.common import json, pendulum from dlt.common.configuration.specs.api_credentials import OAuth2Credentials @@ -89,13 +88,8 @@ def on_resolved(self) -> None: # must end with new line, otherwise won't be parsed by Crypto self.private_key = TSecretValue(self.private_key + "\n") - @deprecated(reason="Use 'to_native_credentials' method instead") - def to_service_account_credentials(self) -> Any: - return self.to_native_credentials() - def to_native_credentials(self) -> Any: """Returns google.oauth2.service_account.Credentials""" - from google.oauth2.service_account import Credentials as ServiceAccountCredentials if isinstance(self.private_key, ServiceAccountCredentials): diff --git a/dlt/common/data_writers/buffered.py b/dlt/common/data_writers/buffered.py index 0c0f0a62f5..1c95daa979 100644 --- a/dlt/common/data_writers/buffered.py +++ b/dlt/common/data_writers/buffered.py @@ -1,5 +1,4 @@ import gzip -from functools import reduce from typing import List, IO, Any, Optional, Type, TypeVar, Generic from dlt.common.utils import uniq_id @@ -75,7 +74,9 @@ def __init__( raise InvalidFileNameTemplateException(file_name_template) def write_data_item(self, item: TDataItems, columns: TTableSchemaColumns) -> int: - self._ensure_open() + if self._closed: + self._rotate_file() + self._closed = False # rotate file if columns changed and writer does not allow for that # as the only allowed change is to add new column (no updates/deletes), we detect the change by comparing lengths if ( @@ -175,6 +176,7 @@ def _flush_and_close_file(self) -> None: self.closed_files.append(self._file_name) self._writer = None self._file = None + self._file_name = None def _ensure_open(self) -> None: if self._closed: diff --git a/dlt/common/pipeline.py b/dlt/common/pipeline.py index 6a20488293..87646c681e 100644 --- a/dlt/common/pipeline.py +++ b/dlt/common/pipeline.py @@ -176,7 +176,9 @@ class TPipelineLocalState(TypedDict, total=False): first_run: bool """Indicates a first run of the pipeline, where run ends with successful loading of data""" _last_extracted_at: datetime.datetime - """Timestamp indicating when the state was synced with the destination. Lack of timestamp means not synced state.""" + """Timestamp indicating when the state was synced with the destination.""" + _last_extracted_hash: str + """Hash of state that was recently synced with destination""" class TPipelineState(TypedDict, total=False): @@ -193,6 +195,7 @@ class TPipelineState(TypedDict, total=False): # properties starting with _ are not automatically applied to pipeline object when state is restored _state_version: int + _version_hash: str _state_engine_version: int _local: TPipelineLocalState """A section of state that is not synchronized with the destination and does not participate in change merging and version control""" diff --git a/dlt/common/schema/schema.py b/dlt/common/schema/schema.py index 36b7627a0b..e07b1f9d32 100644 --- a/dlt/common/schema/schema.py +++ b/dlt/common/schema/schema.py @@ -588,7 +588,7 @@ def version_hash(self) -> str: return utils.bump_version_if_modified(self.to_dict())[1] @property - def previous_hashes(self) -> List[str]: + def previous_hashes(self) -> Sequence[str]: """Current version hash of the schema, recomputed from the actual content""" return utils.bump_version_if_modified(self.to_dict())[3] @@ -618,9 +618,15 @@ def to_pretty_yaml(self, remove_defaults: bool = True) -> str: d = self.to_dict(remove_defaults=remove_defaults) return yaml.dump(d, allow_unicode=True, default_flow_style=False, sort_keys=False) - def clone(self, update_normalizers: bool = False) -> "Schema": - """Make a deep copy of the schema, possibly updating normalizers and identifiers in the schema if `update_normalizers` is True""" + def clone(self, with_name: str = None, update_normalizers: bool = False) -> "Schema": + """Make a deep copy of the schema, optionally changing the name, and updating normalizers and identifiers in the schema if `update_normalizers` is True + + Note that changing of name will break the previous version chain + """ d = deepcopy(self.to_dict()) + if with_name is not None: + d["name"] = with_name + d["previous_hashes"] = [] schema = Schema.from_dict(d) # type: ignore # update normalizers and possibly all schema identifiers if update_normalizers: diff --git a/dlt/common/schema/utils.py b/dlt/common/schema/utils.py index 3e649cbf12..dc243f50dd 100644 --- a/dlt/common/schema/utils.py +++ b/dlt/common/schema/utils.py @@ -7,12 +7,12 @@ from dlt.common import json from dlt.common.data_types import TDataType -from dlt.common.exceptions import DictValidationException, MissingDependencyException +from dlt.common.exceptions import DictValidationException from dlt.common.normalizers import explicit_normalizers from dlt.common.normalizers.naming import NamingConvention from dlt.common.normalizers.naming.snake_case import NamingConvention as SnakeCase -from dlt.common.typing import DictStrAny, REPattern, is_dict_generic_type -from dlt.common.validation import TCustomValidator, validate_dict, validate_dict_ignoring_xkeys +from dlt.common.typing import DictStrAny, REPattern +from dlt.common.validation import TCustomValidator, validate_dict_ignoring_xkeys from dlt.common.schema import detections from dlt.common.schema.typing import ( COLUMN_HINTS, @@ -37,7 +37,6 @@ TTypeDetections, TWriteDisposition, TSchemaContract, - TSchemaContractDict, ) from dlt.common.schema.exceptions import ( CannotCoerceColumnException, @@ -168,8 +167,8 @@ def add_column_defaults(column: TColumnSchemaBase) -> TColumnSchema: # return copy(column) # type: ignore -def bump_version_if_modified(stored_schema: TStoredSchema) -> Tuple[int, str, str, List[str]]: - """Bumps the `stored_schema` version and version hash if content modified, returns (new version, new hash, old hash) tuple""" +def bump_version_if_modified(stored_schema: TStoredSchema) -> Tuple[int, str, str, Sequence[str]]: + """Bumps the `stored_schema` version and version hash if content modified, returns (new version, new hash, old hash, 10 last hashes) tuple""" hash_ = generate_version_hash(stored_schema) previous_hash = stored_schema.get("version_hash") if not previous_hash: @@ -188,14 +187,14 @@ def bump_version_if_modified(stored_schema: TStoredSchema) -> Tuple[int, str, st def generate_version_hash(stored_schema: TStoredSchema) -> str: # generates hash out of stored schema content, excluding the hash itself and version - schema_copy = deepcopy(stored_schema) + schema_copy = copy(stored_schema) schema_copy.pop("version") schema_copy.pop("version_hash", None) schema_copy.pop("imported_version_hash", None) schema_copy.pop("previous_hashes", None) # ignore order of elements when computing the hash - content = json.dumps(schema_copy, sort_keys=True) - h = hashlib.sha3_256(content.encode("utf-8")) + content = json.dumpb(schema_copy, sort_keys=True) + h = hashlib.sha3_256(content) # additionally check column order table_names = sorted((schema_copy.get("tables") or {}).keys()) if table_names: diff --git a/dlt/common/storages/__init__.py b/dlt/common/storages/__init__.py index 9beb3c0597..e5feeaba57 100644 --- a/dlt/common/storages/__init__.py +++ b/dlt/common/storages/__init__.py @@ -3,8 +3,15 @@ from .schema_storage import SchemaStorage from .live_schema_storage import LiveSchemaStorage from .normalize_storage import NormalizeStorage -from .load_storage import LoadStorage +from .load_package import ( + ParsedLoadJobFileName, + LoadJobInfo, + LoadPackageInfo, + PackageStorage, + TJobState, +) from .data_item_storage import DataItemStorage +from .load_storage import LoadStorage from .configuration import ( LoadStorageConfiguration, NormalizeStorageConfiguration, @@ -28,6 +35,11 @@ "SchemaStorageConfiguration", "TSchemaFileFormat", "FilesystemConfiguration", + "ParsedLoadJobFileName", + "LoadJobInfo", + "LoadPackageInfo", + "PackageStorage", + "TJobState", "fsspec_from_config", "fsspec_filesystem", ] diff --git a/dlt/common/storages/data_item_storage.py b/dlt/common/storages/data_item_storage.py index 4fb115757b..04e5302794 100644 --- a/dlt/common/storages/data_item_storage.py +++ b/dlt/common/storages/data_item_storage.py @@ -1,9 +1,10 @@ -from typing import Dict, Any, List, Generic +from pathlib import Path +from typing import Dict, Any, List, Sequence from abc import ABC, abstractmethod from dlt.common import logger from dlt.common.schema import TTableSchemaColumns -from dlt.common.typing import TDataItems +from dlt.common.typing import StrAny, TDataItems from dlt.common.data_writers import TLoaderFileFormat, BufferedDataWriter, DataWriter @@ -44,10 +45,10 @@ def write_empty_file( writer = self.get_writer(load_id, schema_name, table_name) writer.write_empty_file(columns) - def close_writers(self, extract_id: str) -> None: + def close_writers(self, load_id: str) -> None: # flush and close all files for name, writer in self.buffered_writers.items(): - if name.startswith(extract_id): + if name.startswith(load_id) and not writer.closed: logger.debug( f"Closing writer for {name} with file {writer._file} and actual name" f" {writer._file_name}" @@ -61,7 +62,28 @@ def closed_files(self) -> List[str]: return files + def _write_temp_job_file( + self, + load_id: str, + table_name: str, + table: TTableSchemaColumns, + file_id: str, + rows: Sequence[StrAny], + ) -> str: + """Writes new file into new packages "new_jobs". Intended for testing""" + file_name = ( + self._get_data_item_path_template(load_id, None, table_name) % file_id + + "." + + self.loader_file_format + ) + format_spec = DataWriter.data_format_from_file_format(self.loader_file_format) + mode = "wb" if format_spec.is_binary_format else "w" + with self.storage.open_file(file_name, mode=mode) as f: # type: ignore[attr-defined] + writer = DataWriter.from_file_format(self.loader_file_format, f) + writer.write_all(table, rows) + return Path(file_name).name + @abstractmethod def _get_data_item_path_template(self, load_id: str, schema_name: str, table_name: str) -> str: - # note: use %s for file id to create required template format + """Returns a file template for item writer. note: use %s for file id to create required template format""" pass diff --git a/dlt/common/storages/exceptions.py b/dlt/common/storages/exceptions.py index 8683679a7f..30f372e692 100644 --- a/dlt/common/storages/exceptions.py +++ b/dlt/common/storages/exceptions.py @@ -1,7 +1,7 @@ import semver from typing import Iterable -from dlt.common.exceptions import DltException +from dlt.common.exceptions import DltException, TerminalValueError from dlt.common.data_writers import TLoaderFileFormat @@ -43,11 +43,27 @@ def __init__( ) +class StorageMigrationError(StorageException): + def __init__( + self, + storage_path: str, + from_version: semver.VersionInfo, + target_version: semver.VersionInfo, + info: str, + ) -> None: + self.storage_path = storage_path + self.from_version = from_version + self.target_version = target_version + super().__init__( + f"Storage {storage_path} with target v {target_version} at {from_version}: " + info + ) + + class LoadStorageException(StorageException): pass -class JobWithUnsupportedWriterException(LoadStorageException): +class JobWithUnsupportedWriterException(LoadStorageException, TerminalValueError): def __init__( self, load_id: str, expected_file_formats: Iterable[TLoaderFileFormat], wrong_job: str ) -> None: diff --git a/dlt/common/storages/file_storage.py b/dlt/common/storages/file_storage.py index 71c78a9b9d..7fe62a9728 100644 --- a/dlt/common/storages/file_storage.py +++ b/dlt/common/storages/file_storage.py @@ -286,7 +286,11 @@ def get_file_name_from_file_path(file_path: str) -> str: @staticmethod def validate_file_name_component(name: str) -> None: # Universal platform bans several characters allowed in POSIX ie. | < \ or "COM1" :) - pathvalidate.validate_filename(name, platform="Universal") + try: + pathvalidate.validate_filename(name, platform="Universal") + except pathvalidate.error.ValidationError as val_ex: + if val_ex.reason != pathvalidate.ErrorReason.INVALID_LENGTH: + raise # component cannot contain "." if FILE_COMPONENT_INVALID_CHARACTERS.search(name): raise pathvalidate.error.InvalidCharError( diff --git a/dlt/common/storages/load_package.py b/dlt/common/storages/load_package.py new file mode 100644 index 0000000000..be4194de3a --- /dev/null +++ b/dlt/common/storages/load_package.py @@ -0,0 +1,483 @@ +import contextlib +import os +from copy import deepcopy +import datetime # noqa: 251 +import humanize +from pathlib import Path +from pendulum.datetime import DateTime +from typing import ( + ClassVar, + Dict, + List, + NamedTuple, + Literal, + Optional, + Sequence, + Set, + get_args, + cast, +) + +from dlt.common import pendulum, json +from dlt.common.data_writers.writers import DataWriter +from dlt.common.destination import TLoaderFileFormat +from dlt.common.exceptions import TerminalValueError +from dlt.common.schema import Schema, TSchemaTables +from dlt.common.schema.typing import TStoredSchema, TTableSchemaColumns +from dlt.common.storages import FileStorage +from dlt.common.storages.exceptions import LoadPackageNotFound +from dlt.common.typing import DictStrAny, StrAny +from dlt.common.utils import flatten_list_or_items + +# folders to manage load jobs in a single load package +TJobState = Literal["new_jobs", "failed_jobs", "started_jobs", "completed_jobs"] +WORKING_FOLDERS: Set[TJobState] = set(get_args(TJobState)) +TLoadPackageState = Literal["new", "extracted", "normalized", "loaded", "aborted"] + + +class ParsedLoadJobFileName(NamedTuple): + table_name: str + file_id: str + retry_count: int + file_format: TLoaderFileFormat + + def job_id(self) -> str: + return f"{self.table_name}.{self.file_id}.{int(self.retry_count)}.{self.file_format}" + + @staticmethod + def parse(file_name: str) -> "ParsedLoadJobFileName": + p = Path(file_name) + parts = p.name.split(".") + if len(parts) != 4: + raise TerminalValueError(parts) + + return ParsedLoadJobFileName( + parts[0], parts[1], int(parts[2]), cast(TLoaderFileFormat, parts[3]) + ) + + def __str__(self) -> str: + return self.job_id() + + +class LoadJobInfo(NamedTuple): + state: TJobState + file_path: str + file_size: int + created_at: datetime.datetime + elapsed: float + job_file_info: ParsedLoadJobFileName + failed_message: str + + def asdict(self) -> DictStrAny: + d = self._asdict() + # flatten + del d["job_file_info"] + d.update(self.job_file_info._asdict()) + return d + + def asstr(self, verbosity: int = 0) -> str: + failed_msg = ( + "The job FAILED TERMINALLY and cannot be restarted." if self.failed_message else "" + ) + elapsed_msg = ( + humanize.precisedelta(pendulum.duration(seconds=self.elapsed)) + if self.elapsed + else "---" + ) + msg = ( + f"Job: {self.job_file_info.job_id()}, table: {self.job_file_info.table_name} in" + f" {self.state}. " + ) + msg += ( + f"File type: {self.job_file_info.file_format}, size:" + f" {humanize.naturalsize(self.file_size, binary=True, gnu=True)}. " + ) + msg += f"Started on: {self.created_at} and completed in {elapsed_msg}." + if failed_msg: + msg += "\nThe job FAILED TERMINALLY and cannot be restarted." + if verbosity > 0: + msg += "\n" + self.failed_message + return msg + + def __str__(self) -> str: + return self.asstr(verbosity=0) + + +class LoadPackageInfo(NamedTuple): + load_id: str + package_path: str + state: TLoadPackageState + schema_name: str + schema_hash: str + schema_update: TSchemaTables + completed_at: datetime.datetime + jobs: Dict[TJobState, List[LoadJobInfo]] + + def asdict(self) -> DictStrAny: + d = self._asdict() + # job as list + d["jobs"] = [job.asdict() for job in flatten_list_or_items(iter(self.jobs.values()))] # type: ignore + # flatten update into list of columns + tables: List[DictStrAny] = deepcopy(list(self.schema_update.values())) # type: ignore + for table in tables: + table.pop("filters", None) + columns: List[DictStrAny] = [] + table["schema_name"] = self.schema_name + table["load_id"] = self.load_id + for column in table["columns"].values(): + column["table_name"] = table["name"] + column["schema_name"] = self.schema_name + column["load_id"] = self.load_id + columns.append(column) + table["columns"] = columns + d.pop("schema_update") + d["tables"] = tables + d["schema_hash"] = self.schema_hash + return d + + def asstr(self, verbosity: int = 0) -> str: + completed_msg = ( + f"The package was {self.state.upper()} at {self.completed_at}" + if self.completed_at + else "The package is being PROCESSED" + ) + msg = ( + f"The package with load id {self.load_id} for schema {self.schema_name} is in" + f" {self.state} state. It updated schema for {len(self.schema_update)} tables." + f" {completed_msg}.\n" + ) + msg += "Jobs details:\n" + msg += "\n".join(job.asstr(verbosity) for job in flatten_list_or_items(iter(self.jobs.values()))) # type: ignore + return msg + + def __str__(self) -> str: + return self.asstr(verbosity=0) + + +class PackageStorage: + NEW_JOBS_FOLDER: ClassVar[TJobState] = "new_jobs" + FAILED_JOBS_FOLDER: ClassVar[TJobState] = "failed_jobs" + STARTED_JOBS_FOLDER: ClassVar[TJobState] = "started_jobs" + COMPLETED_JOBS_FOLDER: ClassVar[TJobState] = "completed_jobs" + + SCHEMA_FILE_NAME: ClassVar[str] = "schema.json" + SCHEMA_UPDATES_FILE_NAME = ( # updates to the tables in schema created by normalizer + "schema_updates.json" + ) + APPLIED_SCHEMA_UPDATES_FILE_NAME = ( + "applied_" + "schema_updates.json" + ) # updates applied to the destination + PACKAGE_COMPLETED_FILE_NAME = ( # completed package marker file, currently only to store data with os.stat + "package_completed.json" + ) + + def __init__(self, storage: FileStorage, initial_state: TLoadPackageState) -> None: + """Creates storage that manages load packages with root at `storage` and initial package state `initial_state`""" + self.storage = storage + self.initial_state = initial_state + + # + # List jobs + # + + def get_package_path(self, load_id: str) -> str: + return load_id + + def get_job_folder_path(self, load_id: str, folder: TJobState) -> str: + return os.path.join(self.get_package_path(load_id), folder) + + def get_job_file_path(self, load_id: str, folder: TJobState, file_name: str) -> str: + return os.path.join(self.get_job_folder_path(load_id, folder), file_name) + + def list_packages(self) -> Sequence[str]: + """Lists all load ids in storage, earliest first + + NOTE: Load ids are sorted alphabetically. This class does not store package creation time separately. + """ + loads = self.storage.list_folder_dirs(".", to_root=False) + # start from the oldest packages + return sorted(loads) + + def list_new_jobs(self, load_id: str) -> Sequence[str]: + new_jobs = self.storage.list_folder_files( + self.get_job_folder_path(load_id, PackageStorage.NEW_JOBS_FOLDER) + ) + return new_jobs + + def list_started_jobs(self, load_id: str) -> Sequence[str]: + return self.storage.list_folder_files( + self.get_job_folder_path(load_id, PackageStorage.STARTED_JOBS_FOLDER) + ) + + def list_failed_jobs(self, load_id: str) -> Sequence[str]: + return self.storage.list_folder_files( + self.get_job_folder_path(load_id, PackageStorage.FAILED_JOBS_FOLDER) + ) + + def list_jobs_for_table(self, load_id: str, table_name: str) -> Sequence[LoadJobInfo]: + return [ + job for job in self.list_all_jobs(load_id) if job.job_file_info.table_name == table_name + ] + + def list_all_jobs(self, load_id: str) -> Sequence[LoadJobInfo]: + info = self.get_load_package_info(load_id) + return [job for job in flatten_list_or_items(iter(info.jobs.values()))] # type: ignore + + def list_failed_jobs_infos(self, load_id: str) -> Sequence[LoadJobInfo]: + """List all failed jobs and associated error messages for a load package with `load_id`""" + failed_jobs: List[LoadJobInfo] = [] + package_path = self.get_package_path(load_id) + package_created_at = pendulum.from_timestamp( + os.path.getmtime( + self.storage.make_full_path( + os.path.join(package_path, PackageStorage.PACKAGE_COMPLETED_FILE_NAME) + ) + ) + ) + for file in self.list_failed_jobs(load_id): + if not file.endswith(".exception"): + failed_jobs.append( + self._read_job_file_info("failed_jobs", file, package_created_at) + ) + return failed_jobs + + # + # Move jobs + # + + def import_job( + self, load_id: str, job_file_path: str, job_state: TJobState = "new_jobs" + ) -> None: + """Adds new job by moving the `job_file_path` into `new_jobs` of package `load_id`""" + self.storage.atomic_import(job_file_path, self.get_job_folder_path(load_id, job_state)) + + def start_job(self, load_id: str, file_name: str) -> str: + return self._move_job( + load_id, PackageStorage.NEW_JOBS_FOLDER, PackageStorage.STARTED_JOBS_FOLDER, file_name + ) + + def fail_job(self, load_id: str, file_name: str, failed_message: Optional[str]) -> str: + # save the exception to failed jobs + if failed_message: + self.storage.save( + self.get_job_file_path( + load_id, PackageStorage.FAILED_JOBS_FOLDER, file_name + ".exception" + ), + failed_message, + ) + # move to failed jobs + return self._move_job( + load_id, + PackageStorage.STARTED_JOBS_FOLDER, + PackageStorage.FAILED_JOBS_FOLDER, + file_name, + ) + + def retry_job(self, load_id: str, file_name: str) -> str: + # when retrying job we must increase the retry count + source_fn = ParsedLoadJobFileName.parse(file_name) + dest_fn = ParsedLoadJobFileName( + source_fn.table_name, + source_fn.file_id, + source_fn.retry_count + 1, + source_fn.file_format, + ) + # move it directly to new file name + return self._move_job( + load_id, + PackageStorage.STARTED_JOBS_FOLDER, + PackageStorage.NEW_JOBS_FOLDER, + file_name, + dest_fn.job_id(), + ) + + def complete_job(self, load_id: str, file_name: str) -> str: + return self._move_job( + load_id, + PackageStorage.STARTED_JOBS_FOLDER, + PackageStorage.COMPLETED_JOBS_FOLDER, + file_name, + ) + + # + # Create and drop entities + # + + def create_package(self, load_id: str) -> None: + self.storage.create_folder(load_id) + # create processing directories + self.storage.create_folder(os.path.join(load_id, PackageStorage.NEW_JOBS_FOLDER)) + self.storage.create_folder(os.path.join(load_id, PackageStorage.COMPLETED_JOBS_FOLDER)) + self.storage.create_folder(os.path.join(load_id, PackageStorage.FAILED_JOBS_FOLDER)) + self.storage.create_folder(os.path.join(load_id, PackageStorage.STARTED_JOBS_FOLDER)) + + def complete_package( + self, load_id: str, load_state: TLoadPackageState, delete_completed_jobs: bool + ) -> str: + """Completes loading the package by writing marker file with `package_state` and optionally deleting completed jobs + + If package has failed jobs, nothing gets deleted. Returns path to the completed package + """ + load_path = self.get_package_path(load_id) + has_failed_jobs = len(self.list_failed_jobs(load_id)) > 0 + # delete completed jobs + if delete_completed_jobs and not has_failed_jobs: + self.storage.delete_folder( + self.get_job_folder_path(load_id, PackageStorage.COMPLETED_JOBS_FOLDER), + recursively=True, + ) + # save marker file + self.storage.save( + os.path.join(load_path, PackageStorage.PACKAGE_COMPLETED_FILE_NAME), load_state + ) + return load_path + + def delete_package(self, load_id: str) -> None: + package_path = self.get_package_path(load_id) + if not self.storage.has_folder(package_path): + raise LoadPackageNotFound(load_id) + self.storage.delete_folder(package_path, recursively=True) + + def load_schema(self, load_id: str) -> Schema: + return Schema.from_dict(self._load_schema(load_id)) + + def schema_name(self, load_id: str) -> str: + """Gets schema name associated with the package""" + schema_dict: TStoredSchema = self._load_schema(load_id) # type: ignore[assignment] + return schema_dict["name"] + + def save_schema(self, load_id: str, schema: Schema) -> str: + # save a schema to a temporary load package + dump = json.dumps(schema.to_dict()) + return self.storage.save(os.path.join(load_id, PackageStorage.SCHEMA_FILE_NAME), dump) + + def save_schema_updates(self, load_id: str, schema_update: TSchemaTables) -> None: + with self.storage.open_file( + os.path.join(load_id, PackageStorage.SCHEMA_UPDATES_FILE_NAME), mode="wb" + ) as f: + json.dump(schema_update, f) + + # + # Get package info + # + + def get_load_package_info(self, load_id: str) -> LoadPackageInfo: + """Gets information on normalized/completed package with given load_id, all jobs and their statuses.""" + package_path = self.get_package_path(load_id) + if not self.storage.has_folder(package_path): + raise LoadPackageNotFound(load_id) + + package_created_at: DateTime = None + package_state = self.initial_state + applied_update: TSchemaTables = {} + + # check if package completed + completed_file_path = os.path.join(package_path, PackageStorage.PACKAGE_COMPLETED_FILE_NAME) + if self.storage.has_file(completed_file_path): + package_created_at = pendulum.from_timestamp( + os.path.getmtime(self.storage.make_full_path(completed_file_path)) + ) + package_state = self.storage.load(completed_file_path) + + # check if schema updates applied + applied_schema_update_file = os.path.join( + package_path, PackageStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME + ) + if self.storage.has_file(applied_schema_update_file): + applied_update = json.loads(self.storage.load(applied_schema_update_file)) + schema = Schema.from_dict(self._load_schema(load_id)) + + # read jobs with all statuses + all_jobs: Dict[TJobState, List[LoadJobInfo]] = {} + for state in WORKING_FOLDERS: + jobs: List[LoadJobInfo] = [] + with contextlib.suppress(FileNotFoundError): + # we ignore if load package lacks one of working folders. completed_jobs may be deleted on archiving + for file in self.storage.list_folder_files(os.path.join(package_path, state)): + if not file.endswith(".exception"): + jobs.append(self._read_job_file_info(state, file, package_created_at)) + all_jobs[state] = jobs + + return LoadPackageInfo( + load_id, + self.storage.make_full_path(package_path), + package_state, + schema.name, + schema.version_hash, + applied_update, + package_created_at, + all_jobs, + ) + + def _read_job_file_info(self, state: TJobState, file: str, now: DateTime = None) -> LoadJobInfo: + try: + failed_message = self.storage.load(file + ".exception") + except FileNotFoundError: + failed_message = None + full_path = self.storage.make_full_path(file) + st = os.stat(full_path) + return LoadJobInfo( + state, + full_path, + st.st_size, + pendulum.from_timestamp(st.st_mtime), + PackageStorage._job_elapsed_time_seconds(full_path, now.timestamp() if now else None), + ParsedLoadJobFileName.parse(file), + failed_message, + ) + + def _move_job( + self, + load_id: str, + source_folder: TJobState, + dest_folder: TJobState, + file_name: str, + new_file_name: str = None, + ) -> str: + # ensure we move file names, not paths + assert file_name == FileStorage.get_file_name_from_file_path(file_name) + load_path = self.get_package_path(load_id) + dest_path = os.path.join(load_path, dest_folder, new_file_name or file_name) + self.storage.atomic_rename(os.path.join(load_path, source_folder, file_name), dest_path) + # print(f"{join(load_path, source_folder, file_name)} -> {dest_path}") + return self.storage.make_full_path(dest_path) + + def _load_schema(self, load_id: str) -> DictStrAny: + schema_path = os.path.join(load_id, PackageStorage.SCHEMA_FILE_NAME) + return json.loads(self.storage.load(schema_path)) # type: ignore[no-any-return] + + @staticmethod + def build_job_file_name( + table_name: str, + file_id: str, + retry_count: int = 0, + validate_components: bool = True, + loader_file_format: TLoaderFileFormat = None, + ) -> str: + if validate_components: + FileStorage.validate_file_name_component(table_name) + fn = f"{table_name}.