Important changes to this project will be documented in this file.
We try to follow Keep a Changelog, and we use Semantic Versioning.
Tags: Added, Changed, Deprecated, Removed, Fixed, Security
- Function
jc69.rtmcmc
to perform mcmc sampling of r and t under JC69. Need to finish documentation.
- Functions to calculate the JC69 likelihood and posterior in a two-species alignment, when d (the molecular distance) is the parameter to be estimated, and when t, r (the divergence time and molecular rate, with d = 2rt) are the parameters to be estimated.