diff --git a/Makefile b/Makefile
index 7034e16..bd6a283 100644
--- a/Makefile
+++ b/Makefile
@@ -116,8 +116,8 @@ install: manifests kustomize ## Install CRDs into the K8s cluster specified in ~
 .PHONY: generate-manifests
 generate-manifests: manifests kustomize ## Generate manifests e.g. CRD, RBAC etc.
 	mkdir -p manifests
-	$(KUSTOMIZE) build config/default > manifests/dragonfly-operator.yaml
-	$(KUSTOMIZE) build config/crd > manifests/crd.yaml
+	$(KUSTOMIZE) build config/default > manifests/operator/dragonfly-operator.yaml
+	$(KUSTOMIZE) build config/crd > manifests/crds/crd.yaml
 
 .PHONY: uninstall
 uninstall: manifests kustomize ## Uninstall CRDs from the K8s cluster specified in ~/.kube/config. Call with ignore-not-found=true to ignore resource not found errors during deletion.
diff --git a/README.md b/README.md
index 0ad74ba..466dfd3 100644
--- a/README.md
+++ b/README.md
@@ -25,7 +25,7 @@ Make sure to have your Kubernetes cluster up and running. Dragonfly Operator can
 
 ```sh
 # Install the CRD and Operator
-kubectl apply -f https://raw.githubusercontent.com/dragonflydb/dragonfly-operator/main/manifests/dragonfly-operator.yaml
+kubectl apply -f https://raw.githubusercontent.com/dragonflydb/dragonfly-operator/main/manifests/operator/dragonfly-operator.yaml
 ```
 
 By default, the operator will be installed in the `dragonfly-operator-system` namespace.
@@ -106,7 +106,7 @@ This will automatically delete all the resources (i.e pods and services) associa
 To uninstall the operator, you can run
 
 ```sh
-kubectl delete -f https://raw.githubusercontent.com/dragonflydb/dragonfly-operator/main/manifests/dragonfly-operator.yaml
+kubectl delete -f https://raw.githubusercontent.com/dragonflydb/dragonfly-operator/main/manifests/operator/dragonfly-operator.yaml
 ```
 
 ## License
diff --git a/manifests/crd.yaml b/manifests/crds/crd.yaml
similarity index 100%
rename from manifests/crd.yaml
rename to manifests/crds/crd.yaml
diff --git a/manifests/dragonfly-operator.yaml b/manifests/operator/dragonfly-operator.yaml
similarity index 100%
rename from manifests/dragonfly-operator.yaml
rename to manifests/operator/dragonfly-operator.yaml