{file_id}.{int(retry_count)}" + if loader_file_format: + format_spec = DataWriter.data_format_from_file_format(loader_file_format) + return fn + f".{format_spec.file_extension}" + return fn + + @staticmethod + def is_package_partially_loaded(package_info: LoadPackageInfo) -> bool: + """Checks if package is partially loaded - has jobs that are not new.""" + if package_info.state == "normalized": + pending_jobs: Sequence[TJobState] = ["new_jobs"] + else: + pending_jobs = ["completed_jobs", "failed_jobs"] + return ( + sum( + len(package_info.jobs[job_state]) + for job_state in WORKING_FOLDERS + if job_state not in pending_jobs + ) + > 0 + ) + + @staticmethod + def _job_elapsed_time_seconds(file_path: str, now_ts: float = None) -> float: + return (now_ts or pendulum.now().timestamp()) - os.path.getmtime(file_path) diff --git a/dlt/common/storages/load_storage.py b/dlt/common/storages/load_storage.py index 0518b07232..70878758c3 100644 --- a/dlt/common/storages/load_storage.py +++ b/dlt/common/storages/load_storage.py @@ -1,184 +1,32 @@ -import contextlib -from copy import deepcopy -import os -import datetime # noqa: 251 -import humanize from os.path import join -from pathlib import Path -from pendulum.datetime import DateTime -from typing import ( - Dict, - Iterable, - List, - NamedTuple, - Literal, - Optional, - Sequence, - Set, - get_args, - cast, -) +from typing import Iterable, Optional, Sequence -from dlt.common import json, pendulum +from dlt.common import json from dlt.common.configuration import known_sections from dlt.common.configuration.inject import with_config -from dlt.common.typing import DictStrAny, StrAny -from dlt.common.storages.file_storage import FileStorage -from dlt.common.data_writers import DataWriter from dlt.common.destination import ALL_SUPPORTED_FILE_FORMATS, TLoaderFileFormat from dlt.common.configuration.accessors import config from dlt.common.exceptions import TerminalValueError -from dlt.common.schema import Schema, TSchemaTables, TTableSchemaColumns -from dlt.common.schema.typing import TStoredSchema +from dlt.common.schema import TSchemaTables +from dlt.common.storages.file_storage import FileStorage from dlt.common.storages.configuration import LoadStorageConfiguration from dlt.common.storages.versioned_storage import VersionedStorage from dlt.common.storages.data_item_storage import DataItemStorage +from dlt.common.storages.load_package import ( + LoadJobInfo, + LoadPackageInfo, + PackageStorage, + ParsedLoadJobFileName, + TJobState, +) from dlt.common.storages.exceptions import JobWithUnsupportedWriterException, LoadPackageNotFound -from dlt.common.utils import flatten_list_or_items - - -# folders to manage load jobs in a single load package -TJobState = Literal["new_jobs", "failed_jobs", "started_jobs", "completed_jobs"] -WORKING_FOLDERS: Set[TJobState] = set(get_args(TJobState)) -TLoadPackageState = Literal["normalized", "loaded", "aborted"] - - -class ParsedLoadJobFileName(NamedTuple): - table_name: str - file_id: str - retry_count: int - file_format: TLoaderFileFormat - - def job_id(self) -> str: - return f"{self.table_name}.{self.file_id}.{int(self.retry_count)}.{self.file_format}" - - @staticmethod - def parse(file_name: str) -> "ParsedLoadJobFileName": - p = Path(file_name) - parts = p.name.split(".") - if len(parts) != 4: - raise TerminalValueError(parts) - - return ParsedLoadJobFileName( - parts[0], parts[1], int(parts[2]), cast(TLoaderFileFormat, parts[3]) - ) - - -class LoadJobInfo(NamedTuple): - state: TJobState - file_path: str - file_size: int - created_at: datetime.datetime - elapsed: float - job_file_info: ParsedLoadJobFileName - failed_message: str - - def asdict(self) -> DictStrAny: - d = self._asdict() - # flatten - del d["job_file_info"] - d.update(self.job_file_info._asdict()) - return d - - def asstr(self, verbosity: int = 0) -> str: - failed_msg = ( - "The job FAILED TERMINALLY and cannot be restarted." if self.failed_message else "" - ) - elapsed_msg = ( - humanize.precisedelta(pendulum.duration(seconds=self.elapsed)) - if self.elapsed - else "---" - ) - msg = ( - f"Job: {self.job_file_info.job_id()}, table: {self.job_file_info.table_name} in" - f" {self.state}. " - ) - msg += ( - f"File type: {self.job_file_info.file_format}, size:" - f" {humanize.naturalsize(self.file_size, binary=True, gnu=True)}. " - ) - msg += f"Started on: {self.created_at} and completed in {elapsed_msg}." - if failed_msg: - msg += "\nThe job FAILED TERMINALLY and cannot be restarted." - if verbosity > 0: - msg += "\n" + self.failed_message - return msg - - def __str__(self) -> str: - return self.asstr(verbosity=0) - - -class LoadPackageInfo(NamedTuple): - load_id: str - package_path: str - state: TLoadPackageState - schema_name: str - schema_hash: str - schema_update: TSchemaTables - completed_at: datetime.datetime - jobs: Dict[TJobState, List[LoadJobInfo]] - - def asdict(self) -> DictStrAny: - d = self._asdict() - # job as list - d["jobs"] = [job.asdict() for job in flatten_list_or_items(iter(self.jobs.values()))] # type: ignore - # flatten update into list of columns - tables: List[DictStrAny] = deepcopy(list(self.schema_update.values())) # type: ignore - for table in tables: - table.pop("filters", None) - columns: List[DictStrAny] = [] - table["schema_name"] = self.schema_name - table["load_id"] = self.load_id - for column in table["columns"].values(): - column["table_name"] = table["name"] - column["schema_name"] = self.schema_name - column["load_id"] = self.load_id - columns.append(column) - table["columns"] = columns - d.pop("schema_update") - d["tables"] = tables - d["schema_hash"] = self.schema_hash - return d - - def asstr(self, verbosity: int = 0) -> str: - completed_msg = ( - f"The package was {self.state.upper()} at {self.completed_at}" - if self.completed_at - else "The package is being PROCESSED" - ) - msg = ( - f"The package with load id {self.load_id} for schema {self.schema_name} is in" - f" {self.state} state. It updated schema for {len(self.schema_update)} tables." - f" {completed_msg}.\n" - ) - msg += "Jobs details:\n" - msg += "\n".join(job.asstr(verbosity) for job in flatten_list_or_items(iter(self.jobs.values()))) # type: ignore - return msg - - def __str__(self) -> str: - return self.asstr(verbosity=0) class LoadStorage(DataItemStorage, VersionedStorage): STORAGE_VERSION = "1.0.0" NORMALIZED_FOLDER = "normalized" # folder within the volume where load packages are stored LOADED_FOLDER = "loaded" # folder to keep the loads that were completely processed - - NEW_JOBS_FOLDER: TJobState = "new_jobs" - FAILED_JOBS_FOLDER: TJobState = "failed_jobs" - STARTED_JOBS_FOLDER: TJobState = "started_jobs" - COMPLETED_JOBS_FOLDER: TJobState = "completed_jobs" - - SCHEMA_UPDATES_FILE_NAME = ( # updates to the tables in schema created by normalizer - "schema_updates.json" - ) - APPLIED_SCHEMA_UPDATES_FILE_NAME = ( - "applied_" + "schema_updates.json" - ) # updates applied to the destination - SCHEMA_FILE_NAME = "schema.json" # package schema - PACKAGE_COMPLETED_FILE_NAME = ( # completed package marker file, currently only to store data with os.stat - "package_completed.json" - ) + NEW_PACKAGES_FOLDER = "new" # folder where new packages are created ALL_SUPPORTED_FILE_FORMATS = ALL_SUPPORTED_FILE_FORMATS @@ -204,92 +52,39 @@ def __init__( ) if is_owner: self.initialize_storage() + # create package storages + self.new_packages = PackageStorage( + FileStorage(join(config.load_volume_path, LoadStorage.NEW_PACKAGES_FOLDER)), "new" + ) + self.normalized_packages = PackageStorage( + FileStorage(join(config.load_volume_path, LoadStorage.NORMALIZED_FOLDER)), "normalized" + ) + self.loaded_packages = PackageStorage( + FileStorage(join(config.load_volume_path, LoadStorage.LOADED_FOLDER)), "loaded" + ) def initialize_storage(self) -> None: - self.storage.create_folder(LoadStorage.LOADED_FOLDER, exists_ok=True) + self.storage.create_folder(LoadStorage.NEW_PACKAGES_FOLDER, exists_ok=True) self.storage.create_folder(LoadStorage.NORMALIZED_FOLDER, exists_ok=True) - - def create_temp_load_package(self, load_id: str) -> None: - # delete previous version - if self.storage.has_folder(load_id): - self.storage.delete_folder(load_id, recursively=True) - self.storage.create_folder(load_id) - # create processing directories - self.storage.create_folder(join(load_id, LoadStorage.NEW_JOBS_FOLDER)) - self.storage.create_folder(join(load_id, LoadStorage.COMPLETED_JOBS_FOLDER)) - self.storage.create_folder(join(load_id, LoadStorage.FAILED_JOBS_FOLDER)) - self.storage.create_folder(join(load_id, LoadStorage.STARTED_JOBS_FOLDER)) + self.storage.create_folder(LoadStorage.LOADED_FOLDER, exists_ok=True) def _get_data_item_path_template(self, load_id: str, _: str, table_name: str) -> str: - file_name = self.build_job_file_name(table_name, "%s", with_extension=False) - return self.storage.make_full_path(join(load_id, LoadStorage.NEW_JOBS_FOLDER, file_name)) - - def write_temp_job_file( - self, - load_id: str, - table_name: str, - table: TTableSchemaColumns, - file_id: str, - rows: Sequence[StrAny], - ) -> str: - file_name = ( - self._get_data_item_path_template(load_id, None, table_name) % file_id - + "." - + self.loader_file_format + # implements DataItemStorage._get_data_item_path_template + file_name = PackageStorage.build_job_file_name(table_name, "%s") + file_path = self.new_packages.get_job_file_path( + load_id, PackageStorage.NEW_JOBS_FOLDER, file_name ) - format_spec = DataWriter.data_format_from_file_format(self.loader_file_format) - mode = "wb" if format_spec.is_binary_format else "w" - with self.storage.open_file(file_name, mode=mode) as f: - writer = DataWriter.from_file_format(self.loader_file_format, f) - writer.write_all(table, rows) - return Path(file_name).name - - def load_package_schema(self, load_id: str) -> Schema: - # load schema from a load package to be processed - schema_path = join(self.get_normalized_package_path(load_id), LoadStorage.SCHEMA_FILE_NAME) - return self._load_schema(schema_path) - - def load_temp_schema(self, load_id: str) -> Schema: - # load schema from a temporary load package - schema_path = join(load_id, LoadStorage.SCHEMA_FILE_NAME) - return self._load_schema(schema_path) - - def save_temp_schema(self, schema: Schema, load_id: str) -> str: - # save a schema to a temporary load package - dump = json.dumps(schema.to_dict()) - return self.storage.save(join(load_id, LoadStorage.SCHEMA_FILE_NAME), dump) - - def save_temp_schema_updates(self, load_id: str, schema_update: TSchemaTables) -> None: - with self.storage.open_file( - join(load_id, LoadStorage.SCHEMA_UPDATES_FILE_NAME), mode="wb" - ) as f: - json.dump(schema_update, f) - - def commit_temp_load_package(self, load_id: str) -> None: - self.storage.rename_tree(load_id, self.get_normalized_package_path(load_id)) - - def list_normalized_packages(self) -> Sequence[str]: - """Lists all packages that are normalized and will be loaded or are currently loaded""" - loads = self.storage.list_folder_dirs(LoadStorage.NORMALIZED_FOLDER, to_root=False) - # start from the oldest packages - return sorted(loads) - - def list_completed_packages(self) -> Sequence[str]: - """List packages that are completely loaded""" - loads = self.storage.list_folder_dirs(LoadStorage.LOADED_FOLDER, to_root=False) - # start from the oldest packages - return sorted(loads) + return self.new_packages.storage.make_full_path(file_path) def list_new_jobs(self, load_id: str) -> Sequence[str]: - new_jobs = self.storage.list_folder_files( - self._get_job_folder_path(load_id, LoadStorage.NEW_JOBS_FOLDER) - ) - # make sure all jobs have supported writers + """Lists all jobs in new jobs folder of normalized package storage and checks if file formats are supported""" + new_jobs = self.normalized_packages.list_new_jobs(load_id) + # # make sure all jobs have supported writers wrong_job = next( ( j for j in new_jobs - if LoadStorage.parse_job_file_name(j).file_format not in self.supported_file_formats + if ParsedLoadJobFileName.parse(j).file_format not in self.supported_file_formats ), None, ) @@ -297,97 +92,28 @@ def list_new_jobs(self, load_id: str) -> Sequence[str]: raise JobWithUnsupportedWriterException(load_id, self.supported_file_formats, wrong_job) return new_jobs - def list_started_jobs(self, load_id: str) -> Sequence[str]: - return self.storage.list_folder_files( - self._get_job_folder_path(load_id, LoadStorage.STARTED_JOBS_FOLDER) + def commit_new_load_package(self, load_id: str) -> None: + self.storage.rename_tree( + self.get_new_package_path(load_id), self.get_normalized_package_path(load_id) ) - def list_failed_jobs(self, load_id: str) -> Sequence[str]: - return self.storage.list_folder_files( - self._get_job_folder_path(load_id, LoadStorage.FAILED_JOBS_FOLDER) - ) - - def list_jobs_for_table(self, load_id: str, table_name: str) -> Sequence[LoadJobInfo]: - return [ - job for job in self.list_all_jobs(load_id) if job.job_file_info.table_name == table_name - ] - - def list_all_jobs(self, load_id: str) -> Sequence[LoadJobInfo]: - info = self.get_load_package_info(load_id) - return [job for job in flatten_list_or_items(iter(info.jobs.values()))] # type: ignore + def list_normalized_packages(self) -> Sequence[str]: + """Lists all packages that are normalized and will be loaded or are currently loaded""" + return self.normalized_packages.list_packages() - def list_completed_failed_jobs(self, load_id: str) -> Sequence[str]: - return self.storage.list_folder_files( - self._get_job_folder_completed_path(load_id, LoadStorage.FAILED_JOBS_FOLDER) - ) + def list_loaded_packages(self) -> Sequence[str]: + """List packages that are completely loaded""" + return self.loaded_packages.list_packages() - def list_failed_jobs_in_completed_package(self, load_id: str) -> Sequence[LoadJobInfo]: + def list_failed_jobs_in_loaded_package(self, load_id: str) -> Sequence[LoadJobInfo]: """List all failed jobs and associated error messages for a completed load package with `load_id`""" - failed_jobs: List[LoadJobInfo] = [] - package_path = self.get_completed_package_path(load_id) - package_created_at = pendulum.from_timestamp( - os.path.getmtime( - self.storage.make_full_path( - join(package_path, LoadStorage.PACKAGE_COMPLETED_FILE_NAME) - ) - ) - ) - for file in self.list_completed_failed_jobs(load_id): - if not file.endswith(".exception"): - failed_jobs.append( - self._read_job_file_info("failed_jobs", file, package_created_at) - ) - return failed_jobs - - def get_load_package_info(self, load_id: str) -> LoadPackageInfo: - """Gets information on normalized/completed package with given load_id, all jobs and their statuses.""" - # check if package is completed or in process - package_created_at: DateTime = None - package_state: TLoadPackageState = "normalized" - package_path = self.get_normalized_package_path(load_id) - applied_update: TSchemaTables = {} - if not self.storage.has_folder(package_path): - package_path = self.get_completed_package_path(load_id) - if not self.storage.has_folder(package_path): - raise LoadPackageNotFound(load_id) - completed_file_path = self.storage.make_full_path( - join(package_path, LoadStorage.PACKAGE_COMPLETED_FILE_NAME) - ) - package_created_at = pendulum.from_timestamp(os.path.getmtime(completed_file_path)) - package_state = self.storage.load(completed_file_path) - applied_schema_update_file = join( - package_path, LoadStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME - ) - if self.storage.has_file(applied_schema_update_file): - applied_update = json.loads(self.storage.load(applied_schema_update_file)) - schema = self._load_schema(join(package_path, LoadStorage.SCHEMA_FILE_NAME)) - # read jobs with all statuses - all_jobs: Dict[TJobState, List[LoadJobInfo]] = {} - for state in WORKING_FOLDERS: - jobs: List[LoadJobInfo] = [] - with contextlib.suppress(FileNotFoundError): - # we ignore if load package lacks one of working folders. completed_jobs may be deleted on archiving - for file in self.storage.list_folder_files(join(package_path, state)): - if not file.endswith(".exception"): - jobs.append(self._read_job_file_info(state, file, package_created_at)) - all_jobs[state] = jobs - - return LoadPackageInfo( - load_id, - self.storage.make_full_path(package_path), - package_state, - schema.name, - schema.version_hash, - applied_update, - package_created_at, - all_jobs, - ) + return self.loaded_packages.list_failed_jobs_infos(load_id) def begin_schema_update(self, load_id: str) -> Optional[TSchemaTables]: package_path = self.get_normalized_package_path(load_id) if not self.storage.has_folder(package_path): raise FileNotFoundError(package_path) - schema_update_file = join(package_path, LoadStorage.SCHEMA_UPDATES_FILE_NAME) + schema_update_file = join(package_path, PackageStorage.SCHEMA_UPDATES_FILE_NAME) if self.storage.has_file(schema_update_file): schema_update: TSchemaTables = json.loads(self.storage.load(schema_update_file)) return schema_update @@ -397,195 +123,59 @@ def begin_schema_update(self, load_id: str) -> Optional[TSchemaTables]: def commit_schema_update(self, load_id: str, applied_update: TSchemaTables) -> None: """Marks schema update as processed and stores the update that was applied at the destination""" load_path = self.get_normalized_package_path(load_id) - schema_update_file = join(load_path, LoadStorage.SCHEMA_UPDATES_FILE_NAME) - processed_schema_update_file = join(load_path, LoadStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME) + schema_update_file = join(load_path, PackageStorage.SCHEMA_UPDATES_FILE_NAME) + processed_schema_update_file = join( + load_path, PackageStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME + ) # delete initial schema update self.storage.delete(schema_update_file) # save applied update self.storage.save(processed_schema_update_file, json.dumps(applied_update)) - def add_new_job( + def import_new_job( self, load_id: str, job_file_path: str, job_state: TJobState = "new_jobs" ) -> None: """Adds new job by moving the `job_file_path` into `new_jobs` of package `load_id`""" - self.storage.atomic_import(job_file_path, self._get_job_folder_path(load_id, job_state)) - - def atomic_import(self, external_file_path: str, to_folder: str) -> str: - """Copies or links a file at `external_file_path` into the `to_folder` effectively importing file into storage""" - # LoadStorage.parse_job_file_name - return self.storage.to_relative_path( - FileStorage.move_atomic_to_folder( - external_file_path, self.storage.make_full_path(to_folder) - ) - ) - - def start_job(self, load_id: str, file_name: str) -> str: - return self._move_job( - load_id, LoadStorage.NEW_JOBS_FOLDER, LoadStorage.STARTED_JOBS_FOLDER, file_name - ) - - def fail_job(self, load_id: str, file_name: str, failed_message: Optional[str]) -> str: - # save the exception to failed jobs - if failed_message: - self.storage.save( - self._get_job_file_path( - load_id, LoadStorage.FAILED_JOBS_FOLDER, file_name + ".exception" - ), - failed_message, - ) - # move to failed jobs - return self._move_job( - load_id, LoadStorage.STARTED_JOBS_FOLDER, LoadStorage.FAILED_JOBS_FOLDER, file_name - ) - - def retry_job(self, load_id: str, file_name: str) -> str: - # when retrying job we must increase the retry count - source_fn = ParsedLoadJobFileName.parse(file_name) - dest_fn = ParsedLoadJobFileName( - source_fn.table_name, - source_fn.file_id, - source_fn.retry_count + 1, - source_fn.file_format, - ) - # move it directly to new file name - return self._move_job( - load_id, - LoadStorage.STARTED_JOBS_FOLDER, - LoadStorage.NEW_JOBS_FOLDER, - file_name, - dest_fn.job_id(), - ) - - def complete_job(self, load_id: str, file_name: str) -> str: - return self._move_job( - load_id, LoadStorage.STARTED_JOBS_FOLDER, LoadStorage.COMPLETED_JOBS_FOLDER, file_name - ) + # TODO: use normalize storage and add file type checks + return self.normalized_packages.import_job(load_id, job_file_path, job_state) + + # def atomic_import(self, external_file_path: str, to_folder: str) -> str: + # """Copies or links a file at `external_file_path` into the `to_folder` effectively importing file into storage""" + # # LoadStorage.parse_job_file_name + # return self.storage.to_relative_path( + # FileStorage.move_atomic_to_folder( + # external_file_path, self.storage.make_full_path(to_folder) + # ) + # ) def complete_load_package(self, load_id: str, aborted: bool) -> None: - load_path = self.get_normalized_package_path(load_id) - has_failed_jobs = len(self.list_failed_jobs(load_id)) > 0 - # delete completed jobs - if self.config.delete_completed_jobs and not has_failed_jobs: - self.storage.delete_folder( - self._get_job_folder_path(load_id, LoadStorage.COMPLETED_JOBS_FOLDER), - recursively=True, - ) - # save marker file - completed_state: TLoadPackageState = "aborted" if aborted else "loaded" - self.storage.save(join(load_path, LoadStorage.PACKAGE_COMPLETED_FILE_NAME), completed_state) + self.normalized_packages.complete_package( + load_id, "aborted" if aborted else "loaded", self.config.delete_completed_jobs + ) # move to completed - completed_path = self.get_completed_package_path(load_id) - self.storage.rename_tree(load_path, completed_path) + completed_path = self.get_loaded_package_path(load_id) + self.storage.rename_tree(self.get_normalized_package_path(load_id), completed_path) - def delete_completed_package(self, load_id: str) -> None: - package_path = self.get_completed_package_path(load_id) - if not self.storage.has_folder(package_path): - raise LoadPackageNotFound(load_id) - self.storage.delete_folder(package_path, recursively=True) + def delete_loaded_package(self, load_id: str) -> None: + self.loaded_packages.delete_package(load_id) def wipe_normalized_packages(self) -> None: self.storage.delete_folder(self.NORMALIZED_FOLDER, recursively=True) - def get_normalized_package_path(self, load_id: str) -> str: - return join(LoadStorage.NORMALIZED_FOLDER, load_id) - - def get_completed_package_path(self, load_id: str) -> str: - return join(LoadStorage.LOADED_FOLDER, load_id) - - def job_elapsed_time_seconds(self, file_path: str, now_ts: float = None) -> float: - return (now_ts or pendulum.now().timestamp()) - os.path.getmtime(file_path) - - def _save_schema(self, schema: Schema, load_id: str) -> str: - dump = json.dumps(schema.to_dict()) - schema_path = join(self.get_normalized_package_path(load_id), LoadStorage.SCHEMA_FILE_NAME) - return self.storage.save(schema_path, dump) - - def _load_schema(self, schema_path: str) -> Schema: - stored_schema: DictStrAny = json.loads(self.storage.load(schema_path)) - return Schema.from_dict(stored_schema) - - def _move_job( - self, - load_id: str, - source_folder: TJobState, - dest_folder: TJobState, - file_name: str, - new_file_name: str = None, - ) -> str: - # ensure we move file names, not paths - assert file_name == FileStorage.get_file_name_from_file_path(file_name) - load_path = self.get_normalized_package_path(load_id) - dest_path = join(load_path, dest_folder, new_file_name or file_name) - self.storage.atomic_rename(join(load_path, source_folder, file_name), dest_path) - # print(f"{join(load_path, source_folder, file_name)} -> {dest_path}") - return self.storage.make_full_path(dest_path) - - def _get_job_folder_path(self, load_id: str, folder: TJobState) -> str: - return join(self.get_normalized_package_path(load_id), folder) - - def _get_job_file_path(self, load_id: str, folder: TJobState, file_name: str) -> str: - return join(self._get_job_folder_path(load_id, folder), file_name) - - def _get_job_folder_completed_path(self, load_id: str, folder: TJobState) -> str: - return join(self.get_completed_package_path(load_id), folder) - - def _read_job_file_info(self, state: TJobState, file: str, now: DateTime = None) -> LoadJobInfo: - try: - failed_message = self.storage.load(file + ".exception") - except FileNotFoundError: - failed_message = None - full_path = self.storage.make_full_path(file) - st = os.stat(full_path) - return LoadJobInfo( - state, - full_path, - st.st_size, - pendulum.from_timestamp(st.st_mtime), - self.job_elapsed_time_seconds(full_path, now.timestamp() if now else None), - self.parse_job_file_name(file), - failed_message, - ) - - def build_job_file_name( - self, - table_name: str, - file_id: str, - retry_count: int = 0, - validate_components: bool = True, - with_extension: bool = True, - ) -> str: - if validate_components: - FileStorage.validate_file_name_component(table_name) - # FileStorage.validate_file_name_component(file_id) - fn = f"{table_name}.{file_id}.{int(retry_count)}" - if with_extension: - format_spec = DataWriter.data_format_from_file_format(self.loader_file_format) - return fn + f".