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test_seq_output.txt
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-----------------------------------------------------------------------
TFpredict
Identification and structural characterization of transcription factors
-----------------------------------------------------------------------
(version 1.3)
Copyright (C) 2012 Center for Bioinformatics Tuebingen (ZBIT),
University of Tuebingen, Florian Topf and Johannes Eichner.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under certain
conditions.
For details see: http://www.gnu.org/licenses/gpl-3.0.html
Third-party software used by this program:
WEKA. Copyright (C) 1998, 1999 Eibe Frank, Leonard Trigg, Mark Hall.
All rights reserved.
InterProScan. Copyright (C) 2011 Sarah Hunter, EMBL-EBI. All rights reserved.
Input FASTA file: test_seq.fasta
Output file: test_seq_output.txt
SABINE output file: not generated
TF/non-TF classifier: SVM linear kernel
Superclass classifier: SVM linear kernel
Fetching domains from InterProScan. This may take several minutes...
Processed Sequence1:
9 InterPro domain(s) found.
6 / 9 InterPro domain(s) are relevant for TF/Non-TF classification.
6 / 9 InterPro domain(s) are relevant for Superclass prediction.
0 / 9 InterPro domain(s) were identified as DNA-binding domain(s).
==========================================
Results report for sequence: Sequence1
==========================================
TF/Non-TF prediction:
-----------------------
Probability
TF 1.00
Non-TF 0.00
Superclass prediction:
-----------------------
Probability
Basic domain 0.00
Zinc finger 0.00
Helix-turn-helix 0.00
Beta scaffold 1.00
Other 0.00
DNA-binding domain could not be predicted.
Time elapsed: 94 seconds