From 709bb72b1f9041eb145cc7f663780ef08bee8b51 Mon Sep 17 00:00:00 2001
From: qdread <qread@sesync.org>
Date: Sat, 24 Apr 2021 19:39:42 -0400
Subject: [PATCH] Built pkgdown site

---
 docs/404.html                                 |   8 +-
 docs/articles/index.html                      |   8 +-
 docs/articles/rslurm.html                     |  17 ++--
 docs/authors.html                             |  56 ++++++++++++-
 docs/index.html                               |  21 +++--
 docs/news/index.html                          |  79 +++++++++++-------
 docs/pkgdown.yml                              |   2 +-
 docs/reference/cancel_slurm.html              |  48 +++++------
 docs/reference/cleanup_files.html             |  62 +++++++-------
 docs/reference/get_job_status.html            |  49 ++++++-----
 docs/reference/get_slurm_out.html             |  52 ++++++------
 docs/reference/index.html                     |   8 +-
 docs/reference/local_slurm_array.html         |  23 ++---
 .../print_job_status-deprecated.html          |  12 +--
 docs/reference/rslurm-deprecated.html         |  53 ++++++------
 docs/reference/rslurm-package.html            |  46 +++++-----
 docs/reference/slurm_apply.html               |   8 +-
 docs/reference/slurm_call.html                |  36 ++++----
 docs/reference/slurm_job.html                 |   8 +-
 docs/reference/slurm_map.html                 |   8 +-
 vignettes/_rslurm_test_apply/f.RDS            | Bin 1331 -> 1326 bytes
 vignettes/_rslurm_test_apply/more_args.RDS    | Bin 46 -> 44 bytes
 vignettes/_rslurm_test_apply/params.RDS       | Bin 213 -> 212 bytes
 vignettes/_rslurm_test_call/f.RDS             | Bin 1331 -> 1326 bytes
 vignettes/_rslurm_test_call/params.RDS        | Bin 98 -> 96 bytes
 25 files changed, 340 insertions(+), 264 deletions(-)

diff --git a/docs/404.html b/docs/404.html
index 577f527..e6c44d5 100644
--- a/docs/404.html
+++ b/docs/404.html
@@ -73,7 +73,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="http://cyberhelp.sesync.org/rslurm//index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -81,7 +81,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -98,7 +98,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -134,7 +134,7 @@ <h2 data-toc-skip>Contents</h2>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/articles/index.html b/docs/articles/index.html
index 0ab843f..8282ab8 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -73,7 +73,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -81,7 +81,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -98,7 +98,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -133,7 +133,7 @@ <h3>All vignettes</h3>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/articles/rslurm.html b/docs/articles/rslurm.html
index 73e2ee0..8733f05 100644
--- a/docs/articles/rslurm.html
+++ b/docs/articles/rslurm.html
@@ -32,7 +32,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -40,7 +40,7 @@
       <ul class="nav navbar-nav">
 <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -57,7 +57,7 @@
 <ul class="nav navbar-nav navbar-right">
 <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -71,8 +71,7 @@
 
       
 