{format_spec.file_extension}" - return fn + def get_new_package_path(self, load_id: str) -> str: + return join(LoadStorage.NEW_PACKAGES_FOLDER, self.new_packages.get_package_path(load_id)) - @staticmethod - def is_package_partially_loaded(package_info: LoadPackageInfo) -> bool: - """Checks if package is partially loaded - has jobs that are not new.""" - if package_info.state == "normalized": - pending_jobs: Sequence[TJobState] = ["new_jobs"] - else: - pending_jobs = ["completed_jobs", "failed_jobs"] - return ( - sum( - len(package_info.jobs[job_state]) - for job_state in WORKING_FOLDERS - if job_state not in pending_jobs - ) - > 0 + def get_normalized_package_path(self, load_id: str) -> str: + return join( + LoadStorage.NORMALIZED_FOLDER, self.normalized_packages.get_package_path(load_id) ) - @staticmethod - def parse_job_file_name(file_name: str) -> ParsedLoadJobFileName: - p = Path(file_name) - parts = p.name.split(".") - # verify we know the extension - ext: TLoaderFileFormat = parts[-1] # type: ignore - if ext not in LoadStorage.ALL_SUPPORTED_FILE_FORMATS: - raise TerminalValueError(ext) + def get_loaded_package_path(self, load_id: str) -> str: + return join(LoadStorage.LOADED_FOLDER, self.loaded_packages.get_package_path(load_id)) - return ParsedLoadJobFileName.parse(file_name) + def get_load_package_info(self, load_id: str) -> LoadPackageInfo: + """Gets information on normalized OR loaded package with given load_id, all jobs and their statuses.""" + try: + return self.loaded_packages.get_load_package_info(load_id) + except LoadPackageNotFound: + return self.normalized_packages.get_load_package_info(load_id) diff --git a/dlt/common/storages/normalize_storage.py b/dlt/common/storages/normalize_storage.py index 2d153bcb8f..8a247c2021 100644 --- a/dlt/common/storages/normalize_storage.py +++ b/dlt/common/storages/normalize_storage.py @@ -1,25 +1,22 @@ -from typing import ClassVar, Sequence, NamedTuple, Union -from itertools import groupby -from pathlib import Path +import os +import glob +import semver +from typing import ClassVar, Sequence + +from semver import VersionInfo from dlt.common.configuration import with_config, known_sections from dlt.common.configuration.accessors import config +from dlt.common.storages.exceptions import StorageMigrationError +from dlt.common.storages.versioned_storage import VersionedStorage from dlt.common.storages.file_storage import FileStorage +from dlt.common.storages.load_package import PackageStorage from dlt.common.storages.configuration import NormalizeStorageConfiguration -from dlt.common.storages.versioned_storage import VersionedStorage -from dlt.common.destination import TLoaderFileFormat, ALL_SUPPORTED_FILE_FORMATS -from dlt.common.exceptions import TerminalValueError - - -class TParsedNormalizeFileName(NamedTuple): - schema_name: str - table_name: str - file_id: str - file_format: TLoaderFileFormat +from dlt.common.utils import set_working_dir class NormalizeStorage(VersionedStorage): - STORAGE_VERSION: ClassVar[str] = "1.0.0" + STORAGE_VERSION: ClassVar[str] = "1.0.1" EXTRACTED_FOLDER: ClassVar[str] = ( "extracted" # folder within the volume where extracted files to be normalized are stored ) @@ -36,35 +33,39 @@ def __init__( self.config = config if is_owner: self.initialize_storage() + self.extracted_packages = PackageStorage( + FileStorage(os.path.join(self.storage.storage_path, NormalizeStorage.EXTRACTED_FOLDER)), + "extracted", + ) def initialize_storage(self) -> None: self.storage.create_folder(NormalizeStorage.EXTRACTED_FOLDER, exists_ok=True) def list_files_to_normalize_sorted(self) -> Sequence[str]: - return sorted(self.storage.list_folder_files(NormalizeStorage.EXTRACTED_FOLDER)) - - def group_by_schema(self, files: Sequence[str]) -> "groupby[str, str]": - return groupby(files, NormalizeStorage.get_schema_name) - - @staticmethod - def get_schema_name(file_name: str) -> str: - return NormalizeStorage.parse_normalize_file_name(file_name).schema_name - - @staticmethod - def build_extracted_file_stem(schema_name: str, table_name: str, file_id: str) -> str: - # builds file name with the extracted data to be passed to normalize - return f"{schema_name}.{table_name}.{file_id}" - - @staticmethod - def parse_normalize_file_name(file_name: str) -> TParsedNormalizeFileName: - # parse extracted file name and returns (events found, load id, schema_name) - file_name_p: Path = Path(file_name) - parts = file_name_p.name.split(".") - ext = parts[-1] - if ext not in ALL_SUPPORTED_FILE_FORMATS: - raise TerminalValueError(f"File format {ext} not supported. Filename: {file_name}") - return TParsedNormalizeFileName(*parts) # type: ignore[arg-type] + """Gets all data files in extracted packages storage. This method is compatible with current and all past storages""" + root_dir = os.path.join(self.storage.storage_path, NormalizeStorage.EXTRACTED_FOLDER) + with set_working_dir(root_dir): + files = glob.glob("**/*", recursive=True) + # return all files that are not schema files + return sorted( + [ + file + for file in files + if not file.endswith(PackageStorage.SCHEMA_FILE_NAME) and os.path.isfile(file) + ] + ) - def delete_extracted_files(self, files: Sequence[str]) -> None: - for file_name in files: - self.storage.delete(file_name) + def migrate_storage(self, from_version: VersionInfo, to_version: VersionInfo) -> None: + if from_version == "1.0.0" and from_version < to_version: + # get files in storage + if len(self.list_files_to_normalize_sorted()) > 0: + raise StorageMigrationError( + self.storage.storage_path, + from_version, + to_version, + f"There are extract files in {NormalizeStorage.EXTRACTED_FOLDER} folder." + " Storage will not migrate automatically duo to possible data loss. Delete the" + " files or normalize it with dlt 0.3.x", + ) + from_version = semver.VersionInfo.parse("1.0.1") + self._save_version(from_version) diff --git a/dlt/common/time.py b/dlt/common/time.py index 05c4c617dd..ed390c28bf 100644 --- a/dlt/common/time.py +++ b/dlt/common/time.py @@ -1,5 +1,5 @@ import contextlib -from typing import Any, Optional, Union, overload, TypeVar # noqa +from typing import Any, Optional, Union, overload, TypeVar, Callable # noqa import datetime # noqa: I251 from dlt.common.pendulum import pendulum, timedelta @@ -12,6 +12,18 @@ FUTURE_TIMESTAMP: float = 9999999999.0 DAY_DURATION_SEC: float = 24 * 60 * 60.0 +precise_time: Callable[[], float] = None +"""A precise timer using win_precise_time library on windows and time.time on other systems""" + +try: + import win_precise_time as wpt + + precise_time = wpt.time +except ImportError: + from time import time as _built_in_time + + precise_time = _built_in_time + def timestamp_within( timestamp: float, min_exclusive: Optional[float], max_inclusive: Optional[float] diff --git a/dlt/common/warnings.py b/dlt/common/warnings.py new file mode 100644 index 0000000000..9c62c69bf8 --- /dev/null +++ b/dlt/common/warnings.py @@ -0,0 +1,151 @@ +import functools +import warnings +import semver +import typing +import typing_extensions + +from dlt.version import __version__ + +VersionString = typing.Union[str, semver.VersionInfo] + + +class DltDeprecationWarning(DeprecationWarning): + """A dlt specific deprecation warning. + + This warning is raised when using deprecated functionality in dlt. It provides information on when the + deprecation was introduced and the expected version in which the corresponding functionality will be removed. + + Attributes: + message: Description of the warning. + since: Version in which the deprecation was introduced. + expected_due: Version in which the corresponding functionality is expected to be removed. + """ + + def __init__( + self, + message: str, + *args: typing.Any, + since: VersionString, + expected_due: VersionString = None, + ) -> None: + super().__init__(message, *args) + self.message = message.rstrip(".") + self.since = ( + since if isinstance(since, semver.VersionInfo) else semver.parse_version_info(since) + ) + if expected_due: + expected_due = ( + expected_due + if isinstance(expected_due, semver.VersionInfo) + else semver.parse_version_info(expected_due) + ) + self.expected_due = expected_due if expected_due is not None else self.since.bump_minor() + + def __str__(self) -> str: + message = ( + f"{self.message}. Deprecated in dlt {self.since} to be removed in {self.expected_due}." + ) + return message + + +class Dlt04DeprecationWarning(DltDeprecationWarning): + V04 = semver.parse_version_info("0.4.0") + + def __init__(self, message: str, *args: typing.Any, expected_due: VersionString = None) -> None: + super().__init__( + message, *args, since=Dlt04DeprecationWarning.V04, expected_due=expected_due + ) + + +# show dlt deprecations once +warnings.simplefilter("once", DltDeprecationWarning) + +if typing.TYPE_CHECKING or hasattr(typing_extensions, "deprecated"): + deprecated = typing_extensions.deprecated +else: + # ported from typing_extensions so versions older than 4.5.x may still be used + _T = typing.TypeVar("_T") + + def deprecated( + __msg: str, + *, + category: typing.Optional[typing.Type[Warning]] = DeprecationWarning, + stacklevel: int = 1, + ) -> typing.Callable[[_T], _T]: + """Indicate that a class, function or overload is deprecated. + + Usage: + + @deprecated("Use B instead") + class A: + pass + + @deprecated("Use g instead") + def f(): + pass + + @overload + @deprecated("int support is deprecated") + def g(x: int) -> int: ... + @overload + def g(x: str) -> int: ... + + When this decorator is applied to an object, the type checker + will generate a diagnostic on usage of the deprecated object. + + The warning specified by ``category`` will be emitted on use + of deprecated objects. For functions, that happens on calls; + for classes, on instantiation. If the ``category`` is ``None``, + no warning is emitted. The ``stacklevel`` determines where the + warning is emitted. If it is ``1`` (the default), the warning + is emitted at the direct caller of the deprecated object; if it + is higher, it is emitted further up the stack. + + The decorator sets the ``__deprecated__`` + attribute on the decorated object to the deprecation message + passed to the decorator. If applied to an overload, the decorator + must be after the ``@overload`` decorator for the attribute to + exist on the overload as returned by ``get_overloads()``. + + See PEP 702 for details. + + """ + + def decorator(__arg: _T) -> _T: + if category is None: + __arg.__deprecated__ = __msg + return __arg + elif isinstance(__arg, type): + original_new = __arg.__new__ + has_init = __arg.__init__ is not object.__init__ + + @functools.wraps(original_new) + def __new__(cls, *args, **kwargs): + warnings.warn(__msg, category=category, stacklevel=stacklevel + 1) + if original_new is not object.__new__: + return original_new(cls, *args, **kwargs) + # Mirrors a similar check in object.__new__. + elif not has_init and (args or kwargs): + raise TypeError(f"{cls.__name__}() takes no arguments") + else: + return original_new(cls) + + __arg.__new__ = staticmethod(__new__) + __arg.__deprecated__ = __new__.__deprecated__ = __msg + return __arg + elif callable(__arg): + + @functools.wraps(__arg) + def wrapper(*args, **kwargs): + warnings.warn(__msg, category=category, stacklevel=stacklevel + 1) + return __arg(*args, **kwargs) + + __arg.__deprecated__ = wrapper.__deprecated__ = __msg + return wrapper + else: + raise TypeError( + "@deprecated decorator with non-None category must be applied to " + f"a class or callable, not {__arg!r}" + ) + + return decorator diff --git a/dlt/destinations/impl/filesystem/filesystem.py b/dlt/destinations/impl/filesystem/filesystem.py index f3127639fc..3f553f38d9 100644 --- a/dlt/destinations/impl/filesystem/filesystem.py +++ b/dlt/destinations/impl/filesystem/filesystem.py @@ -7,7 +7,7 @@ from dlt.common import logger from dlt.common.schema import Schema, TSchemaTables, TTableSchema -from dlt.common.storages import FileStorage, LoadStorage, fsspec_from_config +from dlt.common.storages import FileStorage, ParsedLoadJobFileName, fsspec_from_config from dlt.common.destination import DestinationCapabilitiesContext from dlt.common.destination.reference import ( NewLoadJob, @@ -48,14 +48,13 @@ def __init__( config.layout, file_name, schema_name, load_id ) item = self.make_remote_path() - logger.info("PUT file {item}") fs_client.put_file(local_path, item) @staticmethod def make_destination_filename( layout: str, file_name: str, schema_name: str, load_id: str ) -> str: - job_info = LoadStorage.parse_job_file_name(file_name) + job_info = ParsedLoadJobFileName.parse(file_name) return path_utils.create_path( layout, schema_name=schema_name, @@ -146,7 +145,7 @@ def initialize_storage(self, truncate_tables: Iterable[str] = None) -> None: logger.info(f"Will truncate tables in {truncate_dir}") try: all_files = self.fs_client.ls(truncate_dir, detail=False, refresh=True) - logger.info(f"Found {len(all_files)} CANDIDATE files in {truncate_dir}") + # logger.info(f"Found {len(all_files)} CANDIDATE files in {truncate_dir}") # print(f"in truncate dir {truncate_dir}: {all_files}") for item in all_files: # check every file against all the prefixes diff --git a/dlt/extract/extract.py b/dlt/extract/extract.py index 6205c482f6..ff64e38982 100644 --- a/dlt/extract/extract.py +++ b/dlt/extract/extract.py @@ -20,7 +20,7 @@ def extract( - extract_id: str, + load_id: str, source: DltSource, storage: ExtractorStorage, collector: Collector = NULL_COLLECTOR, @@ -33,10 +33,10 @@ def extract( resources_with_items: Set[str] = set() extractors: Dict[TLoaderFileFormat, Extractor] = { "puae-jsonl": JsonLExtractor( - extract_id, storage, schema, resources_with_items, collector=collector + load_id, storage, schema, resources_with_items, collector=collector ), "arrow": ArrowExtractor( - extract_id, storage, schema, resources_with_items, collector=collector + load_id, storage, schema, resources_with_items, collector=collector ), } last_item_format: Optional[TLoaderFileFormat] = None @@ -86,7 +86,7 @@ def extract( collector.update("Resources", left_gens) # flush all buffered writers - storage.close_writers(extract_id) + storage.close_writers(load_id) def extract_with_schema( @@ -96,8 +96,8 @@ def extract_with_schema( max_parallel_items: int, workers: int, ) -> str: - # generate extract_id to be able to commit all the sources together later - extract_id = storage.create_extract_id() + # generate load package to be able to commit all the sources together later + load_id = storage.create_load_package(source.discover_schema()) with Container().injectable_context(SourceSchemaInjectableContext(source.schema)): # inject the config section with the current source name with inject_section( @@ -112,7 +112,7 @@ def extract_with_schema( if resource.write_disposition == "replace": reset_resource_state(resource.name) extract( - extract_id, + load_id, source, storage, collector, @@ -120,4 +120,4 @@ def extract_with_schema( workers=workers, ) - return extract_id + return load_id diff --git a/dlt/extract/extractors.py b/dlt/extract/extractors.py index f7159d478c..bbf6857630 100644 --- a/dlt/extract/extractors.py +++ b/dlt/extract/extractors.py @@ -45,7 +45,7 @@ class ExtractorConfiguration(BaseConfiguration): @with_config(spec=ExtractorConfiguration) def __init__( self, - extract_id: str, + load_id: str, storage: ExtractorStorage, schema: Schema, resources_with_items: Set[str], @@ -57,7 +57,7 @@ def __init__( self.naming = schema.naming self.collector = collector self.resources_with_items = resources_with_items - self.extract_id = extract_id + self.load_id = load_id self._table_contracts: Dict[str, TSchemaContractDict] = {} self._filtered_tables: Set[str] = set() self._filtered_columns: Dict[str, Dict[str, TSchemaEvolutionMode]] = {} @@ -94,7 +94,7 @@ def write_items(self, resource: DltResource, items: TDataItems, meta: Any) -> No def write_empty_file(self, table_name: str) -> None: table_name = self.naming.normalize_table_identifier(table_name) - self.storage.write_empty_file(self.extract_id, self.schema.name, table_name, None) + self.storage.write_empty_file(self.load_id, self.schema.name, table_name, None) def _get_static_table_name(self, resource: DltResource, meta: Any) -> Optional[str]: if resource._table_name_hint_fun: @@ -116,7 +116,7 @@ def _write_item( columns: TTableSchemaColumns = None, ) -> None: new_rows_count = self.storage.write_data_item( - self.extract_id, self.schema.name, table_name, items, columns + self.load_id, self.schema.name, table_name, items, columns ) self.collector.update(table_name, inc=new_rows_count) self.resources_with_items.add(resource_name) diff --git a/dlt/extract/source.py b/dlt/extract/source.py index 17fc7248a2..b1f59f7bda 100644 --- a/dlt/extract/source.py +++ b/dlt/extract/source.py @@ -347,10 +347,15 @@ def state(self) -> StrAny: with inject_section(self._get_config_section_context()): return source_state() - def clone(self) -> "DltSource": - """Creates a deep copy of the source where copies of schema, resources and pipes are created""" + def clone(self, with_name: str = None) -> "DltSource": + """Creates a deep copy of the source where copies of schema, resources and pipes are created. + + If `with_name` is provided, a schema is cloned with a changed name + """ # mind that resources and pipes are cloned when added to the DltResourcesDict in the source constructor - return DltSource(self.schema.clone(), self.section, list(self._resources.values())) + return DltSource( + self.schema.clone(with_name=with_name), self.section, list(self._resources.values()) + ) def __iter__(self) -> Iterator[TDataItem]: """Opens iterator that yields the data items from all the resources within the source in the same order as in Pipeline class. diff --git a/dlt/extract/storage.py b/dlt/extract/storage.py index f31bb0f702..3b5e959f69 100644 --- a/dlt/extract/storage.py +++ b/dlt/extract/storage.py @@ -1,34 +1,36 @@ import os -from typing import ClassVar, Dict +from typing import Dict +from dlt.common import pendulum from dlt.common.data_writers import TLoaderFileFormat - -from dlt.common.utils import uniq_id -from dlt.common.typing import TDataItems +from dlt.common.schema import Schema from dlt.common.schema.typing import TTableSchemaColumns from dlt.common.storages import ( NormalizeStorageConfiguration, NormalizeStorage, DataItemStorage, FileStorage, + PackageStorage, ) +from dlt.common.typing import TDataItems +from dlt.common.time import precise_time +from dlt.common.utils import uniq_id class ExtractorItemStorage(DataItemStorage): load_file_type: TLoaderFileFormat - def __init__(self, storage: FileStorage, extract_folder: str = "extract") -> None: - # data item storage with jsonl with pua encoding + def __init__(self, package_storage: PackageStorage) -> None: + """Data item storage using `storage` to manage load packages""" super().__init__(self.load_file_type) - self.extract_folder = extract_folder - self.storage = storage - - def _get_data_item_path_template(self, load_id: str, schema_name: str, table_name: str) -> str: - template = NormalizeStorage.build_extracted_file_stem(schema_name, table_name, "%s") - return self.storage.make_full_path(os.path.join(self._get_extract_path(load_id), template)) + self.package_storage = package_storage - def _get_extract_path(self, extract_id: str) -> str: - return os.path.join(self.extract_folder, extract_id) + def _get_data_item_path_template(self, load_id: str, _: str, table_name: str) -> str: + file_name = PackageStorage.build_job_file_name(table_name, "%s") + file_path = self.package_storage.get_job_file_path( + load_id, PackageStorage.NEW_JOBS_FOLDER, file_name + ) + return self.package_storage.storage.make_full_path(file_path) class JsonLExtractorStorage(ExtractorItemStorage): @@ -40,44 +42,62 @@ class ArrowExtractorStorage(ExtractorItemStorage): class ExtractorStorage(NormalizeStorage): - EXTRACT_FOLDER: ClassVar[str] = "extract" - """Wrapper around multiple extractor storages with different file formats""" def __init__(self, C: NormalizeStorageConfiguration) -> None: super().__init__(True, C) + # always create new packages in an unique folder for each instance so + # extracts are isolated ie. if they fail + self.new_packages_folder = uniq_id(8) + self.storage.create_folder(self.new_packages_folder, exists_ok=True) + self.new_packages = PackageStorage( + FileStorage(os.path.join(self.storage.storage_path, self.new_packages_folder)), "new" + ) self._item_storages: Dict[TLoaderFileFormat, ExtractorItemStorage] = { - "puae-jsonl": JsonLExtractorStorage(self.storage, extract_folder=self.EXTRACT_FOLDER), - "arrow": ArrowExtractorStorage(self.storage, extract_folder=self.EXTRACT_FOLDER), + "puae-jsonl": JsonLExtractorStorage(self.new_packages), + "arrow": ArrowExtractorStorage(self.new_packages), } - def _get_extract_path(self, extract_id: str) -> str: - return os.path.join(self.EXTRACT_FOLDER, extract_id) - - def create_extract_id(self) -> str: - extract_id = uniq_id() - self.storage.create_folder(self._get_extract_path(extract_id)) - return extract_id + def create_load_package(self, schema: Schema, reuse_exiting_package: bool = True) -> str: + """Creates a new load package for given `schema` or returns if such package already exists. + + You can prevent reuse of the existing package by setting `reuse_exiting_package` to False + """ + load_id: str = None + if reuse_exiting_package: + # look for existing package with the same schema name + # TODO: we may cache this mapping but fallback to files is required if pipeline restarts + load_ids = self.new_packages.list_packages() + for load_id in load_ids: + if self.new_packages.schema_name(load_id) == schema.name: + break + load_id = None + if not load_id: + load_id = str(precise_time()) + self.new_packages.create_package(load_id) + # always save schema + self.new_packages.save_schema(load_id, schema) + return load_id def get_storage(self, loader_file_format: TLoaderFileFormat) -> ExtractorItemStorage: return self._item_storages[loader_file_format] - def close_writers(self, extract_id: str) -> None: + def close_writers(self, load_id: str) -> None: for storage in self._item_storages.values(): - storage.close_writers(extract_id) - - def commit_extract_files(self, extract_id: str, with_delete: bool = True) -> None: - extract_path = self._get_extract_path(extract_id) - for file in self.storage.list_folder_files(extract_path, to_root=False): - from_file = os.path.join(extract_path, file) - to_file = os.path.join(NormalizeStorage.EXTRACTED_FOLDER, file) - if with_delete: - self.storage.atomic_rename(from_file, to_file) - else: - # create hardlink which will act as a copy - self.storage.link_hard(from_file, to_file) - if with_delete: - self.storage.delete_folder(extract_path, recursively=True) + storage.close_writers(load_id) + + def commit_new_load_package(self, load_id: str, schema: Schema) -> None: + self.new_packages.save_schema(load_id, schema) + self.storage.rename_tree( + os.path.join(self.new_packages_folder, self.new_packages.get_package_path(load_id)), + os.path.join( + NormalizeStorage.EXTRACTED_FOLDER, self.new_packages.get_package_path(load_id) + ), + ) + + def delete_empty_extract_folder(self) -> None: + """Deletes temporary extract folder if empty""" + self.storage.delete_folder(self.new_packages_folder, recursively=False) def write_data_item( self, diff --git a/dlt/load/load.py b/dlt/load/load.py index 485d5269c9..3f496a56fa 100644 --- a/dlt/load/load.py +++ b/dlt/load/load.py @@ -132,7 +132,7 @@ def w_spool_job( if is_staging_destination_job else job_client ) as client: - job_info = self.load_storage.parse_job_file_name(file_path) + job_info = ParsedLoadJobFileName.parse(file_path) if job_info.file_format not in self.load_storage.supported_file_formats: raise LoadClientUnsupportedFileFormats( job_info.file_format, @@ -159,7 +159,9 @@ def w_spool_job( with self.maybe_with_staging_dataset(client, use_staging_dataset): job = client.start_file_load( - table, self.load_storage.storage.make_full_path(file_path), load_id + table, + self.load_storage.normalized_packages.storage.make_full_path(file_path), + load_id, ) except (DestinationTerminalException, TerminalValueError): # if job irreversibly cannot be started, mark it as failed @@ -169,15 +171,11 @@ def w_spool_job( # return no job so file stays in new jobs (root) folder logger.exception(f"Temporary problem when adding job {file_path}") job = EmptyLoadJob.from_file_path(file_path, "retry", pretty_format_exception()) - self.load_storage.start_job(load_id, job.file_name()) + self.load_storage.normalized_packages.start_job(load_id, job.file_name()) return job def spool_new_jobs(self, load_id: str, schema: Schema) -> Tuple[int, List[LoadJob]]: - # TODO: validate file type, combine files, finalize etc., this is client specific, jsonl for single table - # can just be combined, insert_values must be finalized and then combined # use thread based pool as jobs processing is mostly I/O and we do not want to pickle jobs - # TODO: combine files by providing a list of files pertaining to same table into job, so job must be - # extended to accept a list load_files = self.load_storage.list_new_jobs(load_id)[: self.config.workers] file_count = len(load_files) if file_count == 0: @@ -197,7 +195,7 @@ def retrieve_jobs( jobs: List[LoadJob] = [] # list all files that were started but not yet completed - started_jobs = self.load_storage.list_started_jobs(load_id) + started_jobs = self.load_storage.normalized_packages.list_started_jobs(load_id) logger.info(f"Found {len(started_jobs)} that are already started and should be continued") if len(started_jobs) == 0: @@ -221,7 +219,7 @@ def retrieve_jobs( def get_new_jobs_info(self, load_id: str) -> List[ParsedLoadJobFileName]: return [ - LoadStorage.parse_job_file_name(job_file) + ParsedLoadJobFileName.parse(job_file) for job_file in self.load_storage.list_new_jobs(load_id) ] @@ -240,7 +238,9 @@ def get_completed_table_chain( table_chain: List[TTableSchema] = [] # make sure all the jobs for the table chain is completed for table in get_child_tables(schema.tables, top_merged_table["name"]): - table_jobs = self.load_storage.list_jobs_for_table(load_id, table["name"]) + table_jobs = self.load_storage.normalized_packages.list_jobs_for_table( + load_id, table["name"] + ) # all jobs must be completed in order for merge to be created if any( job.state not in ("failed_jobs", "completed_jobs") @@ -294,7 +294,9 @@ def complete_jobs(self, load_id: str, jobs: List[LoadJob], schema: Schema) -> Li elif state == "failed": # try to get exception message from job failed_message = job.exception() - self.load_storage.fail_job(load_id, job.file_name(), failed_message) + self.load_storage.normalized_packages.fail_job( + load_id, job.file_name(), failed_message + ) logger.error( f"Job for {job.job_id()} failed terminally in load {load_id} with message" f" {failed_message}" @@ -303,7 +305,7 @@ def complete_jobs(self, load_id: