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ihc-analysis-pipeline expects a regions.json file to be present in mm_e16.5_20x_sox9_sftpc_acta2/light_color_corrected; however, there isn't one. If one tries to copy the regions.json file from the outer folder, this doesn't work because it's expecting a different format. This may already be done, but can't find in any documentation.
The text was updated successfully, but these errors were encountered:
ihc-analysis-pipeline expects a regions.json file to be present in
mm_e16.5_20x_sox9_sftpc_acta2/light_color_corrected
; however, there isn't one. If one tries to copy the regions.json file from the outer folder, this doesn't work because it's expecting a different format. This may already be done, but can't find in any documentation.The text was updated successfully, but these errors were encountered: