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Add regions.json for cell segmentation #2

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benneely opened this issue Apr 28, 2019 · 0 comments
Open

Add regions.json for cell segmentation #2

benneely opened this issue Apr 28, 2019 · 0 comments

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@benneely
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ihc-analysis-pipeline expects a regions.json file to be present in mm_e16.5_20x_sox9_sftpc_acta2/light_color_corrected; however, there isn't one. If one tries to copy the regions.json file from the outer folder, this doesn't work because it's expecting a different format. This may already be done, but can't find in any documentation.

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