str, jobs: List[LoadJob], schema: Schema) -> Li # try to get exception message from job retry_message = job.exception() # move back to new folder to try again - self.load_storage.retry_job(load_id, job.file_name()) + self.load_storage.normalized_packages.retry_job(load_id, job.file_name()) logger.warning( f"Job for {job.job_id()} retried in load {load_id} with message {retry_message}" ) @@ -316,7 +318,7 @@ def complete_jobs(self, load_id: str, jobs: List[LoadJob], schema: Schema) -> Li "new_jobs" if followup_job.state() == "running" else "started_jobs" ) # save all created jobs - self.load_storage.add_new_job( + self.load_storage.normalized_packages.import_job( load_id, followup_job.new_file_path(), job_state=folder ) logger.info( @@ -328,7 +330,7 @@ def complete_jobs(self, load_id: str, jobs: List[LoadJob], schema: Schema) -> Li remaining_jobs.append(followup_job) # move to completed folder after followup jobs are created # in case of exception when creating followup job, the loader will retry operation and try to complete again - self.load_storage.complete_job(load_id, job.file_name()) + self.load_storage.normalized_packages.complete_job(load_id, job.file_name()) logger.info(f"Job for {job.job_id()} completed in load {load_id}") if state in ["failed", "completed"]: @@ -490,7 +492,7 @@ def load_single_package(self, load_id: str, schema: Schema) -> None: self.complete_package(load_id, schema, False) return # update counter we only care about the jobs that are scheduled to be loaded - package_info = self.load_storage.get_load_package_info(load_id) + package_info = self.load_storage.normalized_packages.get_load_package_info(load_id) total_jobs = reduce(lambda p, c: p + len(c), package_info.jobs.values(), 0) no_failed_jobs = len(package_info.jobs["failed_jobs"]) no_completed_jobs = len(package_info.jobs["completed_jobs"]) + no_failed_jobs @@ -505,7 +507,9 @@ def load_single_package(self, load_id: str, schema: Schema) -> None: remaining_jobs = self.complete_jobs(load_id, jobs, schema) if len(remaining_jobs) == 0: # get package status - package_info = self.load_storage.get_load_package_info(load_id) + package_info = self.load_storage.normalized_packages.get_load_package_info( + load_id + ) # possibly raise on failed jobs if self.config.raise_on_failed_jobs: if package_info.jobs["failed_jobs"]: @@ -550,7 +554,7 @@ def run(self, pool: Optional[Executor]) -> TRunMetrics: # load the schema from the package load_id = loads[0] logger.info(f"Loading schema from load package in {load_id}") - schema = self.load_storage.load_package_schema(load_id) + schema = self.load_storage.normalized_packages.load_schema(load_id) logger.info(f"Loaded schema name {schema.name} and version {schema.stored_version}") # get top load id and mark as being processed diff --git a/dlt/normalize/items_normalizers.py b/dlt/normalize/items_normalizers.py index 0a7be1535c..2a2d94cd45 100644 --- a/dlt/normalize/items_normalizers.py +++ b/dlt/normalize/items_normalizers.py @@ -6,7 +6,13 @@ from dlt.common.json import custom_pua_decode, may_have_pua from dlt.common.runtime import signals from dlt.common.schema.typing import TSchemaEvolutionMode, TTableSchemaColumns, TSchemaContractDict -from dlt.common.storages import NormalizeStorage, LoadStorage, FileStorage +from dlt.common.storages import ( + NormalizeStorage, + LoadStorage, + FileStorage, + PackageStorage, + ParsedLoadJobFileName, +) from dlt.common.typing import DictStrAny, TDataItem from dlt.common.schema import TSchemaUpdate, Schema from dlt.common.utils import TRowCount, merge_row_count, increase_row_count @@ -191,7 +197,9 @@ def __call__( ) -> Tuple[List[TSchemaUpdate], int, TRowCount]: schema_updates: List[TSchemaUpdate] = [] row_counts: TRowCount = {} - with self.normalize_storage.storage.open_file(extracted_items_file, "rb") as f: + with self.normalize_storage.extracted_packages.storage.open_file( + extracted_items_file, "rb" + ) as f: # enumerate jsonl file line by line items_count = 0 line: bytes @@ -266,7 +274,9 @@ def _write_with_dlt_columns( items_count = 0 as_py = self.load_storage.loader_file_format != "arrow" - with self.normalize_storage.storage.open_file(extracted_items_file, "rb") as f: + with self.normalize_storage.extracted_packages.storage.open_file( + extracted_items_file, "rb" + ) as f: for batch in pyarrow.pq_stream_with_new_columns( f, new_columns, row_groups_per_read=self.REWRITE_ROW_GROUPS ): @@ -324,17 +334,22 @@ def __call__( from dlt.common.libs.pyarrow import get_row_count - with self.normalize_storage.storage.open_file(extracted_items_file, "rb") as f: + with self.normalize_storage.extracted_packages.storage.open_file( + extracted_items_file, "rb" + ) as f: items_count = get_row_count(f) - target_folder = self.load_storage.storage.make_full_path( - os.path.join(self.load_id, LoadStorage.NEW_JOBS_FOLDER) + + parts = ParsedLoadJobFileName.parse(extracted_items_file) + new_file_name = PackageStorage.build_job_file_name( + parts.table_name, parts.file_id, loader_file_format=self.load_storage.loader_file_format ) - parts = NormalizeStorage.parse_normalize_file_name(extracted_items_file) - new_file_name = self.load_storage.build_job_file_name( - parts.table_name, parts.file_id, with_extension=True + target_file_path = self.load_storage.new_packages.storage.make_full_path( + self.load_storage.new_packages.get_job_file_path( + self.load_id, PackageStorage.NEW_JOBS_FOLDER, new_file_name + ) ) FileStorage.link_hard_with_fallback( - self.normalize_storage.storage.make_full_path(extracted_items_file), - os.path.join(target_folder, new_file_name), + self.normalize_storage.extracted_packages.storage.make_full_path(extracted_items_file), + target_file_path, ) return base_schema_update, items_count, {root_table_name: items_count} diff --git a/dlt/normalize/normalize.py b/dlt/normalize/normalize.py index fd7c4ed894..e6be475e04 100644 --- a/dlt/normalize/normalize.py +++ b/dlt/normalize/normalize.py @@ -2,7 +2,7 @@ from typing import Callable, List, Dict, Sequence, Tuple, Set, Optional from concurrent.futures import Future, Executor -from dlt.common import pendulum, json, logger, sleep +from dlt.common import logger, sleep from dlt.common.configuration import with_config, known_sections from dlt.common.configuration.accessors import config from dlt.common.configuration.container import Container @@ -12,13 +12,13 @@ from dlt.common.runtime.collector import Collector, NULL_COLLECTOR from dlt.common.schema.typing import TStoredSchema from dlt.common.schema.utils import merge_schema_updates -from dlt.common.storages.exceptions import SchemaNotFoundError from dlt.common.storages import ( NormalizeStorage, SchemaStorage, LoadStorage, LoadStorageConfiguration, NormalizeStorageConfiguration, + ParsedLoadJobFileName, ) from dlt.common.schema import TSchemaUpdate, Schema from dlt.common.schema.exceptions import CannotCoerceColumnException @@ -80,19 +80,6 @@ def create_storages(self) -> None: config=self.config._load_storage_config, ) - @staticmethod - def load_or_create_schema(schema_storage: SchemaStorage, schema_name: str) -> Schema: - try: - schema = schema_storage.load_schema(schema_name) - schema.update_normalizers() - logger.info( - f"Loaded schema with name {schema_name} with version {schema.stored_version}" - ) - except SchemaNotFoundError: - schema = Schema(schema_name) - logger.info(f"Created new schema with name {schema_name}") - return schema - @staticmethod def w_normalize_files( config: NormalizeConfiguration, @@ -162,9 +149,7 @@ def _get_items_normalizer( populated_root_tables: Set[str] = set() for extracted_items_file in extracted_items_files: line_no: int = 0 - parsed_file_name = NormalizeStorage.parse_normalize_file_name( - extracted_items_file - ) + parsed_file_name = ParsedLoadJobFileName.parse(extracted_items_file) # normalize table name in case the normalization changed # NOTE: this is the best we can do, until a full lineage information is in the schema root_table_name = schema.naming.normalize_table_identifier( @@ -318,50 +303,53 @@ def map_single(self, schema: Schema, load_id: str, files: Sequence[str]) -> TMap return result[0], result[3] def spool_files( - self, schema_name: str, load_id: str, map_f: TMapFuncType, files: Sequence[str] + self, load_id: str, schema: Schema, map_f: TMapFuncType, files: Sequence[str] ) -> None: - schema = Normalize.load_or_create_schema(self.schema_storage, schema_name) # process files in parallel or in single thread, depending on map_f schema_updates, row_counts = map_f(schema, load_id, files) # remove normalizer specific info for table in schema.tables.values(): table.pop("x-normalizer", None) # type: ignore[typeddict-item] logger.info( - f"Saving schema {schema_name} with version {schema.version}, writing manifest files" + f"Saving schema {schema.name} with version {schema.stored_version}:{schema.version}" ) # schema is updated, save it to schema volume self.schema_storage.save_schema(schema) - # save schema to temp load folder - self.load_storage.save_temp_schema(schema, load_id) + # save schema new package + self.load_storage.new_packages.save_schema(load_id, schema) # save schema updates even if empty - self.load_storage.save_temp_schema_updates(load_id, merge_schema_updates(schema_updates)) + self.load_storage.new_packages.save_schema_updates( + load_id, merge_schema_updates(schema_updates) + ) # files must be renamed and deleted together so do not attempt that when process is about to be terminated signals.raise_if_signalled() logger.info("Committing storage, do not kill this process") # rename temp folder to processing - self.load_storage.commit_temp_load_package(load_id) + self.load_storage.commit_new_load_package(load_id) # delete item files to complete commit - self.normalize_storage.delete_extracted_files(files) + self.normalize_storage.extracted_packages.delete_package(load_id) # log and update metrics - logger.info(f"Chunk {load_id} processed") + logger.info(f"Extracted package {load_id} processed") self._row_counts = row_counts - def spool_schema_files(self, load_id: str, schema_name: str, files: Sequence[str]) -> str: + def spool_schema_files(self, load_id: str, schema: Schema, files: Sequence[str]) -> str: # normalized files will go here before being atomically renamed - - self.load_storage.create_temp_load_package(load_id) - logger.info(f"Created temp load folder {load_id} on loading volume") + self.load_storage.new_packages.create_package(load_id) + logger.info(f"Created new load package {load_id} on loading volume") try: # process parallel - self.spool_files(schema_name, load_id, self.map_parallel, files) + self.spool_files( + load_id, schema.clone(update_normalizers=True), self.map_parallel, files + ) except CannotCoerceColumnException as exc: # schema conflicts resulting from parallel executing logger.warning( f"Parallel schema update conflict, switching to single thread ({str(exc)}" ) # start from scratch - self.load_storage.create_temp_load_package(load_id) - self.spool_files(schema_name, load_id, self.map_single, files) + self.load_storage.new_packages.delete_package(load_id) + self.load_storage.new_packages.create_package(load_id) + self.spool_files(load_id, schema.clone(update_normalizers=True), self.map_single, files) return load_id @@ -370,24 +358,31 @@ def run(self, pool: Optional[Executor]) -> TRunMetrics: self.pool = pool or NullExecutor() self._row_counts = {} logger.info("Running file normalizing") - # list files and group by schema name, list must be sorted for group by to actually work - files = self.normalize_storage.list_files_to_normalize_sorted() - logger.info(f"Found {len(files)} files") - if len(files) == 0: + # list all load packages in extracted folder + load_ids = self.normalize_storage.extracted_packages.list_packages() + logger.info(f"Found {len(load_ids)} load packages") + if len(load_ids) == 0: return TRunMetrics(True, 0) - # group files by schema - for schema_name, files_iter in self.normalize_storage.group_by_schema(files): - schema_files = list(files_iter) - load_id = str(pendulum.now().timestamp()) + for load_id in load_ids: + # read schema from package + schema = self.normalize_storage.extracted_packages.load_schema(load_id) + # read all files to normalize placed as new jobs + schema_files = self.normalize_storage.extracted_packages.list_new_jobs(load_id) logger.info( - f"Found {len(schema_files)} files in schema {schema_name} load_id {load_id}" + f"Found {len(schema_files)} files in schema {schema.name} load_id {load_id}" ) - with self.collector(f"Normalize {schema_name} in {load_id}"): + if len(schema_files) == 0: + # delete empty package + self.normalize_storage.extracted_packages.delete_package(load_id) + logger.dlt_version_info(f"Empty package {load_id} processed") + continue + with self.collector(f"Normalize {schema.name} in {load_id}"): self.collector.update("Files", 0, len(schema_files)) self.collector.update("Items", 0) - self.spool_schema_files(load_id, schema_name, schema_files) - # return info on still pending files (if extractor saved something in the meantime) - return TRunMetrics(False, len(self.normalize_storage.list_files_to_normalize_sorted())) + self.spool_schema_files(load_id, schema, schema_files) + + # return info on still pending packages (if extractor saved something in the meantime) + return TRunMetrics(False, len(self.normalize_storage.extracted_packages.list_packages())) def get_normalize_info(self) -> NormalizeInfo: return NormalizeInfo(row_counts=self._row_counts) diff --git a/dlt/pipeline/__init__.py b/dlt/pipeline/__init__.py index 1a9503c287..deb29a2cf8 100644 --- a/dlt/pipeline/__init__.py +++ b/dlt/pipeline/__init__.py @@ -13,7 +13,7 @@ from dlt.pipeline.configuration import PipelineConfiguration, ensure_correct_pipeline_kwargs from dlt.pipeline.pipeline import Pipeline from dlt.pipeline.progress import _from_name as collector_from_name, TCollectorArg, _NULL_COLLECTOR -from dlt.pipeline.deprecations import credentials_argument_deprecated +from dlt.pipeline.warnings import credentials_argument_deprecated @overload diff --git a/dlt/pipeline/helpers.py b/dlt/pipeline/helpers.py index b71dad3298..7bba5f84e7 100644 --- a/dlt/pipeline/helpers.py +++ b/dlt/pipeline/helpers.py @@ -154,13 +154,18 @@ def is_empty(self) -> bool: def _drop_destination_tables(self) -> None: table_names = [tbl["name"] for tbl in self.tables_to_drop] + for table_name in table_names: + assert table_name not in self.schema._schema_tables, ( + f"You are dropping table {table_name} in {self.schema.name} but it is still present" + " in the schema" + ) with self.pipeline._sql_job_client(self.schema) as client: - client.drop_tables(*table_names) + client.drop_tables(*table_names, replace_schema=True) # also delete staging but ignore if staging does not exist if isinstance(client, WithStagingDataset): with contextlib.suppress(DatabaseUndefinedRelation): with client.with_staging_dataset(): - client.drop_tables(*table_names) + client.drop_tables(*table_names, replace_schema=True) def _delete_pipeline_tables(self) -> None: for tbl in self.tables_to_drop: @@ -213,19 +218,20 @@ def __call__(self) -> None: if self.drop_tables: self._delete_pipeline_tables() self._drop_destination_tables() - if self.drop_state: - self._drop_state_keys() if self.drop_tables: self.pipeline.schemas.save_schema(self.schema) + if self.drop_state: + self._drop_state_keys() # Send updated state to destination self.pipeline.normalize() try: self.pipeline.load(raise_on_failed_jobs=True) except Exception: # Clear extracted state on failure so command can run again - self.pipeline._get_load_storage().wipe_normalized_packages() + self.pipeline.drop_pending_packages() with self.pipeline.managed_state() as state: state["_local"].pop("_last_extracted_at", None) + state["_local"].pop("_last_extracted_hash", None) raise diff --git a/dlt/pipeline/pipeline.py b/dlt/pipeline/pipeline.py index 836442f5bb..f78c77700a 100644 --- a/dlt/pipeline/pipeline.py +++ b/dlt/pipeline/pipeline.py @@ -16,7 +16,6 @@ cast, get_type_hints, ContextManager, - Mapping, ) from dlt import version @@ -49,8 +48,8 @@ TSchemaContract, ) from dlt.common.schema.utils import normalize_schema_name -from dlt.common.storages.load_storage import LoadJobInfo, LoadPackageInfo -from dlt.common.typing import TFun, TSecretValue, is_optional_type +from dlt.common.storages.exceptions import LoadPackageNotFound +from dlt.common.typing import DictStrStr, TFun, TSecretValue, is_optional_type from dlt.common.runners import pool_runner as runner from dlt.common.storages import ( LiveSchemaStorage, @@ -61,6 +60,9 @@ NormalizeStorageConfiguration, SchemaStorageConfiguration, LoadStorageConfiguration, + PackageStorage, + LoadJobInfo, + LoadPackageInfo, ) from dlt.common.destination import DestinationCapabilitiesContext, TDestination from dlt.common.destination.reference import ( @@ -88,6 +90,7 @@ from dlt.common.schema import Schema from dlt.common.utils import is_interactive from dlt.common.data_writers import TLoaderFileFormat +from dlt.common.warnings import deprecated, Dlt04DeprecationWarning from dlt.extract import DltResource, DltSource from dlt.extract.exceptions import SourceExhausted @@ -123,14 +126,14 @@ from dlt.pipeline.typing import TPipelineStep from dlt.pipeline.state_sync import ( STATE_ENGINE_VERSION, + bump_version_if_modified, load_state_from_destination, - merge_state_if_changed, migrate_state, state_resource, json_encode_state, json_decode_state, ) -from dlt.pipeline.deprecations import credentials_argument_deprecated +from dlt.pipeline.warnings import credentials_argument_deprecated def with_state_sync(may_extract_state: bool = False) -> Callable[[TFun], TFun]: @@ -360,7 +363,7 @@ def extract( """Extracts the `data` and prepare it for the normalization. Does not require destination or credentials to be configured. See `run` method for the arguments' description.""" # create extract storage to which all the sources will be extracted storage = ExtractorStorage(self._normalize_storage_config) - extract_ids: List[str] = [] + load_ids: DictStrStr = {} try: with self._maybe_destination_capabilities(): # extract all sources @@ -377,14 +380,25 @@ def extract( if source.exhausted: raise SourceExhausted(source.name) # TODO: merge infos for all the sources - extract_ids.append( - self._extract_source(storage, source, max_parallel_items, workers) + load_id, schema_name = self._extract_source( + storage, source, max_parallel_items, workers ) - # commit extract ids + load_ids[load_id] = schema_name + # extract state + if self.config.restore_from_destination: + # this will modify the state in the container so state manager will not extract the state + load_id, schema_name = self._bump_version_and_extract_state( + self._container[StateInjectableContext].state, True, storage + ) + # returns load_id only if state got extracted + if load_id: + load_ids[load_id] = schema_name + # commit load packages # TODO: if we fail here we should probably wipe out the whole extract folder - for extract_id in extract_ids: - storage.commit_extract_files(extract_id) - + for load_id, schema_name in load_ids.items(): + storage.commit_new_load_package(load_id, self.schemas[schema_name]) + # all load ids got processed, cleanup empty folder + storage.delete_empty_extract_folder() return ExtractInfo(describe_extract_data(data)) except Exception as exc: # TODO: provide metrics from extractor @@ -447,7 +461,7 @@ def load( raise_on_failed_jobs: bool = False, ) -> LoadInfo: """Loads the packages prepared by `normalize` method into the `dataset_name` at `destination`, using provided `credentials`""" - # set destination and default dataset if provided + # set destination and default dataset if provided (this is the reason we have state sync here) self._set_destinations(destination, None) self._set_dataset_name(dataset_name) @@ -577,7 +591,7 @@ def run( self._state_restored = True # normalize and load pending data - if self.list_extracted_resources(): + if self.list_extracted_load_packages(): self.normalize(loader_file_format=loader_file_format) if self.list_normalized_load_packages(): # if there were any pending loads, load them and **exit** @@ -627,8 +641,7 @@ def sync_destination( self._set_dataset_name(dataset_name) state = self._get_state() - local_state = state.pop("_local") - merged_state: TPipelineState = None + state_changed = False try: try: restored_schemas: Sequence[Schema] = None @@ -636,13 +649,11 @@ def sync_destination( # if remote state is newer or same # print(f'REMOTE STATE: {(remote_state or {}).get("_state_version")} >= {state["_state_version"]}') + # TODO: check if remote_state["_state_version"] is not in 10 recent version. then we know remote is newer. if remote_state and remote_state["_state_version"] >= state["_state_version"]: - # compare changes and updates local state - merged_state = merge_state_if_changed( - state, remote_state, increase_version=False - ) + state_changed = remote_state["_version_hash"] != state.get("_version_hash") # print(f"MERGED STATE: {bool(merged_state)}") - if merged_state: + if state_changed: # see if state didn't change the pipeline name if state["pipeline_name"] != remote_state["pipeline_name"]: raise CannotRestorePipelineException( @@ -653,7 +664,7 @@ def sync_destination( ) # if state was modified force get all schemas restored_schemas = self._get_schemas_from_destination( - merged_state["schema_names"], always_download=True + remote_state["schema_names"], always_download=True ) # TODO: we should probably wipe out pipeline here @@ -663,12 +674,15 @@ def sync_destination( state["schema_names"], always_download=False ) # commit all the changes locally - if merged_state: + if state_changed: + # use remote state as state + remote_state["_local"] = state["_local"] + state = remote_state # set the pipeline props from merged state - state["_local"] = local_state + self._state_to_props(state) # add that the state is already extracted + state["_local"]["_last_extracted_hash"] = state["_version_hash"] state["_local"]["_last_extracted_at"] = pendulum.now() - self._state_to_props(merged_state) # on merge schemas are replaced so we delete all old versions self._schema_storage.clear_storage() for schema in restored_schemas: @@ -698,10 +712,8 @@ def sync_destination( ) # write the state back - state = merged_state or state - if "_local" not in state: - state["_local"] = local_state self._props_to_state(state) + bump_version_if_modified(state) self._save_state(state) except Exception as ex: raise PipelineStepFailed(self, "run", ex, None) from ex @@ -741,7 +753,7 @@ def has_data(self) -> bool: return ( not self.first_run or bool(self.schema_names) - or len(self.list_extracted_resources()) > 0 + or len(self.list_extracted_load_packages()) > 0 or len(self.list_normalized_load_packages()) > 0 ) @@ -750,7 +762,7 @@ def has_pending_data(self) -> bool: """Tells if the pipeline contains any extracted files or pending load packages""" return ( len(self.list_normalized_load_packages()) > 0 - or len(self.list_extracted_resources()) > 0 + or len(self.list_extracted_load_packages()) > 0 ) @property @@ -773,21 +785,33 @@ def last_trace(self) -> PipelineTrace: return self._last_trace return load_trace(self.working_dir) + @deprecated( + "Please use list_extracted_load_packages instead. Flat extracted storage format got dropped" + " in dlt 0.4.0", + category=Dlt04DeprecationWarning, + ) def list_extracted_resources(self) -> Sequence[str]: """Returns a list of all the files with extracted resources that will be normalized.""" return self._get_normalize_storage().list_files_to_normalize_sorted() + def list_extracted_load_packages(self) -> Sequence[str]: + """Returns a list of all load packages ids that are or will be normalized.""" + return self._get_normalize_storage().extracted_packages.list_packages() + def list_normalized_load_packages(self) -> Sequence[str]: """Returns a list of all load packages ids that are or will be loaded.""" return self._get_load_storage().list_normalized_packages() def list_completed_load_packages(self) -> Sequence[str]: """Returns a list of all load package ids that are completely loaded""" - return self._get_load_storage().list_completed_packages() + return self._get_load_storage().list_loaded_packages() def get_load_package_info(self, load_id: str) -> LoadPackageInfo: - """Returns information on normalized/completed package with given load_id, all jobs and their statuses.""" - return self._get_load_storage().get_load_package_info(load_id) + """Returns information on extracted/normalized/completed package with given load_id, all jobs and their statuses.""" + try: + return self._get_load_storage().get_load_package_info(load_id) + except LoadPackageNotFound: + return self._get_normalize_storage().extracted_packages.get_load_package_info(load_id) def list_failed_jobs_in_package(self, load_id: str) -> Sequence[LoadJobInfo]: """List all failed jobs and associated error messages for a specified `load_id`""" @@ -797,15 +821,15 @@ def drop_pending_packages(self, with_partial_loads: bool = True) -> None: """Deletes all extracted and normalized packages, including those that are partially loaded by default""" # delete normalized packages load_storage = self._get_load_storage() - for load_id in load_storage.list_normalized_packages(): - package_info = load_storage.get_load_package_info(load_id) - if LoadStorage.is_package_partially_loaded(package_info) and not with_partial_loads: + for load_id in load_storage.normalized_packages.list_packages(): + package_info = load_storage.normalized_packages.get_load_package_info(load_id) + if PackageStorage.is_package_partially_loaded(package_info) and not with_partial_loads: continue - package_path = load_storage.get_normalized_package_path(load_id) - load_storage.storage.delete_folder(package_path, recursively=True) + load_storage.normalized_packages.delete_package(load_id) # delete extracted files normalize_storage = self._get_normalize_storage() - normalize_storage.delete_extracted_files(normalize_storage.list_files_to_normalize_sorted()) + for load_id in normalize_storage.extracted_packages.list_packages(): + normalize_storage.extracted_packages.delete_package(load_id) @with_schemas_sync def sync_schema(self, schema_name: str = None, credentials: Any = None) -> TSchemaTables: @@ -975,7 +999,7 @@ def _attach_pipeline(self) -> None: def _data_to_sources( self, data: Any, - schema: Schema, + schema: Schema = None, table_name: