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How to index genome file for MethylDackel? #150

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harshraj1919 opened this issue Aug 28, 2023 · 1 comment

harshraj1919 commented Aug 28, 2023

I am running following script on my indexed and sorted bam file, but it is giving error on genome file. I indexed my genome file using BWA index.

MethylDackel extract -@ 20 --chunkSize 30000000 \ --methylKit Genome/Cow.fasta C10_BWA_sorted.bam.bai

Error message,

Couldn't load the index for Genome/Cow.fasta, will attempt to build it.
Couldn't build the index for Genome/Cow.fasta! File corrupted?

Note : The file is not corrupted, I already used this file for mapping successfully.

Could you please help me to solve the issue?. How to index genome file for MethylDackel

Thanks,
Harshraj

Loopy-fox commented Dec 21, 2023

Hi ,did your error solved ? I meet the same issue.

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