-      </header><script src="rslurm_files/accessible-code-block-0.0.1/empty-anchor.js"></script><link href="rslurm_files/anchor-sections-1.0/anchor-sections.css" rel="stylesheet">
-<script src="rslurm_files/anchor-sections-1.0/anchor-sections.js"></script><div class="row">
+      </header><script src="rslurm_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row">
   <div class="col-md-9 contents">
     <div class="page-header toc-ignore">
       <h1 data-toc-skip>Parallelize R code on a Slurm cluster</h1>
@@ -129,9 +128,9 @@ <h2 class="hasAnchor">
 <div class="sourceCode" id="cb6"><pre class="downlit">
 <span class="fu"><a href="https://rdrr.io/r/base/list.files.html">list.files</a></span><span class="op">(</span><span class="st">'_rslurm_test_apply'</span>, <span class="st">'results'</span><span class="op">)</span></pre></div>
 <pre><code>## [1] "results_0.RDS" "results_1.RDS"</code></pre>
-<p>The results from all the nodes can be read back into R with the <code><a href="../reference/get_slurm_out.html">get_slurm_out()</a></code> function.</p>
+<p>The results from all the nodes can be read back into R with the <code><a href="../reference/get_slurm_out.html">get_slurm_out()</a></code> function. In this example, <code>wait = FALSE</code>, but if you use the default argument <code>wait = TRUE</code>, execution will be paused until the Slurm job finishes running.</p>
 <div class="sourceCode" id="cb8"><pre class="downlit">
-<span class="va">res</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/get_slurm_out.html">get_slurm_out</a></span><span class="op">(</span><span class="va">sjob</span>, outtype <span class="op">=</span> <span class="st">'table'</span><span class="op">)</span>
+<span class="va">res</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/get_slurm_out.html">get_slurm_out</a></span><span class="op">(</span><span class="va">sjob</span>, outtype <span class="op">=</span> <span class="st">'table'</span>, wait <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span>
 <span class="fu"><a href="https://rdrr.io/r/utils/head.html">head</a></span><span class="op">(</span><span class="va">res</span>, <span class="fl">3</span><span class="op">)</span></pre></div>
 <pre><code>##       s_mu       s_sd
 ## 1 1.000137 0.09995552
@@ -140,7 +139,7 @@ <h2 class="hasAnchor">
 <p>The utility function <code>print_job_status</code> displays the status of a submitted job (i.e. in queue, running or completed), and <code>cancel_slurm</code> will remove a job from the queue, aborting its execution if necessary. These functions are R wrappers for the Slurm command line functions <code>squeue</code> and <code>scancel</code>, respectively.</p>
 <p>When <code>outtype = 'table'</code>, the outputs from each function evaluation are row-bound into a single data frame; this is an appropriate format when the function returns a simple vector. The default <code>outtype = 'raw'</code> combines the outputs into a list and can thus handle arbitrarily complex return objects.</p>
 <div class="sourceCode" id="cb10"><pre class="downlit">
-<span class="va">res_raw</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/get_slurm_out.html">get_slurm_out</a></span><span class="op">(</span><span class="va">sjob</span>, outtype <span class="op">=</span> <span class="st">'raw'</span><span class="op">)</span>
+<span class="va">res_raw</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/get_slurm_out.html">get_slurm_out</a></span><span class="op">(</span><span class="va">sjob</span>, outtype <span class="op">=</span> <span class="st">'raw'</span>, wait <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span>
 <span class="va">res_raw</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">3</span><span class="op">]</span></pre></div>
 <pre><code>## [[1]]
 ##       s_mu       s_sd 
@@ -238,7 +237,7 @@ <h2 class="hasAnchor">
 
 
       <footer><div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/authors.html b/docs/authors.html
index ee7d4d5..314756d 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -73,7 +73,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -81,7 +81,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -98,7 +98,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -119,6 +119,54 @@ <h1>Authors</h1>
     </div>
 
     <ul class="list-unstyled">
+      <li>
+        <p><strong>Philippe Marchand</strong>. Author. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Ian Carroll</strong>. Author. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Mike Smorul</strong>. Author. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Rachael Blake</strong>. Author. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Quentin Read</strong>. Author, maintainer. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Dayne Filer</strong>. Contributor. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Ben Fasoli</strong>. Contributor. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Pol van Rijn</strong>. Contributor. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Sebastian Schubert</strong>. Contributor. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Rob Gilmore</strong>. Contributor. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Christopher Barrington</strong>. Contributor. 
+        </p>
+      </li>
+      <li>
+        <p><strong>Se Jong Cho</strong>. Artist. 
+        </p>
+      </li>
     </ul>
 
   </div>
@@ -129,7 +177,7 @@ <h1>Authors</h1>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/index.html b/docs/index.html
index 868eb3f..01dcc35 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -34,7 +34,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -42,7 +42,7 @@
       <ul class="nav navbar-nav">
 <li>
   <a href="index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -59,7 +59,7 @@
 <ul class="nav navbar-nav navbar-right">
 <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -81,7 +81,7 @@
 <div class="page-header"><h1 class="hasAnchor">
 <a href="#rslurm-submit-r-code-to-a-slurm-cluster" class="anchor"></a>rslurm: submit R code to a Slurm cluster</h1></div>
 <!-- badges: start -->
-<p><a href="https://CRAN.R-project.org/web/checks/check_results_rslurm.html"><img src="https://cranchecks.info/badges/worst/rslurm" alt="cran checks"></a> <a href="https://CRAN.R-project.org/package=rslurm"><img src="https://cranlogs.r-pkg.org/badges/rslurm" alt="rstudio mirror downloads"></a> <a href="https://travis-ci.org/SESYNC-ci/rslurm"><img src="https://travis-ci.org/SESYNC-ci/rslurm.svg?branch=master" alt="Build Status"></a> <a href="https://www.repostatus.org/#active"><img src="https://www.repostatus.org/badges/latest/active.svg" alt="Project Status: Active – The project has reached a stable, usable state and is being actively developed."></a> <a href="https://CRAN.R-project.org/package=rslurm"><img src="https://www.r-pkg.org/badges/version/rslurm" alt="CRAN status"></a> <!-- badges: end --></p>
+<p><a href="https://CRAN.R-project.org/web/checks/check_results_rslurm.html"><img src="https://cranchecks.info/badges/worst/rslurm" alt="cran checks"></a> <a href="https://CRAN.R-project.org/package=rslurm"><img src="https://cranlogs.r-pkg.org/badges/rslurm" alt="rstudio mirror downloads"></a> <a href="https://github.com/SESYNC-ci/rslurm/actions"><img src="https://github.com/SESYNC-ci/rslurm/workflows/R-CMD-check/badge.svg" alt="R build status"></a> <a href="https://www.repostatus.org/#active"><img src="https://www.repostatus.org/badges/latest/active.svg" alt="Project Status: Active – The project has reached a stable, usable state and is being actively developed."></a> <a href="https://CRAN.R-project.org/package=rslurm"><img src="https://www.r-pkg.org/badges/version/rslurm" alt="CRAN status"></a> <!-- badges: end --></p>
 <div id="about" class="section level3">
 <h3 class="hasAnchor">
 <a href="#about" class="anchor"></a>About</h3>
@@ -147,6 +147,17 @@ <h2>License</h2>
 <ul class="list-unstyled">
 <li><a href="https://www.r-project.org/Licenses/GPL-3">GPL-3</a></li>
 </ul>
+</div>
+<div class="developers">
+<h2>Developers</h2>
+<ul class="list-unstyled">
+<li>Philippe Marchand <br><small class="roles"> Author </small>  </li>
+<li>Ian Carroll <br><small class="roles"> Author </small>  </li>
+<li>Mike Smorul <br><small class="roles"> Author </small>  </li>
+<li>Rachael Blake <br><small class="roles"> Author </small>  </li>
+<li>Quentin Read <br><small class="roles"> Author, maintainer </small>  </li>
+<li><a href="authors.html">All authors...</a></li>
+</ul>
 </div>
 