str = None, parent_table_name: str = None, write_disposition: TWriteDisposition = None, @@ -1055,7 +1079,7 @@ def append_data(data_item: Any) -> None: def _extract_source( self, storage: ExtractorStorage, source: DltSource, max_parallel_items: int, workers: int - ) -> str: + ) -> Tuple[str, str]: # discover the existing pipeline schema if source.schema.name in self.schemas: # use clone until extraction complete @@ -1067,9 +1091,7 @@ def _extract_source( source.schema = pipeline_schema # extract into pipeline schema - extract_id = extract_with_schema( - storage, source, self.collector, max_parallel_items, workers - ) + load_id = extract_with_schema(storage, source, self.collector, max_parallel_items, workers) # save import with fully discovered schema self._schema_storage.save_import_schema_if_not_exists(source.schema) @@ -1082,7 +1104,7 @@ def _extract_source( # this performs additional validations as schema contains the naming module self._set_default_schema_name(source.schema) - return extract_id + return load_id, source.schema.name def _get_destination_client_initial_config( self, destination: TDestination = None, credentials: Any = None, as_staging: bool = False @@ -1375,11 +1397,14 @@ def _get_state(self) -> TPipelineState: self.pipeline_name, state, state["_state_engine_version"], STATE_ENGINE_VERSION ) except FileNotFoundError: + # do not set the state hash, this will happen on first merge return { "_state_version": 0, "_state_engine_version": STATE_ENGINE_VERSION, "_local": {"first_run": True}, } + # state["_version_hash"] = generate_version_hash(state) + # return state def _optional_sql_job_client(self, schema_name: str) -> Optional[SqlJobClientBase]: try: @@ -1421,7 +1446,7 @@ def _restore_state_from_destination(self) -> Optional[TPipelineState]: else: state = None logger.info( - "Destination does not support metadata storage" + "Destination does not support state sync" f" {self.destination.name}:{dataset_name}" ) return state @@ -1477,29 +1502,10 @@ def managed_state(self, *, extract_state: bool = False) -> Iterator[TPipelineSta # raise original exception raise else: - self._props_to_state(state) - - backup_state = self._get_state() - # do not compare local states - local_state = state.pop("_local") - backup_state.pop("_local") - - # check if any state element was changed - merged_state = merge_state_if_changed(backup_state, state) - # extract state only when there's change in the state or state was not yet extracted AND we actually want to do it - if (merged_state or "_last_extracted_at" not in local_state) and extract_state: - # print(f'EXTRACT STATE merged: {bool(merged_state)} extracted timestamp in {"_last_extracted_at" not in local_state}') - merged_state = self._extract_state(merged_state or state) - local_state["_last_extracted_at"] = pendulum.now() - - # if state is modified and is not being extracted, mark it to be extracted next time - if not extract_state and merged_state: - local_state.pop("_last_extracted_at", None) - - # always save state locally as local_state is not compared - merged_state = merged_state or state - merged_state["_local"] = local_state - self._save_state(merged_state) + # this modifies state in place + self._bump_version_and_extract_state(state, extract_state) + # so we save modified state here + self._save_state(state) def _state_to_props(self, state: TPipelineState) -> None: """Write `state` to pipeline props.""" @@ -1512,8 +1518,8 @@ def _state_to_props(self, state: TPipelineState) -> None: if "destination" in state: self._set_destinations(self.destination, self.staging if "staging" in state else None) - def _props_to_state(self, state: TPipelineState) -> None: - """Write pipeline props to `state`""" + def _props_to_state(self, state: TPipelineState) -> TPipelineState: + """Write pipeline props to `state`, returns it for chaining""" for prop in Pipeline.STATE_PROPS: if not prop.startswith("_"): state[prop] = getattr(self, prop) # type: ignore @@ -1525,6 +1531,32 @@ def _props_to_state(self, state: TPipelineState) -> None: if self.staging: state["staging"] = self.staging.name state["schema_names"] = self._list_schemas_sorted() + return state + + def _bump_version_and_extract_state( + self, state: TPipelineState, extract_state: bool, storage: ExtractorStorage = None + ) -> Tuple[str, str]: + """Merges existing state into `state` and extracts state using `storage` if extract_state is True. + + Storage will be created on demand. In that case the extracted package will be immediately committed. + """ + _, hash_, _ = bump_version_if_modified(self._props_to_state(state)) + should_extract = hash_ != state["_local"].get("_last_extracted_hash") + load_id: str = None + schema_name: str = None + if should_extract and extract_state: + storage_ = storage or ExtractorStorage(self._normalize_storage_config) + load_id, schema_name = self._extract_source( + storage_, self._data_to_sources(state_resource(state))[0], 1, 1 + ) + state["_local"]["_last_extracted_at"] = pendulum.now() + state["_local"]["_last_extracted_hash"] = hash_ + # commit only if we created storage + if not storage: + storage_.commit_new_load_package(load_id, self.schemas[schema_name]) + storage_.delete_empty_extract_folder() + # if state is modified and is not being extracted, mark it to be extracted next time + return load_id, schema_name def _list_schemas_sorted(self) -> List[str]: """Lists schema names sorted to have deterministic state""" @@ -1533,15 +1565,6 @@ def _list_schemas_sorted(self) -> List[str]: def _save_state(self, state: TPipelineState) -> None: self._pipeline_storage.save(Pipeline.STATE_FILE, json_encode_state(state)) - def _extract_state(self, state: TPipelineState) -> TPipelineState: - # this will extract the state into current load package and update the schema with the _dlt_pipeline_state table - # note: the schema will be persisted because the schema saving decorator is over the state manager decorator for extract - state_source = DltSource(self.default_schema, self.pipeline_name, [state_resource(state)]) - storage = ExtractorStorage(self._normalize_storage_config) - extract_id = extract_with_schema(storage, state_source, _NULL_COLLECTOR, 1, 1) - storage.commit_extract_files(extract_id) - return state - def __getstate__(self) -> Any: # pickle only the SupportsPipeline protocol fields return {"pipeline_name": self.pipeline_name} diff --git a/dlt/pipeline/state_sync.py b/dlt/pipeline/state_sync.py index 29f1e9515c..32b9d43dfd 100644 --- a/dlt/pipeline/state_sync.py +++ b/dlt/pipeline/state_sync.py @@ -1,25 +1,25 @@ +import base64 import binascii -from typing import Any, Optional, cast -import binascii - +from copy import copy +import hashlib +from typing import Any, Optional, Tuple, cast import pendulum import dlt - from dlt.common import json -from dlt.common.pipeline import TPipelineState +from dlt.common.pipeline import TPipelineLocalState, TPipelineState from dlt.common.typing import DictStrAny from dlt.common.schema.typing import STATE_TABLE_NAME, TTableSchemaColumns -from dlt.common.destination.reference import JobClientBase, WithStateSync +from dlt.common.destination.reference import WithStateSync +from dlt.common.utils import compressed_b64decode, compressed_b64encode from dlt.extract import DltResource from dlt.pipeline.exceptions import PipelineStateEngineNoUpgradePathException -from dlt.common.utils import compressed_b64decode, compressed_b64encode # allows to upgrade state when restored with a new version of state logic/schema -STATE_ENGINE_VERSION = 2 +STATE_ENGINE_VERSION = 3 # state table columns STATE_TABLE_COLUMNS: TTableSchemaColumns = { @@ -28,6 +28,11 @@ "pipeline_name": {"name": "pipeline_name", "data_type": "text", "nullable": False}, "state": {"name": "state", "data_type": "text", "nullable": False}, "created_at": {"name": "created_at", "data_type": "timestamp", "nullable": False}, + "version_hash": { + "name": "version_hash", + "data_type": "text", + "nullable": True, + }, # set to nullable so we can migrate existing tables } @@ -52,20 +57,35 @@ def decompress_state(state_str: str) -> DictStrAny: return json.typed_loadb(state_bytes) # type: ignore[no-any-return] -def merge_state_if_changed( - old_state: TPipelineState, new_state: TPipelineState, increase_version: bool = True -) -> Optional[TPipelineState]: - # we may want to compare hashes like we do with schemas - if json.dumps(old_state, sort_keys=True) == json.dumps(new_state, sort_keys=True): - return None - # TODO: we should probably update smarter ie. recursively - old_state.update(new_state) - if increase_version: - old_state["_state_version"] += 1 - return old_state +def generate_version_hash(state: TPipelineState) -> str: + # generates hash out of stored schema content, excluding hash itself, version and local state + state_copy = copy(state) + state_copy.pop("_state_version", None) + state_copy.pop("_state_engine_version", None) + state_copy.pop("_version_hash", None) + state_copy.pop("_local", None) + content = json.typed_dumpb(state_copy, sort_keys=True) + h = hashlib.sha3_256(content) + return base64.b64encode(h.digest()).decode("ascii") + + +def bump_version_if_modified(state: TPipelineState) -> Tuple[int, str, str]: + """Bumps the `state` version and version hash if content modified, returns (new version, new hash, old hash) tuple""" + hash_ = generate_version_hash(state) + previous_hash = state.get("_version_hash") + if not previous_hash: + # if hash was not set, set it without bumping the version, that's initial schema + pass + elif hash_ != previous_hash: + state["_state_version"] += 1 + + state["_version_hash"] = hash_ + return state["_state_version"], hash_, previous_hash def state_resource(state: TPipelineState) -> DltResource: + state = copy(state) + state.pop("_local") state_str = compress_state(state) state_doc = { "version": state["_state_version"], @@ -73,6 +93,7 @@ def state_resource(state: TPipelineState) -> DltResource: "pipeline_name": state["pipeline_name"], "state": state_str, "created_at": pendulum.now(), + "version_hash": state["_version_hash"], } return dlt.resource( [state_doc], name=STATE_TABLE_NAME, write_disposition="append", columns=STATE_TABLE_COLUMNS @@ -96,6 +117,10 @@ def migrate_state( if from_engine == 1 and to_engine > 1: state["_local"] = {} from_engine = 2 + if from_engine == 2 and to_engine > 2: + # you may want to recompute hash + state["_version_hash"] = generate_version_hash(state) # type: ignore[arg-type] + from_engine = 3 # check state engine state["_state_engine_version"] = from_engine diff --git a/dlt/pipeline/deprecations.py b/dlt/pipeline/warnings.py similarity index 88% rename from dlt/pipeline/deprecations.py rename to dlt/pipeline/warnings.py index 4f714e3bea..87fcbc1f0c 100644 --- a/dlt/pipeline/deprecations.py +++ b/dlt/pipeline/warnings.py @@ -1,6 +1,7 @@ import typing as t import warnings +from dlt.common.warnings import Dlt04DeprecationWarning from dlt.common.destination import Destination, TDestinationReferenceArg @@ -16,6 +17,6 @@ def credentials_argument_deprecated( f"The `credentials argument` to {caller_name} is deprecated and will be removed in a future" " version. Pass the same credentials to the `destination` instance instead, e.g." f" {caller_name}(destination=dlt.destinations.{dest_name}(credentials=...))", - DeprecationWarning, + Dlt04DeprecationWarning, stacklevel=2, ) diff --git a/docs/website/docs/reference/performance_snippets/performance-snippets.py b/docs/website/docs/reference/performance_snippets/performance-snippets.py index 621cf21032..84bf36adb0 100644 --- a/docs/website/docs/reference/performance_snippets/performance-snippets.py +++ b/docs/website/docs/reference/performance_snippets/performance-snippets.py @@ -23,9 +23,11 @@ def read_table(limit): pipeline = dlt.pipeline("parallel_load", destination="duckdb", full_refresh=True) pipeline.extract(read_table(1000000)) + load_id = pipeline.list_extracted_load_packages()[0] + extracted_package = pipeline.get_load_package_info(load_id) # we should have 11 files (10 pieces for `table` and 1 for state) - extracted_files = pipeline.list_extracted_resources() - print(extracted_files) + extracted_jobs = extracted_package.jobs["new_jobs"] + print([str(job.job_file_info) for job in extracted_jobs]) # normalize and print counts print(pipeline.normalize(loader_file_format="jsonl")) # print jobs in load package (10 + 1 as above) @@ -34,7 +36,7 @@ def read_table(limit): print(pipeline.load()) # @@@DLT_SNIPPET_END parallel_config - assert len(extracted_files) == 11 + assert len(extracted_jobs) == 11 loaded_package = pipeline.get_load_package_info(load_id) assert len(loaded_package.jobs["completed_jobs"]) == 11 diff --git a/mypy.ini b/mypy.ini index 0d7ab84da9..8a02cf80bd 100644 --- a/mypy.ini +++ b/mypy.ini @@ -102,4 +102,6 @@ ignore_missing_imports=true [mypy-connectorx] ignore_missing_imports=true [mypy-s3fs.*] +ignore_missing_imports=true +[mypy-win_precise_time] ignore_missing_imports=true \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 0d05ead4b0..348fae3976 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,26 +1,18 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. - [[package]] name = "about-time" version = "4.2.1" description = "Easily measure timing and throughput of code blocks, with beautiful human friendly representations." +category = "dev" optional = false python-versions = ">=3.7, <4" -files = [ - {file = "about-time-4.2.1.tar.gz", hash = "sha256:6a538862d33ce67d997429d14998310e1dbfda6cb7d9bbfbf799c4709847fece"}, - 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"sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"}, {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"}, ] - -[package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] - -[extras] -athena = ["botocore", "pyarrow", "pyathena", "s3fs"] -az = ["adlfs"] -bigquery = ["gcsfs", "google-cloud-bigquery", "grpcio", "pyarrow"] -cli = ["cron-descriptor", "pipdeptree"] -dbt = ["dbt-athena-community", "dbt-bigquery", "dbt-core", "dbt-duckdb", "dbt-redshift", "dbt-snowflake"] -duckdb = ["duckdb"] -filesystem = ["botocore", "s3fs"] -gcp = ["gcsfs", "google-cloud-bigquery", "grpcio"] -gs = ["gcsfs"] -motherduck = ["duckdb", "pyarrow"] -mssql = ["pyodbc"] -parquet = ["pyarrow"] -postgres = ["psycopg2-binary", "psycopg2cffi"] -qdrant = ["qdrant-client"] -redshift = ["psycopg2-binary", "psycopg2cffi"] -s3 = ["botocore", "s3fs"] -snowflake = ["snowflake-connector-python"] -weaviate = ["weaviate-client"] - -[metadata] -lock-version = "2.0" -python-versions = ">=3.8.1,<3.13" -content-hash = "0bac5ade4c724f804899880ac258e6bb9212bb310de4c1664ae2a46838b0e837" diff --git a/pyproject.toml b/pyproject.toml index 5bc0811b69..e503edeea0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -47,9 +47,9 @@ giturlparse = ">=0.10.0" orjson = {version = ">=3.6.7", markers="platform_python_implementation != 'PyPy'"} tenacity = ">=8.0.2" jsonpath-ng = ">=1.5.3" -deprecated = ">=1.2.9" fsspec = ">=2022.4.0" packaging = ">=21.1" +win-precise-time = {version = ">=1.4.2", markers="os_name == 'nt'"} psycopg2-binary = {version = ">=2.9.1", optional = true} # use this dependency as the current version of psycopg2cffi does not have sql module diff --git a/tests/common/storages/test_load_package.py b/tests/common/storages/test_load_package.py new file mode 100644 index 0000000000..6afbf0910f --- /dev/null +++ b/tests/common/storages/test_load_package.py @@ -0,0 +1,121 @@ +import os +import pytest +from pathlib import Path + +from dlt.common import sleep +from dlt.common.schema import Schema +from dlt.common.storages import PackageStorage, LoadStorage, ParsedLoadJobFileName +from dlt.common.utils import uniq_id + +from tests.common.storages.utils import start_loading_file, assert_package_info, load_storage +from tests.utils import autouse_test_storage + + +def test_is_partially_loaded(load_storage: LoadStorage) -> None: + load_id, file_name = start_loading_file( + load_storage, [{"content": "a"}, {"content": "b"}], start_job=False + ) + info = load_storage.get_load_package_info(load_id) + # all jobs are new + assert PackageStorage.is_package_partially_loaded(info) is False + # start job + load_storage.normalized_packages.start_job(load_id, file_name) + info = load_storage.get_load_package_info(load_id) + assert PackageStorage.is_package_partially_loaded(info) is True + # complete job + load_storage.normalized_packages.complete_job(load_id, file_name) + info = load_storage.get_load_package_info(load_id) + assert PackageStorage.is_package_partially_loaded(info) is True + # must complete package + load_storage.complete_load_package(load_id, False) + info = load_storage.get_load_package_info(load_id) + assert PackageStorage.is_package_partially_loaded(info) is False + + # abort package + load_id, file_name = start_loading_file(load_storage, [{"content": "a"}, {"content": "b"}]) + load_storage.complete_load_package(load_id, True) + info = load_storage.get_load_package_info(load_id) + assert PackageStorage.is_package_partially_loaded(info) is True + + +def test_save_load_schema(load_storage: LoadStorage) -> None: + # mock schema version to some random number so we know we load what we save + schema = Schema("event") + schema._stored_version = 762171 + + load_storage.new_packages.create_package("copy") + saved_file_name = load_storage.new_packages.save_schema("copy", schema) + assert saved_file_name.endswith( + os.path.join( + load_storage.new_packages.storage.storage_path, "copy", PackageStorage.SCHEMA_FILE_NAME + ) + ) + assert load_storage.new_packages.storage.has_file( + os.path.join("copy", PackageStorage.SCHEMA_FILE_NAME) + ) + schema_copy = load_storage.new_packages.load_schema("copy") + assert schema.stored_version == schema_copy.stored_version + + +def test_job_elapsed_time_seconds(load_storage: LoadStorage) -> None: + load_id, fn = start_loading_file(load_storage, "test file") # type: ignore[arg-type] + fp = load_storage.normalized_packages.storage.make_full_path( + load_storage.normalized_packages.get_job_file_path(load_id, "started_jobs", fn) + ) + elapsed = PackageStorage._job_elapsed_time_seconds(fp) + sleep(0.3) + # do not touch file + elapsed_2 = PackageStorage._job_elapsed_time_seconds(fp) + assert elapsed_2 - elapsed >= 0.3 + # rename the file + fp = load_storage.normalized_packages.retry_job(load_id, fn) + # retry_job increases retry number in file name so the line below does not work + # fp = storage.storage._make_path(storage._get_job_file_path(load_id, "new_jobs", fn)) + elapsed_2 = PackageStorage._job_elapsed_time_seconds(fp) + # it should keep its mod original date after rename + assert elapsed_2 - elapsed >= 0.3 + + +def test_retry_job(load_storage: LoadStorage) -> None: + load_id, fn = start_loading_file(load_storage, "test file") # type: ignore[arg-type] + job_fn_t = ParsedLoadJobFileName.parse(fn) + assert job_fn_t.table_name == "mock_table" + assert job_fn_t.retry_count == 0 + # now retry + new_fp = load_storage.normalized_packages.retry_job(load_id, fn) + assert_package_info(load_storage, load_id, "normalized", "new_jobs") + assert ParsedLoadJobFileName.parse(new_fp).retry_count == 1 + # try again + fn = Path(new_fp).name + load_storage.normalized_packages.start_job(load_id, fn) + new_fp = load_storage.normalized_packages.retry_job(load_id, fn) + assert ParsedLoadJobFileName.parse(new_fp).retry_count == 2 + + +def test_build_parse_job_path(load_storage: LoadStorage) -> None: + file_id = uniq_id(5) + f_n_t = ParsedLoadJobFileName("test_table", file_id, 0, "jsonl") + job_f_n = PackageStorage.build_job_file_name( + f_n_t.table_name, file_id, 0, loader_file_format=load_storage.loader_file_format + ) + # test the exact representation but we should probably not test for that + assert job_f_n == f"test_table.{file_id}.0.jsonl" + assert ParsedLoadJobFileName.parse(job_f_n) == f_n_t + # also parses full paths correctly + assert ParsedLoadJobFileName.parse("load_id/" + job_f_n) == f_n_t + + # parts cannot contain dots + with pytest.raises(ValueError): + PackageStorage.build_job_file_name( + "test.table", file_id, 0, loader_file_format=load_storage.loader_file_format + ) + PackageStorage.build_job_file_name( + "test_table", "f.id", 0, loader_file_format=load_storage.loader_file_format + ) + + # parsing requires 4 parts and retry count + with pytest.raises(ValueError): + ParsedLoadJobFileName.parse(job_f_n + ".more") + + with pytest.raises(ValueError): + ParsedLoadJobFileName.parse("tab.id.wrong_retry.jsonl") diff --git a/tests/common/storages/test_load_storage.py b/tests/common/storages/test_load_storage.py new file mode 100644 index 0000000000..f81969cabe --- /dev/null +++ b/tests/common/storages/test_load_storage.py @@ -0,0 +1,177 @@ +import os +import pytest + +from dlt.common import json, pendulum +from dlt.common.schema import TSchemaTables +from dlt.common.storages import PackageStorage, LoadStorage +from dlt.common.storages.exceptions import LoadPackageNotFound, NoMigrationPathException + +from tests.common.storages.utils import start_loading_file, assert_package_info, load_storage +from tests.utils import write_version, autouse_test_storage + + +def test_complete_successful_package(load_storage: LoadStorage) -> None: + # should delete package in full + load_storage.config.delete_completed_jobs = True + load_id, file_name = start_loading_file(load_storage, [{"content": "a"}, {"content": "b"}]) + assert load_storage.storage.has_folder(load_storage.get_normalized_package_path(load_id)) + load_storage.normalized_packages.complete_job(load_id, file_name) + assert_package_info(load_storage, load_id, "normalized", "completed_jobs") + load_storage.complete_load_package(load_id, False) + # deleted from loading + assert not load_storage.storage.has_folder(load_storage.get_normalized_package_path(load_id)) + # has package + assert load_storage.storage.has_folder(load_storage.get_loaded_package_path(load_id)) + assert load_storage.storage.has_file( + os.path.join( + load_storage.get_loaded_package_path(load_id), + PackageStorage.PACKAGE_COMPLETED_FILE_NAME, + ) + ) + # but completed packages are deleted + assert not load_storage.loaded_packages.storage.has_folder( + load_storage.loaded_packages.get_job_folder_path(load_id, "completed_jobs") + ) + assert_package_info(load_storage, load_id, "loaded", "completed_jobs", jobs_count=0) + # delete completed package + load_storage.delete_loaded_package(load_id) + assert not load_storage.storage.has_folder(load_storage.get_loaded_package_path(load_id)) + # do not delete completed jobs + load_storage.config.delete_completed_jobs = False + load_id, file_name = start_loading_file(load_storage, [{"content": "a"}, {"content": "b"}]) + load_storage.normalized_packages.complete_job(load_id, file_name) + load_storage.complete_load_package(load_id, False) + # deleted from loading + assert not load_storage.storage.has_folder(load_storage.get_normalized_package_path(load_id)) + # has load preserved + assert load_storage.storage.has_folder(load_storage.get_loaded_package_path(load_id)) + assert load_storage.storage.has_file( + os.path.join( + load_storage.get_loaded_package_path(load_id), + PackageStorage.PACKAGE_COMPLETED_FILE_NAME, + ) + ) + # has completed loads + assert load_storage.loaded_packages.storage.has_folder( + load_storage.loaded_packages.get_job_folder_path(load_id, "completed_jobs") + ) + load_storage.delete_loaded_package(load_id) + assert not load_storage.storage.has_folder(load_storage.get_loaded_package_path(load_id)) + + +def test_wipe_normalized_packages(load_storage: LoadStorage) -> None: + load_id, file_name = start_loading_file(load_storage, [{"content": "a"}, {"content": "b"}]) + load_storage.wipe_normalized_packages() + assert not load_storage.storage.has_folder(load_storage.NORMALIZED_FOLDER) + + +def test_complete_package_failed_jobs(load_storage: LoadStorage) -> None: + # loads with failed jobs are always persisted + load_storage.config.delete_completed_jobs = True + load_id, file_name = start_loading_file(load_storage, [{"content": "a"}, {"content": "b"}]) + assert load_storage.storage.has_folder(load_storage.get_normalized_package_path(load_id)) + load_storage.normalized_packages.fail_job(load_id, file_name, "EXCEPTION") + assert_package_info(load_storage, load_id, "normalized", "failed_jobs") + load_storage.complete_load_package(load_id, False) + # deleted from loading + assert not load_storage.storage.has_folder(load_storage.get_normalized_package_path(load_id)) + # present in completed loads folder + assert load_storage.storage.has_folder(load_storage.get_loaded_package_path(load_id)) + # has completed loads + assert load_storage.loaded_packages.storage.has_folder( + load_storage.loaded_packages.get_job_folder_path(load_id, "completed_jobs") + ) + assert_package_info(load_storage, load_id, "loaded", "failed_jobs") + + # get failed jobs info + failed_files = sorted(load_storage.loaded_packages.list_failed_jobs(load_id)) + # job + message + assert len(failed_files) == 2 + assert load_storage.loaded_packages.storage.has_file(failed_files[0]) + failed_info = load_storage.list_failed_jobs_in_loaded_package(load_id) + assert failed_info[0].file_path == load_storage.loaded_packages.storage.make_full_path( + failed_files[0] + ) + assert failed_info[0].failed_message == "EXCEPTION" + assert failed_info[0].job_file_info.table_name == "mock_table" + # a few stats + assert failed_info[0].file_size == 32 + assert (pendulum.now() - failed_info[0].created_at).seconds < 2 + assert failed_info[0].elapsed < 2 + + package_info = load_storage.get_load_package_info(load_id) + assert package_info.state == "loaded" + assert package_info.schema_update == {} + assert package_info.jobs["failed_jobs"] == failed_info + + +def test_abort_package(load_storage: LoadStorage) -> None: + # loads with failed jobs are always persisted + load_storage.config.delete_completed_jobs = True + load_id, file_name = start_loading_file(load_storage, [{"content": "a"}, {"content": "b"}]) + assert load_storage.storage.has_folder(load_storage.get_normalized_package_path(load_id)) + load_storage.normalized_packages.fail_job(load_id, file_name, "EXCEPTION") + assert_package_info(load_storage, load_id, "normalized", "failed_jobs") + load_storage.complete_load_package(load_id, True) + assert load_storage.loaded_packages.storage.has_folder( + load_storage.loaded_packages.get_job_folder_path(load_id, "completed_jobs") + ) + assert_package_info(load_storage, load_id, "aborted", "failed_jobs") + + +def