From 7f5b0fb8964d37fda0afc0d205ea29d95c85e0f1 Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Sun, 16 Jun 2024 14:50:39 +0200 Subject: [PATCH] Bump version number, update release notes --- CHANGELOG.md | 17 +++++++++++++++++ documentation/rtd_requirements.txt | 1 + version.txt | 2 +- 3 files changed, 19 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index f4eed1f392..bdd3bdb63d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,23 @@ ## v0.X Series +### v0.25.2 (2024-06-16) + +**Fixes** + +* Fixed a bug in PEtab import which led to incorrect gradients + *w.r.t. estimated initial values specified via the condition table* + **BREAKING CHANGE**: + `amici.petab.sbml_import.{import_model_sbml,import_model}` no longer supports + passing individual PEtab tables, but only the PEtab problem object. + This functionality was deprecated since v0.12.0 (2022-08-26). +* Fixes for numpy 2.0 compatibility + **NOTE**: As long as some amici dependencies don't support numpy 2.0 yet, + you may need to pin numpy to <2.0 in your requirements + (`pip install amici numpy<2.0`). + +**Full Changelog**: https://github.com/AMICI-dev/AMICI/compare/v0.25.1...v0.25.2 + ### v0.25.1 (2024-05-16) **Fixes** diff --git a/documentation/rtd_requirements.txt b/documentation/rtd_requirements.txt index 9b5cc9709b..06cf506666 100644 --- a/documentation/rtd_requirements.txt +++ b/documentation/rtd_requirements.txt @@ -23,3 +23,4 @@ git+https://github.com/readthedocs/readthedocs-sphinx-ext ipykernel -e git+https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab.git@master#subdirectory=src/python&egg=benchmark_models_petab -e python/sdist/ +numpy<2.0 diff --git a/version.txt b/version.txt index af2dabf3ff..166c9e29b7 100644 --- a/version.txt +++ b/version.txt @@ -1 +1 @@ -0.25.1 +0.25.2