test_process_schema_update(load_storage: LoadStorage) -> None: + with pytest.raises(FileNotFoundError): + load_storage.begin_schema_update("load_id") + load_id, fn = start_loading_file(load_storage, "test file") # type: ignore[arg-type] + assert load_storage.begin_schema_update(load_id) == {} + assert load_storage.begin_schema_update(load_id) == {} + # store the applied schema update + applied_update: TSchemaTables = {"table": {"name": "table", "columns": {}}} + load_storage.commit_schema_update(load_id, applied_update) + with pytest.raises(FileNotFoundError): + load_storage.commit_schema_update(load_id, applied_update) + assert load_storage.begin_schema_update(load_id) is None + # processed file exists + applied_update_path = os.path.join( + load_storage.get_normalized_package_path(load_id), + PackageStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME, + ) + assert load_storage.storage.has_file(applied_update_path) is True + assert json.loads(load_storage.storage.load(applied_update_path)) == applied_update + # verify info package + package_info = assert_package_info(load_storage, load_id, "normalized", "started_jobs") + # applied update is present + assert package_info.schema_update == applied_update + # should be in dict + package_dict = package_info.asdict() + assert len(package_dict["tables"]) == 1 + # commit package + load_storage.complete_load_package(load_id, False) + package_info = assert_package_info(load_storage, load_id, "loaded", "started_jobs") + # applied update is present + assert package_info.schema_update == applied_update + + +def test_get_unknown_package_info(load_storage: LoadStorage) -> None: + with pytest.raises(LoadPackageNotFound): + load_storage.get_load_package_info("UNKNOWN LOAD ID") + + +def test_full_migration_path() -> None: + # create directory structure + s = LoadStorage(True, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) + # overwrite known initial version + write_version(s.storage, "1.0.0") + # must be able to migrate to current version + s = LoadStorage(False, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) + assert s.version == LoadStorage.STORAGE_VERSION + + +def test_unknown_migration_path() -> None: + # create directory structure + s = LoadStorage(True, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) + # overwrite known initial version + write_version(s.storage, "10.0.0") + # must be able to migrate to current version + with pytest.raises(NoMigrationPathException): + LoadStorage(False, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) diff --git a/tests/common/storages/test_loader_storage.py b/tests/common/storages/test_loader_storage.py deleted file mode 100644 index ad9e1bcac2..0000000000 --- a/tests/common/storages/test_loader_storage.py +++ /dev/null @@ -1,331 +0,0 @@ -import os -import pytest -from pathlib import Path -from typing import Sequence, Tuple - -from dlt.common import sleep, json, pendulum -from dlt.common.schema import Schema, TSchemaTables -from dlt.common.storages.load_storage import ( - LoadPackageInfo, - LoadStorage, - ParsedLoadJobFileName, - TJobState, -) -from dlt.common.configuration import resolve_configuration -from dlt.common.storages import LoadStorageConfiguration -from dlt.common.storages.exceptions import LoadPackageNotFound, NoMigrationPathException -from dlt.common.typing import StrAny -from dlt.common.utils import uniq_id - -from tests.utils import TEST_STORAGE_ROOT, write_version, autouse_test_storage - - -@pytest.fixture -def storage() -> LoadStorage: - C = resolve_configuration(LoadStorageConfiguration()) - s = LoadStorage(True, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS, C) - return s - - -def test_complete_successful_package(storage: LoadStorage) -> None: - # should delete package in full - storage.config.delete_completed_jobs = True - load_id, file_name = start_loading_file(storage, [{"content": "a"}, {"content": "b"}]) - assert storage.storage.has_folder(storage.get_normalized_package_path(load_id)) - storage.complete_job(load_id, file_name) - assert_package_info(storage, load_id, "normalized", "completed_jobs") - storage.complete_load_package(load_id, False) - # deleted from loading - assert not storage.storage.has_folder(storage.get_normalized_package_path(load_id)) - # has package - assert storage.storage.has_folder(storage.get_completed_package_path(load_id)) - assert storage.storage.has_file( - os.path.join( - storage.get_completed_package_path(load_id), LoadStorage.PACKAGE_COMPLETED_FILE_NAME - ) - ) - # but completed packages are deleted - assert not storage.storage.has_folder( - storage._get_job_folder_completed_path(load_id, "completed_jobs") - ) - assert_package_info(storage, load_id, "loaded", "completed_jobs", jobs_count=0) - # delete completed package - storage.delete_completed_package(load_id) - assert not storage.storage.has_folder(storage.get_completed_package_path(load_id)) - # do not delete completed jobs - storage.config.delete_completed_jobs = False - load_id, file_name = start_loading_file(storage, [{"content": "a"}, {"content": "b"}]) - storage.complete_job(load_id, file_name) - storage.complete_load_package(load_id, False) - # deleted from loading - assert not storage.storage.has_folder(storage.get_normalized_package_path(load_id)) - # has load preserved - assert storage.storage.has_folder(storage.get_completed_package_path(load_id)) - assert storage.storage.has_file( - os.path.join( - storage.get_completed_package_path(load_id), LoadStorage.PACKAGE_COMPLETED_FILE_NAME - ) - ) - # has completed loads - assert storage.storage.has_folder( - storage._get_job_folder_completed_path(load_id, "completed_jobs") - ) - storage.delete_completed_package(load_id) - assert not storage.storage.has_folder(storage.get_completed_package_path(load_id)) - - -def test_wipe_normalized_packages(storage: LoadStorage) -> None: - load_id, file_name = start_loading_file(storage, [{"content": "a"}, {"content": "b"}]) - storage.wipe_normalized_packages() - assert not storage.storage.has_folder(storage.NORMALIZED_FOLDER) - - -def test_is_partially_loaded(storage: LoadStorage) -> None: - load_id, file_name = start_loading_file( - storage, [{"content": "a"}, {"content": "b"}], start_job=False - ) - info = storage.get_load_package_info(load_id) - # all jobs are new - assert LoadStorage.is_package_partially_loaded(info) is False - # start job - storage.start_job(load_id, file_name) - info = storage.get_load_package_info(load_id) - assert LoadStorage.is_package_partially_loaded(info) is True - # complete job - storage.complete_job(load_id, file_name) - info = storage.get_load_package_info(load_id) - assert LoadStorage.is_package_partially_loaded(info) is True - # must complete package - storage.complete_load_package(load_id, False) - info = storage.get_load_package_info(load_id) - assert LoadStorage.is_package_partially_loaded(info) is False - - # abort package - load_id, file_name = start_loading_file(storage, [{"content": "a"}, {"content": "b"}]) - storage.complete_load_package(load_id, True) - info = storage.get_load_package_info(load_id) - assert LoadStorage.is_package_partially_loaded(info) is True - - -def test_complete_package_failed_jobs(storage: LoadStorage) -> None: - # loads with failed jobs are always persisted - storage.config.delete_completed_jobs = True - load_id, file_name = start_loading_file(storage, [{"content": "a"}, {"content": "b"}]) - assert storage.storage.has_folder(storage.get_normalized_package_path(load_id)) - storage.fail_job(load_id, file_name, "EXCEPTION") - assert_package_info(storage, load_id, "normalized", "failed_jobs") - storage.complete_load_package(load_id, False) - # deleted from loading - assert not storage.storage.has_folder(storage.get_normalized_package_path(load_id)) - # present in completed loads folder - assert storage.storage.has_folder(storage.get_completed_package_path(load_id)) - # has completed loads - assert storage.storage.has_folder( - storage._get_job_folder_completed_path(load_id, "completed_jobs") - ) - assert_package_info(storage, load_id, "loaded", "failed_jobs") - - # get failed jobs info - failed_files = sorted(storage.list_completed_failed_jobs(load_id)) - # job + message - assert len(failed_files) == 2 - assert storage.storage.has_file(failed_files[0]) - failed_info = storage.list_failed_jobs_in_completed_package(load_id) - assert failed_info[0].file_path == storage.storage.make_full_path(failed_files[0]) - assert failed_info[0].failed_message == "EXCEPTION" - assert failed_info[0].job_file_info.table_name == "mock_table" - # a few stats - assert failed_info[0].file_size == 32 - assert (pendulum.now() - failed_info[0].created_at).seconds < 2 - assert failed_info[0].elapsed < 2 - - package_info = storage.get_load_package_info(load_id) - assert package_info.state == "loaded" - assert package_info.schema_update == {} - assert package_info.jobs["failed_jobs"] == failed_info - - -def test_abort_package(storage: LoadStorage) -> None: - # loads with failed jobs are always persisted - storage.config.delete_completed_jobs = True - load_id, file_name = start_loading_file(storage, [{"content": "a"}, {"content": "b"}]) - assert storage.storage.has_folder(storage.get_normalized_package_path(load_id)) - storage.fail_job(load_id, file_name, "EXCEPTION") - assert_package_info(storage, load_id, "normalized", "failed_jobs") - storage.complete_load_package(load_id, True) - assert storage.storage.has_folder( - storage._get_job_folder_completed_path(load_id, "completed_jobs") - ) - assert_package_info(storage, load_id, "aborted", "failed_jobs") - - -def test_save_load_schema(storage: LoadStorage) -> None: - # mock schema version to some random number so we know we load what we save - schema = Schema("event") - schema._stored_version = 762171 - - storage.create_temp_load_package("copy") - saved_file_name = storage.save_temp_schema(schema, "copy") - assert saved_file_name.endswith( - os.path.join(storage.storage.storage_path, "copy", LoadStorage.SCHEMA_FILE_NAME) - ) - assert storage.storage.has_file(os.path.join("copy", LoadStorage.SCHEMA_FILE_NAME)) - schema_copy = storage.load_temp_schema("copy") - assert schema.stored_version == schema_copy.stored_version - - -def test_job_elapsed_time_seconds(storage: LoadStorage) -> None: - load_id, fn = start_loading_file(storage, "test file") # type: ignore[arg-type] - fp = storage.storage.make_full_path(storage._get_job_file_path(load_id, "started_jobs", fn)) - elapsed = storage.job_elapsed_time_seconds(fp) - sleep(0.3) - # do not touch file - elapsed_2 = storage.job_elapsed_time_seconds(fp) - assert elapsed_2 - elapsed >= 0.3 - # rename the file - fp = storage.retry_job(load_id, fn) - # retry_job increases retry number in file name so the line below does not work - # fp = storage.storage._make_path(storage._get_job_file_path(load_id, "new_jobs", fn)) - elapsed_2 = storage.job_elapsed_time_seconds(fp) - # it should keep its mod original date after rename - assert elapsed_2 - elapsed >= 0.3 - - -def test_retry_job(storage: LoadStorage) -> None: - load_id, fn = start_loading_file(storage, "test file") # type: ignore[arg-type] - job_fn_t = LoadStorage.parse_job_file_name(fn) - assert job_fn_t.table_name == "mock_table" - assert job_fn_t.retry_count == 0 - # now retry - new_fp = storage.retry_job(load_id, fn) - assert_package_info(storage, load_id, "normalized", "new_jobs") - assert LoadStorage.parse_job_file_name(new_fp).retry_count == 1 - # try again - fn = Path(new_fp).name - storage.start_job(load_id, fn) - new_fp = storage.retry_job(load_id, fn) - assert LoadStorage.parse_job_file_name(new_fp).retry_count == 2 - - -def test_build_parse_job_path(storage: LoadStorage) -> None: - file_id = uniq_id(5) - f_n_t = ParsedLoadJobFileName("test_table", file_id, 0, "jsonl") - job_f_n = storage.build_job_file_name(f_n_t.table_name, file_id, 0) - # test the exact representation but we should probably not test for that - assert job_f_n == f"test_table.{file_id}.0.jsonl" - assert LoadStorage.parse_job_file_name(job_f_n) == f_n_t - # also parses full paths correctly - assert LoadStorage.parse_job_file_name("load_id/" + job_f_n) == f_n_t - - # parts cannot contain dots - with pytest.raises(ValueError): - storage.build_job_file_name("test.table", file_id, 0) - storage.build_job_file_name("test_table", "f.id", 0) - - # parsing requires 4 parts and retry count - with pytest.raises(ValueError): - LoadStorage.parse_job_file_name(job_f_n + ".more") - LoadStorage.parse_job_file_name("tab.id.wrong_retry.jsonl") - # must know the file format - LoadStorage.parse_job_file_name("tab.id.300.avr") - - -def test_process_schema_update(storage: LoadStorage) -> None: - with pytest.raises(FileNotFoundError): - storage.begin_schema_update("load_id") - load_id, fn = start_loading_file(storage, "test file") # type: ignore[arg-type] - assert storage.begin_schema_update(load_id) == {} - assert storage.begin_schema_update(load_id) == {} - # store the applied schema update - applied_update: TSchemaTables = {"table": {"name": "table", "columns": {}}} - storage.commit_schema_update(load_id, applied_update) - with pytest.raises(FileNotFoundError): - storage.commit_schema_update(load_id, applied_update) - assert storage.begin_schema_update(load_id) is None - # processed file exists - applied_update_path = os.path.join( - storage.get_normalized_package_path(load_id), LoadStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME - ) - assert storage.storage.has_file(applied_update_path) is True - assert json.loads(storage.storage.load(applied_update_path)) == applied_update - # verify info package - package_info = assert_package_info(storage, load_id, "normalized", "started_jobs") - # applied update is present - assert package_info.schema_update == applied_update - # should be in dict - package_dict = package_info.asdict() - assert len(package_dict["tables"]) == 1 - # commit package - storage.complete_load_package(load_id, False) - package_info = assert_package_info(storage, load_id, "loaded", "started_jobs") - # applied update is present - assert package_info.schema_update == applied_update - - -def test_get_unknown_package_info(storage: LoadStorage) -> None: - with pytest.raises(LoadPackageNotFound): - storage.get_load_package_info("UNKNOWN LOAD ID") - - -def test_full_migration_path() -> None: - # create directory structure - s = LoadStorage(True, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) - # overwrite known initial version - write_version(s.storage, "1.0.0") - # must be able to migrate to current version - s = LoadStorage(False, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) - assert s.version == LoadStorage.STORAGE_VERSION - - -def test_unknown_migration_path() -> None: - # create directory structure - s = LoadStorage(True, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) - # overwrite known initial version - write_version(s.storage, "10.0.0") - # must be able to migrate to current version - with pytest.raises(NoMigrationPathException): - LoadStorage(False, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS) - - -def start_loading_file( - s: LoadStorage, content: Sequence[StrAny], start_job: bool = True -) -> Tuple[str, str]: - load_id = uniq_id() - s.create_temp_load_package(load_id) - # write test file - file_name = s.write_temp_job_file(load_id, "mock_table", None, uniq_id(), content) - # write schema and schema update - s.save_temp_schema(Schema("mock"), load_id) - s.save_temp_schema_updates(load_id, {}) - s.commit_temp_load_package(load_id) - assert_package_info(s, load_id, "normalized", "new_jobs") - if start_job: - s.start_job(load_id, file_name) - assert_package_info(s, load_id, "normalized", "started_jobs") - return load_id, file_name - - -def assert_package_info( - storage: LoadStorage, - load_id: str, - package_state: str, - job_state: TJobState, - jobs_count: int = 1, -) -> LoadPackageInfo: - package_info = storage.get_load_package_info(load_id) - # make sure it is serializable - json.dumps(package_info) - # generate str - str(package_info) - package_info.asstr() - package_info.asstr(verbosity=1) - assert package_info.state == package_state - assert package_info.schema_name == "mock" - assert len(package_info.jobs[job_state]) == jobs_count - if package_state == "normalized": - assert package_info.completed_at is None - else: - assert (pendulum.now() - package_info.completed_at).seconds < 2 - # get dict - package_info.asdict() - return package_info diff --git a/tests/common/storages/test_normalize_storage.py b/tests/common/storages/test_normalize_storage.py index 2749a0ce1d..5758429146 100644 --- a/tests/common/storages/test_normalize_storage.py +++ b/tests/common/storages/test_normalize_storage.py @@ -3,35 +3,10 @@ from dlt.common.utils import uniq_id from dlt.common.storages import NormalizeStorage, NormalizeStorageConfiguration from dlt.common.storages.exceptions import NoMigrationPathException -from dlt.common.storages.normalize_storage import TParsedNormalizeFileName from tests.utils import write_version, autouse_test_storage -@pytest.mark.skip() -def test_load_events_and_group_by_sender() -> None: - # TODO: create fixture with two sender ids and 3 files and check the result - pass - - -def test_build_extracted_file_name() -> None: - load_id = uniq_id() - name = ( - NormalizeStorage.build_extracted_file_stem("event", "table_with_parts__many", load_id) - + ".jsonl" - ) - assert NormalizeStorage.get_schema_name(name) == "event" - assert NormalizeStorage.parse_normalize_file_name(name) == TParsedNormalizeFileName( - "event", "table_with_parts__many", load_id, "jsonl" - ) - - # empty schema should be supported - name = NormalizeStorage.build_extracted_file_stem("", "table", load_id) + ".jsonl" - assert NormalizeStorage.parse_normalize_file_name(name) == TParsedNormalizeFileName( - "", "table", load_id, "jsonl" - ) - - def test_full_migration_path() -> None: # create directory structure s = NormalizeStorage(True) diff --git a/tests/common/storages/utils.py b/tests/common/storages/utils.py index 00ea29a859..91d8c3c77f 100644 --- a/tests/common/storages/utils.py +++ b/tests/common/storages/utils.py @@ -1,9 +1,27 @@ -from typing import List +import pytest +from typing import List, Sequence, Tuple from fsspec import AbstractFileSystem -from dlt.common import pendulum -from dlt.common.storages import FilesystemConfiguration +from dlt.common import pendulum, json +from dlt.common.configuration.resolve import resolve_configuration +from dlt.common.schema import Schema +from dlt.common.storages import ( + LoadStorageConfiguration, + FilesystemConfiguration, + LoadPackageInfo, + TJobState, + LoadStorage, +) from dlt.common.storages.fsspec_filesystem import FileItem, FileItemDict +from dlt.common.typing import StrAny +from dlt.common.utils import uniq_id + + +@pytest.fixture +def load_storage() -> LoadStorage: + C = resolve_configuration(LoadStorageConfiguration()) + s = LoadStorage(True, "jsonl", LoadStorage.ALL_SUPPORTED_FILE_FORMATS, C) + return s def assert_sample_files( @@ -62,3 +80,47 @@ def assert_sample_files( "parquet/mlb_players.parquet", "sample.txt", } + + +def start_loading_file( + s: LoadStorage, content: Sequence[StrAny], start_job: bool = True +) -> Tuple[str, str]: + load_id = uniq_id() + s.new_packages.create_package(load_id) + # write test file + file_name = s._write_temp_job_file(load_id, "mock_table", None, uniq_id(), content) + # write schema and schema update + s.new_packages.save_schema(load_id, Schema("mock")) + s.new_packages.save_schema_updates(load_id, {}) + s.commit_new_load_package(load_id) + assert_package_info(s, load_id, "normalized", "new_jobs") + if start_job: + s.normalized_packages.start_job(load_id, file_name) + assert_package_info(s, load_id, "normalized", "started_jobs") + return load_id, file_name + + +def assert_package_info( + storage: LoadStorage, + load_id: str, + package_state: str, + job_state: TJobState, + jobs_count: int = 1, +) -> LoadPackageInfo: + package_info = storage.get_load_package_info(load_id) + # make sure it is serializable + json.dumps(package_info) + # generate str + str(package_info) + package_info.asstr() + package_info.asstr(verbosity=1) + assert package_info.state == package_state + assert package_info.schema_name == "mock" + assert len(package_info.jobs[job_state]) == jobs_count + if package_state == "normalized": + assert package_info.completed_at is None + else: + assert (pendulum.now() - package_info.completed_at).seconds < 2 + # get dict + package_info.asdict() + return package_info diff --git a/tests/extract/test_extract.py b/tests/extract/test_extract.py index b5edf1b5ed..046ffc1f43 100644 --- a/tests/extract/test_extract.py +++ b/tests/extract/test_extract.py @@ -1,3 +1,4 @@ +import pytest import dlt from dlt.common import json from dlt.common.storages import NormalizeStorageConfiguration @@ -9,45 +10,42 @@ from tests.extract.utils import expect_extracted_file -def test_extract_select_tables() -> None: - def expect_tables(resource: DltResource) -> dlt.Schema: - # delete files - clean_test_storage() - source = DltSource(dlt.Schema("selectables"), "module", [resource(10)]) - schema = source.discover_schema() - - storage = ExtractorStorage(NormalizeStorageConfiguration()) - extract_id = storage.create_extract_id() - extract(extract_id, source, storage) - # odd and even tables must be in the source schema - assert len(source.schema.data_tables(include_incomplete=True)) == 2 - assert "odd_table" in source.schema._schema_tables - assert "even_table" in source.schema._schema_tables - # you must commit the files - assert len(storage.list_files_to_normalize_sorted()) == 0 - storage.commit_extract_files(extract_id) - # check resulting files - assert len(storage.list_files_to_normalize_sorted()) == 2 - expect_extracted_file(storage, "selectables", "odd_table", json.dumps([1, 3, 5, 7, 9])) - expect_extracted_file(storage, "selectables", "even_table", json.dumps([0, 2, 4, 6, 8])) - - # delete files - clean_test_storage() - storage = ExtractorStorage(NormalizeStorageConfiguration()) - # same thing but select only odd - source = DltSource(dlt.Schema("selectables"), "module", [resource]) - source = source.with_resources(resource.name) - source.selected_resources[resource.name].bind(10).select_tables("odd_table") - extract_id = storage.create_extract_id() - extract(extract_id, source, storage) - assert len(source.schema.data_tables(include_incomplete=True)) == 1 - assert "odd_table" in source.schema._schema_tables - storage.commit_extract_files(extract_id) - assert len(storage.list_files_to_normalize_sorted()) == 1 - expect_extracted_file(storage, "selectables", "odd_table", json.dumps([1, 3, 5, 7, 9])) - - return schema +def test_storage_reuse_package() -> None: + storage = ExtractorStorage(NormalizeStorageConfiguration()) + load_id = storage.create_load_package(dlt.Schema("first")) + # assign the same load id if schema "fists" is being extracted + assert storage.create_load_package(dlt.Schema("first")) == load_id + load_id_2 = storage.create_load_package(dlt.Schema("second")) + assert load_id_2 != load_id + # make sure we have only two packages + assert set(storage.new_packages.list_packages()) == {load_id, load_id_2} + # commit + storage.commit_new_load_package(load_id, dlt.Schema("first")) + # we have a new load id (the package with schema moved to extracted) + load_id_3 = storage.create_load_package(dlt.Schema("first")) + assert load_id != load_id_3 + load_id_4 = storage.create_load_package(dlt.Schema("first"), reuse_exiting_package=False) + assert load_id_4 != load_id_3 + + # this will fail - not all extracts committed + with pytest.raises(OSError): + storage.delete_empty_extract_folder() + # commit the rest + storage.commit_new_load_package(load_id_2, dlt.Schema("second")) + storage.commit_new_load_package(load_id_3, dlt.Schema("first")) + storage.commit_new_load_package(load_id_4, dlt.Schema("first")) + storage.delete_empty_extract_folder() + + # list extracted packages + assert set(storage.extracted_packages.list_packages()) == { + load_id, + load_id_2, + load_id_3, + load_id_4, + } + +def test_extract_select_tables() -> None: n_f = lambda i: ("odd" if i % 2 == 1 else "even") + "_table" @dlt.resource @@ -82,8 +80,8 @@ def input_gen(): dlt.Schema("selectables"), "module", [input_r, input_r.with_name("gen_clone")] ) storage = ExtractorStorage(NormalizeStorageConfiguration()) - extract_id = storage.create_extract_id() - extract(extract_id, source, storage) + load_id = storage.create_load_package(source.discover_schema()) + extract(load_id, source, storage) # both tables got generated assert "input_gen" in source.schema._schema_tables assert "gen_clone" in source.schema._schema_tables @@ -103,9 +101,49 @@ def tx_step(item): dlt.Schema("selectables"), "module", [input_r, (input_r | input_tx).with_name("tx_clone")] ) storage = ExtractorStorage(NormalizeStorageConfiguration()) - extract_id = storage.create_extract_id() - extract(extract_id, source, storage) + load_id = storage.create_load_package(source.discover_schema()) + extract(load_id, source, storage) assert "input_gen" in source.schema._schema_tables assert "tx_clone" in source.schema._schema_tables # mind that pipe name of the evaluated parent will have different name than the resource assert source.tx_clone._pipe.parent.name == "input_gen_tx_clone" + + +def expect_tables(resource: DltResource) -> dlt.Schema: + # delete files + clean_test_storage() + source = DltSource(dlt.Schema("selectables"), "module", [resource(10)]) + schema = source.discover_schema() + + storage = ExtractorStorage(NormalizeStorageConfiguration()) + load_id = storage.create_load_package(schema) + extract(load_id, source, storage) + # odd and even tables must be in the source schema + assert len(source.schema.data_tables(include_incomplete=True)) == 2 + assert "odd_table" in source.schema._schema_tables + assert "even_table" in source.schema._schema_tables + # you must commit the files + assert len(storage.list_files_to_normalize_sorted()) == 0 + storage.commit_new_load_package(load_id, source.schema) + storage.delete_empty_extract_folder() + # check resulting files + assert len(storage.list_files_to_normalize_sorted()) == 2 + expect_extracted_file(storage, "selectables", "odd_table", json.dumps([1, 3, 5, 7, 9])) + expect_extracted_file(storage, "selectables", "even_table", json.dumps([0, 2, 4, 6, 8])) + + # delete files + clean_test_storage() + storage = ExtractorStorage(NormalizeStorageConfiguration()) + # same thing but select only odd + source = DltSource(dlt.Schema("selectables"), "module", [resource]) + source = source.with_resources(resource.name) + source.selected_resources[resource.name].bind(10).select_tables("odd_table") + load_id = storage.create_load_package(schema) + extract(load_id, source, storage) + assert len(source.schema.data_tables(include_incomplete=True)) == 1 + assert "odd_table" in source.schema._schema_tables + storage.commit_new_load_package(load_id, source.schema) + assert len(storage.list_files_to_normalize_sorted()) == 1 + expect_extracted_file(storage, "selectables", "odd_table", json.dumps([1, 3, 5, 7, 9])) + + return schema diff --git a/tests/extract/test_incremental.py b/tests/extract/test_incremental.py index c37663604b..7c97ac5c1a 100644 --- a/tests/extract/test_incremental.py +++ b/tests/extract/test_incremental.py @@ -721,8 +721,11 @@ def standalone_some_data( yield from source_items info = p.run(standalone_some_data(item_type, now)) + print(p.last_trace.last_normalize_info) assert len(info.loads_ids) == 1 info = p.run(standalone_some_data(item_type, now)) + print(p.last_trace.last_normalize_info) + print(info) assert len(info.loads_ids) == 0 info = p.run(standalone_some_data(item_type, now), write_disposition="replace") assert len(info.loads_ids) == 1 diff --git a/tests/extract/utils.py b/tests/extract/utils.py index ee1eddeef5..40223c69e3 100644 --- a/tests/extract/utils.py +++ b/tests/extract/utils.py @@ -2,6 +2,7 @@ import pytest from itertools import zip_longest +from dlt.common.storages import PackageStorage, ParsedLoadJobFileName from dlt.common.typing import TDataItem, TDataItems from dlt.extract.extract import ExtractorStorage @@ -13,22 +14,25 @@ def expect_extracted_file( storage: ExtractorStorage, schema_name: str, table_name: str, content: str ) -> None: - files = storage.list_files_to_normalize_sorted() + load_ids = storage.extracted_packages.list_packages() gen = ( file - for file in files - if storage.get_schema_name(file) == schema_name - and storage.parse_normalize_file_name(file).table_name == table_name + for load_id in load_ids + for file in storage.extracted_packages.list_new_jobs(load_id) + if storage.extracted_packages.schema_name(load_id) == schema_name + and ParsedLoadJobFileName.parse(file).table_name == table_name ) file = next(gen, None) if file is None: - raise FileNotFoundError(storage.build_extracted_file_stem(schema_name, table_name, "***")) + raise FileNotFoundError( + PackageStorage.build_job_file_name(table_name, schema_name, validate_components=False) + ) assert file is not None # only one file expected with pytest.raises(StopIteration): next(gen) # load file and parse line by line - file_content: str = storage.storage.load(file) + file_content: str = storage.extracted_packages.storage.load(file) if content == "***": return for line, file_line in zip_longest(content.splitlines(), file_content.splitlines()): diff --git a/tests/load/bigquery/test_bigquery_client.py b/tests/load/bigquery/test_bigquery_client.py index 5bbc7b79be..a2ca9c53b1 100644 --- a/tests/load/bigquery/test_bigquery_client.py +++ b/tests/load/bigquery/test_bigquery_client.py @@ -62,7 +62,6 @@ def test_service_credentials_with_default(environment: Any) -> None: gcpc = GcpServiceAccountCredentials() gcpc.parse_native_representation(services_str) # check if credentials can be created - assert gcpc.to_service_account_credentials() is not None assert gcpc.to_native_credentials() is not None # reset failed default credentials timeout so we resolve below @@ -75,7 +74,7 @@ def test_service_credentials_with_default(environment: Any) -> None: # project id recovered from credentials assert gcpc.project_id == "level-dragon-333019" # check if credentials can be created - assert gcpc.to_service_account_credentials() is not None + assert gcpc.to_native_credentials() is not None # the default credentials are available assert gcpc.has_default_credentials() is True assert gcpc.default_credentials() is not None diff --git a/tests/load/filesystem/test_filesystem_client.py b/tests/load/filesystem/test_filesystem_client.py index b1fc2b2d09..56da484abc 100644 --- a/tests/load/filesystem/test_filesystem_client.py +++ b/tests/load/filesystem/test_filesystem_client.py @@ -4,7 +4,7 @@ import pytest from dlt.common.utils import digest128, uniq_id -from dlt.common.storages import LoadStorage, FileStorage +from dlt.common.storages import FileStorage, ParsedLoadJobFileName from dlt.destinations.impl.filesystem.filesystem import ( LoadFilesystemJob, @@ -71,7 +71,7 @@ def test_successful_load(write_disposition: str, layout: str, default_buckets_en assert jobs for job in jobs: assert job.state() == "completed" - job_info = LoadStorage.parse_job_file_name(job.file_name()) + job_info = ParsedLoadJobFileName.parse(job.file_name()) destination_path = posixpath.join( dataset_path, layout.format( diff --git a/tests/load/pipeline/test_arrow_loading.py b/tests/load/pipeline/test_arrow_loading.py index 3a113bfd6f..4a3c209c32 100644 --- a/tests/load/pipeline/test_arrow_loading.py +++ b/tests/load/pipeline/test_arrow_loading.py @@ -163,7 +163,7 @@ def some_data(): # Schema columns are normalized assert [c["name"] for c in schema_columns.values()] == expected_column_names - with norm_storage.storage.open_file(extract_files[0], "rb") as f: + with norm_storage.extracted_packages.storage.open_file(extract_files[0], "rb") as f: result_tbl = pa.parquet.read_table(f) # Parquet schema is written with normalized column names diff --git a/tests/load/pipeline/test_pipelines.py b/tests/load/pipeline/test_pipelines.py index 9eb570ee6a..b3a1cf9d84 100644 --- a/tests/load/pipeline/test_pipelines.py +++ b/tests/load/pipeline/test_pipelines.py @@ -101,12 +101,17 @@ def data_fun() -> Iterator[Any]: # set no dataset name -> if destination does not support it we revert to default p._set_dataset_name(None) assert p.dataset_name in possible_dataset_names + # the last package contains just the state (we added a new schema) + last_load_id = p.list_extracted_load_packages()[-1] + state_package = p.get_load_package_info(last_load_id) + assert len(state_package.jobs["new_jobs"]) == 1 + assert state_package.schema_name == p.default_schema_name p.normalize() info = p.load(dataset_name="d" + uniq_id()) print(p.dataset_name) assert info.pipeline is p # two packages in two different schemas were loaded - assert len(info.loads_ids) == 2 + assert len(info.loads_ids) == 3 # if loaded to single data, double the data was loaded to a single table because the schemas overlapped if use_single_dataset: @@ -386,7 +391,7 @@ def test_pipeline_data_writer_compression( if disable_compression: for f in s.list_files_to_normalize_sorted(): with pytest.raises(gzip.BadGzipFile): - gzip.open(s.storage.make_full_path(f), "rb").read() + gzip.open(s.extracted_packages.storage.make_full_path(f), "rb").read() p.normalize() info = p.load() assert_table(p, "data", data, info=info) diff --git a/tests/load/pipeline/test_restore_state.py b/tests/load/pipeline/test_restore_state.py index 6ee013f05d..381068f1e1 100644 --- a/tests/load/pipeline/test_restore_state.py +++ b/tests/load/pipeline/test_restore_state.py @@ -65,6 +65,7 @@ def test_restore_state_utils(destination_config: DestinationTestConfiguration) - initial_state = p._get_state() # now add table to schema and sync initial_state["_local"]["_last_extracted_at"] = pendulum.now() + initial_state["_local"]["_last_extracted_hash"] = initial_state["_version_hash"] # add _dlt_id and _dlt_load_id resource = state_resource(initial_state) resource.apply_hints( @@ -127,11 +128,11 @@ def test_restore_state_utils(destination_config: DestinationTestConfiguration) - assert local_state != new_local_state # version increased assert local_state["_state_version"] + 1 == new_local_state["_state_version"] - # last extracted timestamp not present - assert "_last_extracted_at" not in new_local_state_local + # last extracted hash does not match current version hash + assert new_local_state_local["_last_extracted_hash"] != new_local_state["_version_hash"] # use the state context manager again but do not change state - # because _last_extracted_at is not present, the version will not change but state will be extracted anyway + # because _last_extracted_hash is not present (or different), the version will not change but state will be extracted anyway with p.managed_state(extract_state=True): pass new_local_state_2 = p._get_state() @@ -139,6 +140,8 @@ def test_restore_state_utils(destination_config: DestinationTestConfiguration) - assert new_local_state == new_local_state_2 # there's extraction timestamp assert "_last_extracted_at" in new_local_state_2_local + # and extract hash is == hash + assert new_local_state_2_local["_last_extracted_hash"] == new_local_state_2["_version_hash"] # but the version didn't change assert new_local_state["_state_version"] == new_local_state_2["_state_version"] p.normalize(loader_file_format=destination_config.file_format) diff --git a/tests/load/test_dummy_client.py b/tests/load/test_dummy_client.py index bd20a0ea95..bdf3347580 100644 --- a/tests/load/test_dummy_client.py +++ b/tests/load/test_dummy_client.py @@ -1,17 +1,14 @@ -import shutil import os from concurrent.futures import ThreadPoolExecutor from time import sleep -from typing import List, Sequence, Tuple import pytest from unittest.mock import patch +from typing import List from dlt.common.exceptions import TerminalException, TerminalValueError -from dlt.common.schema import Schema -from dlt.common.storages import FileStorage, LoadStorage +from dlt.common.storages import FileStorage, LoadStorage, PackageStorage, ParsedLoadJobFileName from dlt.common.storages.load_storage import JobWithUnsupportedWriterException -from dlt.common.utils import uniq_id -from dlt.common.destination.reference import Destination, LoadJob, TDestination +from dlt.common.destination.reference import LoadJob, TDestination from dlt.load import Load from dlt.destinations.job_impl import EmptyLoadJob @@ -33,7 +30,6 @@ skip_if_not_active("dummy") - NORMALIZED_FILES = [ "event_user.839c6e6b514e427687586ccc65bf133f.0.jsonl", "event_loop_interrupted.839c6e6b514e427687586ccc65bf133f.0.jsonl", @@ -54,16 +50,16 @@ def test_spool_job_started() -> None: # default config keeps the job always running load = setup_loader() load_id, schema = prepare_load_package(load.load_storage, NORMALIZED_FILES) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) assert len(files) == 2 jobs: List[LoadJob] = [] for f in files: job = Load.w_spool_job(load, f, load_id, schema) assert type(job) is dummy_impl.LoadDummyJob assert job.state() == "running" - assert load.load_storage.storage.has_file( - load.load_storage._get_job_file_path( - load_id, LoadStorage.STARTED_JOBS_FOLDER, job.file_name() + assert load.load_storage.normalized_packages.storage.has_file( + load.load_storage.normalized_packages.get_job_file_path( + load_id, PackageStorage.STARTED_JOBS_FOLDER, job.file_name() ) ) jobs.append(job) @@ -87,14 +83,19 @@ def test_unsupported_write_disposition() -> None: # mock unsupported disposition schema.get_table("event_user")["write_disposition"] = "skip" # write back schema - load.load_storage._save_schema(schema, load_id) + load.load_storage.normalized_packages.save_schema(load_id, schema) with ThreadPoolExecutor() as pool: load.run(pool) # job with unsupported write disp. is failed - exception = [ - f for f in load.load_storage.list_failed_jobs(load_id) if f.endswith(".exception") + exception_file = [ + f + for f in load.load_storage.normalized_packages.list_failed_jobs(load_id) + if f.endswith(".exception") ][0] - assert "LoadClientUnsupportedWriteDisposition" in load.load_storage.storage.load(exception) + assert ( + "LoadClientUnsupportedWriteDisposition" + in load.load_storage.normalized_packages.storage.load(exception_file) + ) def test_get_new_jobs_info() -> None: @@ -125,11 +126,11 @@ def test_get_completed_table_chain_single_job_per_table() -> None: ) # actually complete loop_top_job_table = get_top_level_table(schema.tables, "event_loop_interrupted") - load.load_storage.start_job( + load.load_storage.normalized_packages.start_job( load_id, "event_loop_interrupted.839c6e6b514e427687586ccc65bf133f.0.jsonl" ) assert load.get_completed_table_chain(load_id, schema, loop_top_job_table) is None - load.load_storage.complete_job( + load.load_storage.normalized_packages.complete_job( load_id, "event_loop_interrupted.839c6e6b514e427687586ccc65bf133f.0.jsonl" ) assert load.get_completed_table_chain(load_id, schema, loop_top_job_table) == [ @@ -144,15 +145,15 @@ def test_spool_job_failed() -> None: # this config fails job on start load = setup_loader(client_config=DummyClientConfiguration(fail_prob=1.0)) load_id, schema = prepare_load_package(load.load_storage, NORMALIZED_FILES) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) jobs: List[LoadJob] = [] for f in files: job = Load.w_spool_job(load, f, load_id, schema) assert type(job) is EmptyLoadJob assert job.state() == "failed" - assert load.load_storage.storage.has_file( - load.load_storage._get_job_file_path( - load_id, LoadStorage.STARTED_JOBS_FOLDER, job.file_name() + assert load.load_storage.normalized_packages.storage.has_file( + load.load_storage.normalized_packages.get_job_file_path( + load_id, PackageStorage.STARTED_JOBS_FOLDER, job.file_name() ) ) jobs.append(job) @@ -160,17 +161,17 @@ def test_spool_job_failed() -> None: remaining_jobs = load.complete_jobs(load_id, jobs, schema) assert len(remaining_jobs) == 0 for job in jobs: - assert load.load_storage.storage.has_file( - load.load_storage._get_job_file_path( - load_id, LoadStorage.FAILED_JOBS_FOLDER, job.file_name() + assert load.load_storage.normalized_packages.storage.has_file( + load.load_storage.normalized_packages.get_job_file_path( + load_id, PackageStorage.FAILED_JOBS_FOLDER, job.file_name() ) ) - assert load.load_storage.storage.has_file( - load.load_storage._get_job_file_path( - load_id, LoadStorage.FAILED_JOBS_FOLDER, job.file_name() + ".exception" + assert load.load_storage.normalized_packages.storage.has_file( + load.load_storage.normalized_packages.get_job_file_path( + load_id, PackageStorage.FAILED_JOBS_FOLDER, job.file_name() + ".exception" ) ) - started_files = load.load_storage.list_started_jobs(load_id) + started_files = load.load_storage.normalized_packages.list_started_jobs(load_id) assert len(started_files) == 0 # test the whole flow @@ -222,7 +223,7 @@ def test_spool_job_retry_new() -> None: # this config retries job on start (transient fail) load = setup_loader(client_config=DummyClientConfiguration(retry_prob=1.0)) load_id, schema = prepare_load_package(load.load_storage, NORMALIZED_FILES) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) for f in files: job = Load.w_spool_job(load, f, load_id, schema) assert job.state() == "retry" @@ -245,33 +246,33 @@ def test_spool_job_retry_started() -> None: load = setup_loader() # dummy_impl.CLIENT_CONFIG = DummyClientConfiguration load_id, schema = prepare_load_package(load.load_storage, NORMALIZED_FILES) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) jobs: List[LoadJob] = [] for f in files: job = Load.w_spool_job(load, f, load_id, schema) assert type(job) is dummy_impl.LoadDummyJob assert job.state() == "running" - assert load.load_storage.storage.has_file( - load.load_storage._get_job_file_path( - load_id, LoadStorage.STARTED_JOBS_FOLDER, job.file_name() + assert load.load_storage.normalized_packages.storage.has_file( + load.load_storage.normalized_packages.get_job_file_path( + load_id, PackageStorage.STARTED_JOBS_FOLDER, job.file_name() ) ) # mock job config to make it retry job.config.retry_prob = 1.0 jobs.append(job) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) assert len(files) == 0 # should retry, that moves jobs into new folder remaining_jobs = load.complete_jobs(load_id, jobs, schema) assert len(remaining_jobs) == 0 # clear retry flag dummy_impl.JOBS = {} - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) assert len(files) == 2 # parse the new job names - for fn in load.load_storage.list_new_jobs(load_id): + for fn in load.load_storage.normalized_packages.list_new_jobs(load_id): # we failed when already running the job so retry count will increase - assert LoadStorage.parse_job_file_name(fn).retry_count == 1 + assert ParsedLoadJobFileName.parse(fn).retry_count == 1 for f in files: job = Load.w_spool_job(load, f, load_id, schema) assert job.state() == "running" @@ -281,9 +282,11 @@ def test_try_retrieve_job() -> None: load = setup_loader() load_id, schema = prepare_load_package(load.load_storage, NORMALIZED_FILES) # manually move jobs to started - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) for f in files: - load.load_storage.start_job(load_id, FileStorage.get_file_name_from_file_path(f)) + load.load_storage.normalized_packages.start_job( + load_id, FileStorage.get_file_name_from_file_path(f) + ) # dummy client may retrieve jobs that it created itself, jobs in started folder are unknown # and returned as terminal with load.destination.client(schema, load.initial_client_config) as c: @@ -306,7 +309,7 @@ def test_try_retrieve_job() -> None: def test_completed_loop() -> None: load = setup_loader(client_config=DummyClientConfiguration(completed_prob=1.0)) - assert_complete_job(load, load.load_storage.storage) + assert_complete_job(load) def test_failed_loop() -> None: @@ -315,14 +318,14 @@ def test_failed_loop() -> None: delete_completed_jobs=True, client_config=DummyClientConfiguration(fail_prob=1.0) ) # actually not deleted because one of the jobs failed - assert_complete_job(load, load.load_storage.storage, should_delete_completed=False) + assert_complete_job(load, should_delete_completed=False) def test_completed_loop_with_delete_completed() -> None: load = setup_loader(client_config=DummyClientConfiguration(completed_prob=1.0)) load.load_storage = load.create_storage(is_storage_owner=False) load.load_storage.config.delete_completed_jobs = True - assert_complete_job(load, load.load_storage.storage, should_delete_completed=True) + assert_complete_job(load, should_delete_completed=True) def test_retry_on_new_loop() -> None: @@ -332,30 +335,30 @@ def test_retry_on_new_loop() -> None: with ThreadPoolExecutor() as pool: # 1st retry load.run(pool) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) assert len(files) == 2 # 2nd retry load.run(pool) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) assert len(files) == 2 # jobs will be completed load = setup_loader(client_config=DummyClientConfiguration(completed_prob=1.0)) load.run(pool) - files = load.load_storage.list_new_jobs(load_id) + files = load.load_storage.normalized_packages.list_new_jobs(load_id) assert len(files) == 0 # complete package load.run(pool) - assert not load.load_storage.storage.has_folder( + assert not load.load_storage.normalized_packages.storage.has_folder( load.load_storage.get_normalized_package_path(load_id) ) # parse the completed job names - completed_path = load.load_storage.get_completed_package_path(load_id) - for fn in load.load_storage.storage.list_folder_files( - os.path.join(completed_path, LoadStorage.COMPLETED_JOBS_FOLDER) + completed_path = load.load_storage.loaded_packages.get_package_path(load_id) + for fn in load.load_storage.loaded_packages.storage.list_folder_files( + os.path.join(completed_path, PackageStorage.COMPLETED_JOBS_FOLDER) ): # we update a retry count in each case - assert LoadStorage.parse_job_file_name(fn).retry_count == 2 + assert ParsedLoadJobFileName.parse(fn).retry_count == 2 def test_retry_exceptions() -> None: @@ -415,34 +418,34 @@ def test_terminal_exceptions() -> None: raise AssertionError() -def assert_complete_job( - load: Load, storage: FileStorage, should_delete_completed: bool = False -) -> None: +def assert_complete_job(load: Load, should_delete_completed: bool = False) -> None: load_id, _ = prepare_load_package(load.load_storage, NORMALIZED_FILES) # will complete all jobs with patch.object(dummy_impl.DummyClient, "complete_load") as complete_load: with ThreadPoolExecutor() as pool: load.run(pool) # did process schema update - assert storage.has_file( + assert load.load_storage.storage.has_file( os.path.join( load.load_storage.get_normalized_package_path(load_id), - LoadStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME, + PackageStorage.APPLIED_SCHEMA_UPDATES_FILE_NAME, ) ) # will finalize the whole package load.run(pool) # moved to loaded - assert not storage.has_folder(load.load_storage.get_normalized_package_path(load_id)) - completed_path = load.load_storage._get_job_folder_completed_path( + assert not load.load_storage.storage.has_folder( + load.load_storage.get_normalized_package_path(load_id) + ) + completed_path = load.load_storage.loaded_packages.get_job_folder_path( load_id, "completed_jobs" ) if should_delete_completed: # package was deleted - assert not storage.has_folder(completed_path) + assert not load.load_storage.loaded_packages.storage.has_folder(completed_path) else: # package not deleted - assert storage.has_folder(completed_path) + assert load.load_storage.loaded_packages.storage.has_folder(completed_path) # complete load on client was called complete_load.assert_called_once_with(load_id) diff --git a/tests/load/utils.py b/tests/load/utils.py index dc6576be86..d2ade30ade 100644 --- a/tests/load/utils.py +++ b/tests/load/utils.py @@ -1,8 +1,7 @@ import contextlib -from importlib import import_module import codecs import os -from typing import Any, Iterator, List, Sequence, cast, IO, Tuple, Optional, Dict, Union +from typing import Any, Iterator, List, Sequence, IO, Tuple, Optional, Dict, Union import shutil from pathlib import Path from dataclasses import dataclass @@ -18,14 +17,13 @@ LoadJob, DestinationClientStagingConfiguration, WithStagingDataset, - TDestinationReferenceArg, ) from dlt.common.destination import TLoaderFileFormat, Destination from dlt.common.data_writers import DataWriter -from dlt.common.schema import TColumnSchema, TTableSchemaColumns, Schema +from dlt.common.schema import TTableSchemaColumns, Schema from dlt.common.storages import SchemaStorage, FileStorage, SchemaStorageConfiguration from dlt.common.schema.utils import new_table -from dlt.common.storages.load_storage import ParsedLoadJobFileName, LoadStorage +from dlt.common.storages import ParsedLoadJobFileName, LoadStorage, PackageStorage from dlt.common.typing import StrAny from dlt.common.utils import uniq_id @@ -510,25 +508,30 @@ def prepare_load_package( load_storage: LoadStorage, cases: Sequence[str], write_disposition: str = "append" ) -> Tuple[str, Schema]: load_id = uniq_id() - load_storage.create_temp_load_package(load_id) + load_storage.new_packages.create_package(load_id) for case in cases: path = f"./tests/load/cases/loading/{case}" shutil.copy( - path, load_storage.storage.make_full_path(f"{load_id}/{LoadStorage.NEW_JOBS_FOLDER}") + path, + load_storage.new_packages.storage.make_full_path( + load_storage.new_packages.get_job_folder_path(load_id, "new_jobs") + ), ) schema_path = Path("./tests/load/cases/loading/schema.json") + # load without migration data = json.loads(schema_path.read_text(encoding="utf8")) for name, table in data["tables"].items(): if name.startswith("_dlt"): continue table["write_disposition"] = write_disposition - Path(load_storage.storage.make_full_path(load_id)).joinpath(schema_path.name).write_text( - json.dumps(data), encoding="utf8" + full_package_path = load_storage.new_packages.storage.make_full_path( + load_storage.new_packages.get_package_path(load_id) ) + Path(full_package_path).joinpath(schema_path.name).write_text(json.dumps(data), encoding="utf8") schema_update_path = "./tests/load/cases/loading/schema_updates.json" - shutil.copy(schema_update_path, load_storage.storage.make_full_path(load_id)) + shutil.copy(schema_update_path, full_package_path) - load_storage.commit_temp_load_package(load_id) - schema = load_storage.load_package_schema(load_id) + load_storage.commit_new_load_package(load_id) + schema = load_storage.normalized_packages.load_schema(load_id) return load_id, schema diff --git a/tests/normalize/test_normalize.py b/tests/normalize/test_normalize.py index d0f02bdfa1..10a83cd87b 100644 --- a/tests/normalize/test_normalize.py +++ b/tests/normalize/test_normalize.py @@ -8,10 +8,11 @@ from dlt.common import json from dlt.common.schema.schema import Schema +from dlt.common.storages.exceptions import SchemaNotFoundError from dlt.common.utils import uniq_id from dlt.common.typing import StrAny from dlt.common.data_types import TDataType -from dlt.common.storages import NormalizeStorage, LoadStorage +from dlt.common.storages import NormalizeStorage, LoadStorage, ParsedLoadJobFileName, PackageStorage from dlt.common.destination import DestinationCapabilitiesContext from dlt.common.configuration.container import Container @@ -265,7 +266,7 @@ def test_normalize_raw_type_hints( def test_multiprocess_row_counting( caps: DestinationCapabilitiesContext, raw_normalize: Normalize ) -> None: - extract_cases(raw_normalize.normalize_storage, ["github.events.load_page_1_duck"]) + extract_cases(raw_normalize, ["github.events.load_page_1_duck"]) # use real process pool in tests with ProcessPoolExecutor(max_workers=4) as p: raw_normalize.run(p) @@ -275,14 +276,19 @@ def test_multiprocess_row_counting( @pytest.mark.parametrize("caps", ALL_CAPABILITIES, indirect=True) -def test_normalize_many_schemas( +def test_normalize_many_packages( caps: DestinationCapabilitiesContext, rasa_normalize: Normalize ) -> None: extract_cases( - rasa_normalize.normalize_storage, + rasa_normalize, [ "event.event.many_load_2", "event.event.user_load_1", + ], + ) + extract_cases( + rasa_normalize, + [ "ethereum.blocks.9c1d9b504ea240a482b007788d5cd61c_2", ], ) @@ -295,7 +301,7 @@ def test_normalize_many_schemas( schemas = [] # load all schemas for load_id in loads: - schema = rasa_normalize.load_storage.load_package_schema(load_id) + schema = rasa_normalize.load_storage.normalized_packages.load_schema(load_id) schemas.append(schema.name) # expect event tables if schema.name == "event": @@ -312,13 +318,13 @@ def test_normalize_many_schemas( def test_normalize_typed_json( caps: DestinationCapabilitiesContext, raw_normalize: Normalize ) -> None: - extract_items(raw_normalize.normalize_storage, [JSON_TYPED_DICT], "special", "special") + extract_items(raw_normalize.normalize_storage, [JSON_TYPED_DICT], Schema("special"), "special") with ThreadPoolExecutor(max_workers=1) as pool: raw_normalize.run(pool) loads = raw_normalize.load_storage.list_normalized_packages() assert len(loads) == 1 # load all schemas - schema = raw_normalize.load_storage.load_package_schema(loads[0]) + schema = raw_normalize.load_storage.normalized_packages.load_schema(loads[0]) assert schema.name == "special" # named as schema - default fallback table = schema.get_table_columns("special", include_incomplete=True) @@ -330,24 +336,24 @@ def test_normalize_typed_json( @pytest.mark.parametrize("caps", ALL_CAPABILITIES, indirect=True) def test_schema_changes(caps: DestinationCapabilitiesContext, raw_normalize: Normalize) -> None: doc = {"str": "text", "int": 1} - extract_items(raw_normalize.normalize_storage, [doc], "evolution", "doc") - load_id = normalize_pending(raw_normalize, "evolution") + extract_items(raw_normalize.normalize_storage, [doc], Schema("evolution"), "doc") + load_id = normalize_pending(raw_normalize) _, table_files = expect_load_package(raw_normalize.load_storage, load_id, ["doc"]) get_line_from_file(raw_normalize.load_storage, table_files["doc"], 0) assert len(table_files["doc"]) == 1 - s: Schema = raw_normalize.load_or_create_schema(raw_normalize.schema_storage, "evolution") - doc_table = s.get_table("doc") + schema = raw_normalize.schema_storage.load_schema("evolution") + doc_table = schema.get_table("doc") assert "str" in doc_table["columns"] assert "int" in doc_table["columns"] # add column to doc in second step doc2 = {"str": "text", "int": 1, "bool": True} - extract_items(raw_normalize.normalize_storage, [doc, doc2, doc], "evolution", "doc") - load_id = normalize_pending(raw_normalize, "evolution") + extract_items(raw_normalize.normalize_storage, [doc, doc2, doc], schema, "doc") + load_id = normalize_pending(raw_normalize) _, table_files = expect_load_package(raw_normalize.load_storage, load_id, ["doc"]) assert len(table_files["doc"]) == 1 - s = raw_normalize.load_or_create_schema(raw_normalize.schema_storage, "evolution") - doc_table = s.get_table("doc") + schema = raw_normalize.schema_storage.load_schema("evolution") + doc_table = schema.get_table("doc") assert "bool" in doc_table["columns"] # add and change several tables in one step @@ -355,19 +361,22 @@ def test_schema_changes(caps: DestinationCapabilitiesContext, raw_normalize: Nor doc_v = {"int": "hundred"} doc3_2v = {"comp": [doc2]} doc3_doc_v = {"comp": [doc_v]} - extract_items(raw_normalize.normalize_storage, [doc3, doc, doc_v], "evolution", "doc") - extract_items(raw_normalize.normalize_storage, [doc3_2v, doc3_doc_v], "evolution", "doc") - load_id = normalize_pending(raw_normalize, "evolution") + extract_items( + raw_normalize.normalize_storage, [doc3, doc, doc_v, doc3_2v, doc3_doc_v], schema, "doc" + ) + # schema = raw_normalize.schema_storage.load_schema("evolution") + # extract_items(raw_normalize.normalize_storage, [doc3_2v, doc3_doc_v], schema, "doc") + load_id = normalize_pending(raw_normalize) _, table_files = expect_load_package(raw_normalize.load_storage, load_id, ["doc", "doc__comp"]) assert len(table_files["doc"]) == 1 assert len(table_files["doc__comp"]) == 1 - s = raw_normalize.load_or_create_schema(raw_normalize.schema_storage, "evolution") - doc_table = s.get_table("doc") + schema = raw_normalize.schema_storage.load_schema("evolution") + doc_table = schema.get_table("doc") assert {"_dlt_load_id", "_dlt_id", "str", "int", "bool", "int__v_text"} == set( doc_table["columns"].keys() ) - doc__comp_table = s.get_table("doc__comp") + doc__comp_table = schema.get_table("doc__comp") assert doc__comp_table["parent"] == "doc" assert { "_dlt_id", @@ -400,7 +409,7 @@ def assert_schema(_schema: Schema): assert "reactions__x1" in _schema.tables["issues"]["columns"] assert "reactions__1" not in _schema.tables["issues"]["columns"] - schema = raw_normalize.load_or_create_schema(raw_normalize.schema_storage, "github") + schema = raw_normalize.schema_storage.load_schema("github") assert_schema(schema) load_id = extract_and_normalize_cases(raw_normalize, ["github.issues.load_page_5_duck"]) @@ -414,7 +423,7 @@ def assert_schema(_schema: Schema): _, lines = get_line_from_file(raw_normalize.load_storage, table_files["issues"], 0) # insert writer adds 2 lines assert lines in (100, 102) - schema = raw_normalize.load_or_create_schema(raw_normalize.schema_storage, "github") + schema = raw_normalize.schema_storage.load_schema("github") assert_schema(schema) @@ -485,13 +494,14 @@ def test_group_worker_files() -> None: def extract_items( - normalize_storage: NormalizeStorage, items: Sequence[StrAny], schema_name: str, table_name: str -) -> None: + normalize_storage: NormalizeStorage, items: Sequence[StrAny], schema: Schema, table_name: str +) -> str: extractor = ExtractorStorage(normalize_storage.config) - extract_id = extractor.create_extract_id() - extractor.write_data_item("puae-jsonl", extract_id, schema_name, table_name, items, None) - extractor.close_writers(extract_id) - extractor.commit_extract_files(extract_id) + load_id = extractor.create_load_package(schema) + extractor.write_data_item("puae-jsonl", load_id, schema.name, table_name, items, None) + extractor.close_writers(load_id) + extractor.commit_new_load_package(load_id, schema) + return load_id def normalize_event_user( @@ -503,27 +513,53 @@ def normalize_event_user( def extract_and_normalize_cases(normalize: Normalize, cases: Sequence[str]) -> str: - extract_cases(normalize.normalize_storage, cases) + extract_cases(normalize, cases) return normalize_pending(normalize) -def normalize_pending(normalize: Normalize, schema_name: str = "event") -> str: - load_id = uniq_id() - normalize.load_storage.create_temp_load_package(load_id) +def normalize_pending(normalize: Normalize) -> str: # pool not required for map_single - files = normalize.normalize_storage.list_files_to_normalize_sorted() - # create schema if it does not exist - for schema_name, files_in_schema in normalize.normalize_storage.group_by_schema(files): - normalize.spool_files(schema_name, load_id, normalize.map_single, list(files_in_schema)) + load_ids = normalize.normalize_storage.extracted_packages.list_packages() + assert len(load_ids) == 1, "Only one package allowed or rewrite tests" + for load_id in load_ids: + normalize.load_storage.new_packages.create_package(load_id) + # read schema from package + schema = normalize.normalize_storage.extracted_packages.load_schema(load_id) + # get files + schema_files = normalize.normalize_storage.extracted_packages.list_new_jobs(load_id) + # normalize without pool + normalize.spool_files(load_id, schema, normalize.map_single, schema_files) + return load_id -def extract_cases(normalize_storage: NormalizeStorage, cases: Sequence[str]) -> None: +def extract_cases(normalize: Normalize, cases: Sequence[str]) -> None: + items: List[StrAny] = [] for case in cases: - schema_name, table_name, _, _ = NormalizeStorage.parse_normalize_file_name(case + ".jsonl") + # our cases have schema and table name encoded in file name + schema_name, table_name, _ = case.split(".", maxsplit=3) with open(json_case_path(case), "rb") as f: - items = json.load(f) - extract_items(normalize_storage, items, schema_name, table_name) + item = json.load(f) + if isinstance(item, list): + items.extend(item) + else: + items.append(item) + # we assume that all items belonged to a single schema + extract_items( + normalize.normalize_storage, + items, + load_or_create_schema(normalize, schema_name), + table_name, + ) + + +def load_or_create_schema(normalize: Normalize, schema_name: str) -> Schema: + try: + schema = normalize.schema_storage.load_schema(schema_name) + schema.update_normalizers() + except SchemaNotFoundError: + schema = Schema(schema_name) + return schema def expect_load_package( @@ -533,7 +569,7 @@ def expect_load_package( full_schema_update: bool = True, ) -> Tuple[List[str], Dict[str, List[str]]]: # normalize tables as paths (original json is snake case so we may do it without real lineage info) - schema = load_storage.load_package_schema(load_id) + schema = load_storage.normalized_packages.load_schema(load_id) # we are still in destination caps context so schema contains length assert schema.naming.max_length > 0 expected_tables = [ @@ -543,14 +579,21 @@ def expect_load_package( # find jobs and processed files files = load_storage.list_new_jobs(load_id) - files_tables = [load_storage.parse_job_file_name(file).table_name for file in files] + files_tables = [ParsedLoadJobFileName.parse(file).table_name for file in files] assert set(files_tables) == set(expected_tables) ofl: Dict[str, List[str]] = {} for expected_table in expected_tables: # find all files for particular table, ignoring file id - file_mask = load_storage.build_job_file_name(expected_table, "*", validate_components=False) + file_mask = PackageStorage.build_job_file_name( + expected_table, + "*", + validate_components=False, + loader_file_format=load_storage.loader_file_format, + ) # files are in normalized//new_jobs - file_path = load_storage._get_job_file_path(load_id, "new_jobs", file_mask) + file_path = load_storage.normalized_packages.get_job_file_path( + load_id, "new_jobs", file_mask + ) candidates = [f for f in files if fnmatch(f, file_path)] # assert len(candidates) == 1 ofl[expected_table] = candidates @@ -568,7 +611,7 @@ def get_line_from_file( ) -> Tuple[str, int]: lines = [] for file in loaded_files: - with load_storage.storage.open_file(file) as f: + with load_storage.normalized_packages.storage.open_file(file) as f: lines.extend(f.readlines()) return lines[return_line], len(lines) @@ -576,6 +619,6 @@ def get_line_from_file( def assert_timestamp_data_type(load_storage: LoadStorage, data_type: TDataType) -> None: # load generated schema loads = load_storage.list_normalized_packages() - event_schema = load_storage.load_package_schema(loads[0]) + event_schema = load_storage.normalized_packages.load_schema(loads[0]) # in raw normalize timestamp column must not be coerced to timestamp assert event_schema.get_table_columns("event")["timestamp"]["data_type"] == data_type diff --git a/tests/pipeline/cases/github_pipeline/github_extract.py b/tests/pipeline/cases/github_pipeline/github_extract.py index 9bf7944b53..6be6643947 100644 --- a/tests/pipeline/cases/github_pipeline/github_extract.py +++ b/tests/pipeline/cases/github_pipeline/github_extract.py @@ -15,5 +15,3 @@ github_source.add_limit(limit) info = p.extract(github_source) print(info) - # normalize - don't load - p.normalize() diff --git a/tests/pipeline/cases/github_pipeline/github_normalize.py b/tests/pipeline/cases/github_pipeline/github_normalize.py new file mode 100644 index 0000000000..30a45a2631 --- /dev/null +++ b/tests/pipeline/cases/github_pipeline/github_normalize.py @@ -0,0 +1,6 @@ +import dlt + +if __name__ == "__main__": + p = dlt.attach("dlt_github_pipeline") + info = p.normalize() + print(info) diff --git a/tests/pipeline/cases/github_pipeline/github_pipeline.py b/tests/pipeline/cases/github_pipeline/github_pipeline.py index 789fcc4ef3..e7efef73d9 100644 --- a/tests/pipeline/cases/github_pipeline/github_pipeline.py +++ b/tests/pipeline/cases/github_pipeline/github_pipeline.py @@ -13,12 +13,13 @@ def github(): primary_key="id", merge_key=("node_id", "url"), ) - def load_issues(): + def load_issues(created_at=dlt.sources.incremental[str]("created_at")): # noqa: B008 # we should be in TEST_STORAGE folder with open( "../tests/normalize/cases/github.issues.load_page_5_duck.json", "r", encoding="utf-8" ) as f: - yield from json.load(f) + issues = sorted(json.load(f), key=lambda x: x["created_at"]) + yield from issues return load_issues diff --git a/tests/pipeline/test_arrow_sources.py b/tests/pipeline/test_arrow_sources.py index 1a877818e3..051845996b 100644 --- a/tests/pipeline/test_arrow_sources.py +++ b/tests/pipeline/test_arrow_sources.py @@ -49,7 +49,7 @@ def some_data(): assert len(extract_files) == 1 - with norm_storage.storage.open_file(extract_files[0], "rb") as f: + with norm_storage.extracted_packages.storage.open_file(extract_files[0], "rb") as f: extracted_bytes = f.read() info = pipeline.normalize() @@ -58,9 +58,9 @@ def some_data(): load_id = pipeline.list_normalized_load_packages()[0] storage = pipeline._get_load_storage() - jobs = storage.list_new_jobs(load_id) + jobs = storage.normalized_packages.list_new_jobs(load_id) job = [j for j in jobs if "some_data" in j][0] - with storage.storage.open_file(job, "rb") as f: + with storage.normalized_packages.storage.open_file(job, "rb") as f: normalized_bytes = f.read() # Normalized is linked/copied exactly and should be the same as the extracted file @@ -127,9 +127,9 @@ def some_data(): load_id = pipeline.list_normalized_load_packages()[0] storage = pipeline._get_load_storage() - jobs = storage.list_new_jobs(load_id) + jobs = storage.normalized_packages.list_new_jobs(load_id) job = [j for j in jobs if "some_data" in j][0] - with storage.storage.open_file(job, "r") as f: + with storage.normalized_packages.storage.open_file(job, "r") as f: result = [json.loads(line) for line in f] for row in result: row["decimal"] = Decimal(row["decimal"]) @@ -273,9 +273,9 @@ def some_data(): load_id = pipeline.list_normalized_load_packages()[0] storage = pipeline._get_load_storage() - jobs = storage.list_new_jobs(load_id) + jobs = storage.normalized_packages.list_new_jobs(load_id) job = [j for j in jobs if "some_data" in j][0] - with storage.storage.open_file(job, "rb") as f: + with storage.normalized_packages.storage.open_file(job, "rb") as f: tbl = pa.parquet.read_table(f) assert len(tbl) == 5432 diff --git a/tests/pipeline/test_dlt_versions.py b/tests/pipeline/test_dlt_versions.py index faf4d8712a..5cf1857dfa 100644 --- a/tests/pipeline/test_dlt_versions.py +++ b/tests/pipeline/test_dlt_versions.py @@ -1,3 +1,4 @@ +import pytest import tempfile import shutil from importlib.metadata import version as pkg_version @@ -5,10 +6,16 @@ import dlt from dlt.common import json from dlt.common.runners import Venv +from dlt.common.storages.exceptions import StorageMigrationError from dlt.common.utils import custom_environ, set_working_dir from dlt.common.configuration.paths import get_dlt_data_dir from dlt.common.storages import FileStorage -from dlt.common.schema.typing import LOADS_TABLE_NAME, VERSION_TABLE_NAME, TStoredSchema +from dlt.common.schema.typing import ( + LOADS_TABLE_NAME, + STATE_TABLE_NAME, + VERSION_TABLE_NAME, + TStoredSchema, +) from dlt.common.configuration.resolve import resolve_configuration from dlt.destinations.impl.duckdb.configuration import DuckDbClientConfiguration from dlt.destinations.impl.duckdb.sql_client import DuckDbSqlClient @@ -47,12 +54,15 @@ def test_pipeline_with_dlt_update(test_storage: FileStorage) -> None: f".dlt/pipelines/{GITHUB_PIPELINE_NAME}/schemas/github.schema.json" ) ) - # print(github_schema["tables"][LOADS_TABLE_NAME]) assert github_schema["engine_version"] == 5 assert ( "schema_version_hash" not in github_schema["tables"][LOADS_TABLE_NAME]["columns"] ) + # check the dlt state table + assert { + "version_hash" not in github_schema["tables"][STATE_TABLE_NAME]["columns"] + } # check loads table without attaching to pipeline duckdb_cfg = resolve_configuration( DuckDbClientConfiguration(dataset_name=GITHUB_DATASET), @@ -64,6 +74,20 @@ def test_pipeline_with_dlt_update(test_storage: FileStorage) -> None: assert len(rows[0]) == 4 rows = client.execute_sql("SELECT * FROM issues") assert len(rows) == 20 + rows = client.execute_sql(f"SELECT * FROM {STATE_TABLE_NAME}") + # only 5 columns + 2 dlt columns + assert len(rows[0]) == 5 + 2 + # inspect old state + state_dict = json.loads( + test_storage.load(f".dlt/pipelines/{GITHUB_PIPELINE_NAME}/state.json") + ) + assert "_version_hash" not in state_dict + assert ( + state_dict["sources"]["github"]["resources"]["load_issues"]["incremental"][ + "created_at" + ]["last_value"] + == "2021-04-16T04:34:05Z" + ) # execute in current version venv = Venv.restore_current() @@ -77,6 +101,12 @@ def test_pipeline_with_dlt_update(test_storage: FileStorage) -> None: ) assert github_schema["engine_version"] == 8 assert "schema_version_hash" in github_schema["tables"][LOADS_TABLE_NAME]["columns"] + # load state + state_dict = json.loads( + test_storage.load(f".dlt/pipelines/{GITHUB_PIPELINE_NAME}/state.json") + ) + assert "_version_hash" in state_dict + with DuckDbSqlClient(GITHUB_DATASET, duckdb_cfg.credentials) as client: rows = client.execute_sql( f"SELECT * FROM {LOADS_TABLE_NAME} ORDER BY inserted_at" @@ -88,13 +118,29 @@ def test_pipeline_with_dlt_update(test_storage: FileStorage) -> None: assert rows[0][4] is None # hash of schema present in current load (2) assert rows[1][4] == github_schema["version_hash"] + # make sure all 100 records loaded (we do incremental load) rows = client.execute_sql("SELECT * FROM issues") assert len(rows) == 100 # two schema versions rows = client.execute_sql(f"SELECT * FROM {VERSION_TABLE_NAME}") assert len(rows) == 2 + rows = client.execute_sql(f"SELECT * FROM {STATE_TABLE_NAME} ORDER BY version") + # we have hash columns + assert len(rows[0]) == 6 + 2 + assert len(rows) == 2 + # none inserted after schema migration in load 1 + assert rows[0][7] is None + # hash of schema present in current load (2) + assert rows[1][7] == state_dict["_version_hash"] + # attach to existing pipeline pipeline = dlt.attach(GITHUB_PIPELINE_NAME, credentials=duckdb_cfg.credentials) + assert ( + pipeline.state["sources"]["github"]["resources"]["load_issues"]["incremental"][ + "created_at" + ]["last_value"] + == "2023-02-17T09:52:12Z" + ) pipeline = pipeline.drop() # print(pipeline.working_dir) assert pipeline.dataset_name == GITHUB_DATASET @@ -128,6 +174,11 @@ def test_load_package_with_dlt_update(test_storage: FileStorage) -> None: "../tests/pipeline/cases/github_pipeline/github_extract.py", "70" ) ) + print( + venv.run_script( + "../tests/pipeline/cases/github_pipeline/github_normalize.py", + ) + ) # switch to current version and make sure the load package loads and schema migrates venv = Venv.restore_current() print(venv.run_script("../tests/pipeline/cases/github_pipeline/github_load.py")) @@ -156,3 +207,54 @@ def test_load_package_with_dlt_update(test_storage: FileStorage) -> None: assert pipeline.default_schema.ENGINE_VERSION == 8 # schema version does not match `dlt.attach` does not update to the right schema by itself assert pipeline.default_schema.stored_version_hash != github_schema["version_hash"] + # state has hash + assert pipeline.state["_version_hash"] is not None + # but in db there's no hash - we loaded an old package with backward compatible schema + with pipeline.sql_client() as client: + rows = client.execute_sql(f"SELECT * FROM {STATE_TABLE_NAME}") + # no hash + assert len(rows[0]) == 5 + 2 + assert len(rows) == 1 + # this will extract state and update state schema + with pipeline.managed_state(extract_state=True): + pass + # this will sync schema to destination + pipeline.sync_schema() + # we have hash now + rows = client.execute_sql(f"SELECT * FROM {STATE_TABLE_NAME}") + assert len(rows[0]) == 6 + 2 + + +def test_normalize_package_with_dlt_update(test_storage: FileStorage) -> None: + shutil.copytree("tests/pipeline/cases/github_pipeline", TEST_STORAGE_ROOT, dirs_exist_ok=True) + + # execute in test storage + with set_working_dir(TEST_STORAGE_ROOT): + # store dlt data in test storage (like patch_home_dir) + with custom_environ({"DLT_DATA_DIR": get_dlt_data_dir()}): + # save database outside of pipeline dir + with custom_environ( + {"DESTINATION__DUCKDB__CREDENTIALS": "duckdb:///test_github_3.duckdb"} + ): + # create virtual env with (0.3.0) before the current schema upgrade + with Venv.create(tempfile.mkdtemp(), ["dlt[duckdb]==0.3.0"]) as venv: + venv._install_deps(venv.context, ["duckdb" + "==" + pkg_version("duckdb")]) + # extract only + print( + venv.run_script( + "../tests/pipeline/cases/github_pipeline/github_extract.py", "70" + ) + ) + # switch to current version and normalize existing extract package + # here we test possible switch in package format between storages + pipeline = dlt.attach(GITHUB_PIPELINE_NAME) + with pytest.raises(StorageMigrationError) as mig_ex: + pipeline.normalize() + assert mig_ex.value.from_version == "1.0.0" + + # delete all files in extracted folder + for file in pipeline._pipeline_storage.list_folder_files("normalize/extracted"): + pipeline._pipeline_storage.delete(file) + # now we can migrate the storage + pipeline.normalize() + assert pipeline._get_normalize_storage().version == "1.0.1" diff --git a/tests/pipeline/test_pipeline.py b/tests/pipeline/test_pipeline.py index 6fb3cd775d..ae8fef19bc 100644 --- a/tests/pipeline/test_pipeline.py +++ b/tests/pipeline/test_pipeline.py @@ -392,7 +392,7 @@ def test_restore_state_on_dummy() -> None: assert p.first_run is False # no effect p.sync_destination() - assert p.state["_state_version"] == 2 + assert p.state["_state_version"] == 1 # wipe out storage p._wipe_working_folder() @@ -400,7 +400,7 @@ def test_restore_state_on_dummy() -> None: assert p.first_run is True p.sync_destination() assert p.first_run is True - assert p.state["_state_version"] == 1 + assert p.state["_state_version"] == 0 def test_first_run_flag() -> None: @@ -417,7 +417,7 @@ def test_first_run_flag() -> None: # attach again p = dlt.attach(pipeline_name=pipeline_name) assert p.first_run is True - assert len(p.list_extracted_resources()) > 0 + assert len(p.list_extracted_load_packages()) > 0 p.normalize() assert len(p.list_normalized_load_packages()) > 0 assert p.first_run is True @@ -571,7 +571,7 @@ def test_run_with_table_name_exceeding_path_length() -> None: # we must fix that with pytest.raises(PipelineStepFailed) as sf_ex: - p.extract([1, 2, 3], table_name="TABLE_" + "a" * 230) + p.extract([1, 2, 3], table_name="TABLE_" + "a" * 267) assert isinstance(sf_ex.value.__context__, OSError) @@ -1303,6 +1303,39 @@ def test_resource_state_name_not_normalized() -> None: assert state["sources"]["airtable_emojis"]["resources"] == {"🦚Peacock": {"🦚🦚🦚": "🦚"}} +def test_pipeline_list_packages() -> None: + pipeline = dlt.pipeline(pipeline_name="emojis", destination="dummy") + pipeline.extract(airtable_emojis()) + load_ids = pipeline.list_extracted_load_packages() + assert len(load_ids) == 1 + # two new packages: for emojis schema and emojis_2 + pipeline.extract( + [airtable_emojis(), airtable_emojis(), airtable_emojis().clone(with_name="emojis_2")] + ) + load_ids = pipeline.list_extracted_load_packages() + assert len(load_ids) == 3 + extracted_package = pipeline.get_load_package_info(load_ids[0]) + assert extracted_package.state == "extracted" + # same load id continues till the end + pipeline.normalize() + load_ids_n = pipeline.list_normalized_load_packages() + assert load_ids == load_ids_n + normalized_package = pipeline.get_load_package_info(load_ids[0]) + # same number of new jobs + assert normalized_package.state == "normalized" + assert len(normalized_package.jobs["new_jobs"]) == len(extracted_package.jobs["new_jobs"]) + # load all 3 packages and fail all jobs in them + os.environ["FAIL_PROB"] = "1.0" + pipeline.load() + load_ids_l = pipeline.list_completed_load_packages() + assert load_ids == load_ids_l + loaded_package = pipeline.get_load_package_info(load_ids[0]) + assert len(loaded_package.jobs["failed_jobs"]) == len(extracted_package.jobs["new_jobs"]) + assert loaded_package.state == "loaded" + failed_jobs = pipeline.list_failed_jobs_in_package(load_ids[0]) + assert len(loaded_package.jobs["failed_jobs"]) == len(failed_jobs) + + def test_remove_pending_packages() -> None: pipeline = dlt.pipeline(pipeline_name="emojis", destination="dummy") pipeline.extract(airtable_emojis()) diff --git a/tests/pipeline/test_pipeline_state.py b/tests/pipeline/test_pipeline_state.py index 574d69dce5..b1f9b2a1ec 100644 --- a/tests/pipeline/test_pipeline_state.py +++ b/tests/pipeline/test_pipeline_state.py @@ -13,7 +13,7 @@ from dlt.pipeline.exceptions import PipelineStateEngineNoUpgradePathException, PipelineStepFailed from dlt.pipeline.pipeline import Pipeline -from dlt.pipeline.state_sync import migrate_state, STATE_ENGINE_VERSION +from dlt.pipeline.state_sync import generate_version_hash, migrate_state, STATE_ENGINE_VERSION from tests.utils import test_storage from tests.pipeline.utils import json_case_path, load_json_case @@ -484,6 +484,8 @@ def test_migrate_state(test_storage: FileStorage) -> None: ) assert state["_state_engine_version"] == STATE_ENGINE_VERSION assert "_local" in state + assert "_version_hash" in state + assert state["_version_hash"] == generate_version_hash(state) with pytest.raises(PipelineStateEngineNoUpgradePathException) as py_ex: state_v1 = load_json_case("state/state.v1") @@ -503,3 +505,6 @@ def test_migrate_state(test_storage: FileStorage) -> None: p = dlt.attach(pipeline_name="debug_pipeline", pipelines_dir=test_storage.storage_path) assert p.dataset_name == "debug_pipeline_data" assert p.default_schema_name == "example_source" + state = p.state + print(state) + assert state["_version_hash"] == generate_version_hash(state) diff --git a/tests/pipeline/test_schema_contracts.py b/tests/pipeline/test_schema_contracts.py index f585f5896c..bf1b4a0b40 100644 --- a/tests/pipeline/test_schema_contracts.py +++ b/tests/pipeline/test_schema_contracts.py @@ -174,7 +174,7 @@ def test_new_tables( ) assert table_counts.get("new_items", 0) == (10 if contract_setting in ["evolve"] else 0) # delete extracted files if left after exception - pipeline._get_normalize_storage().delete_extracted_files(pipeline.list_extracted_resources()) + pipeline.drop_pending_packages() # NOTE: arrow / pandas do not support variants and subtables so we must skip if item_format == "json": @@ -226,7 +226,7 @@ def test_new_columns( with raises_frozen_exception(contract_setting == "freeze"): run_resource(pipeline, items_with_new_column, full_settings, item_format, duplicates=2) # delete extracted files if left after exception - pipeline._get_normalize_storage().delete_extracted_files(pipeline.list_extracted_resources()) + pipeline.drop_pending_packages() if contract_setting == "evolve": assert NEW_COLUMN_NAME in pipeline.default_schema.tables["items"]["columns"]