   </div>
@@ -154,7 +165,7 @@ <h2>License</h2>
 
 
       <footer><div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/news/index.html b/docs/news/index.html
index 20bb71b..09b4271 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -73,7 +73,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -81,7 +81,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -98,7 +98,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -119,18 +119,35 @@ <h1 data-toc-skip>Changelog <small></small></h1>
       <small>Source: <a href='https://github.com/SESYNC-ci/rslurm/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
     </div>
 
+    <div id="rslurm-060" class="section level1">
+<h1 class="page-header" data-toc-text="0.6.0">
+<a href="#rslurm-060" class="anchor"></a>rslurm 0.6.0<small> 2021-04-22 </small>
+</h1>
+<div id="new-features-and-fixes" class="section level2">
+<h2 class="hasAnchor">
+<a href="#new-features-and-fixes" class="anchor"></a>New features and fixes</h2>
+<ul>
+<li><p>New function <code><a href="../reference/slurm_map.html">slurm_map()</a></code> with similar syntax to <code><a href="https://rdrr.io/r/base/lapply.html">lapply()</a></code> (<a href="https://github.com/SESYNC-ci/rslurm/pull/48"><a href='https://github.com/SESYNC-ci/rslurm/issues/48'>#48</a></a>).</p></li>
+<li><p>Better handling of additional arguments to <code>f</code> in <code><a href="../reference/slurm_apply.html">slurm_apply()</a></code>, and of how R objects are made available to the Slurm jobs (<a href="https://github.com/SESYNC-ci/rslurm/pull/48"><a href='https://github.com/SESYNC-ci/rslurm/issues/48'>#48</a></a>).</p></li>
+<li><p>Slurm jobID added to <code>slurm_job</code> objects (<a href="https://github.com/SESYNC-ci/rslurm/pull/55"><a href='https://github.com/SESYNC-ci/rslurm/issues/55'>#55</a></a>).</p></li>
+<li><p><code>processes_per_node</code> argument added to support hyperthreading (<a href="https://github.com/SESYNC-ci/rslurm/pull/57"><a href='https://github.com/SESYNC-ci/rslurm/issues/57'>#57</a></a>).</p></li>
+<li><p><code>get_slurm_out())</code> is now compatible with partitions that cannot accept interactive jobs and with newer releases of Slurm, though there is a potential incompatibility with versions of Slurm older than 16.05.0, which was released on May 2016 (<a href="https://github.com/SESYNC-ci/rslurm/pull/65"><a href='https://github.com/SESYNC-ci/rslurm/issues/65'>#65</a></a>).</p></li>
+<li><p>Miscellaneous minor bug fixes (<a href="https://github.com/SESYNC-ci/rslurm/pull/49"><a href='https://github.com/SESYNC-ci/rslurm/issues/49'>#49</a></a>, <a href="https://github.com/SESYNC-ci/rslurm/pull/51"><a href='https://github.com/SESYNC-ci/rslurm/issues/51'>#51</a></a>, <a href="https://github.com/SESYNC-ci/rslurm/issues/53"><a href='https://github.com/SESYNC-ci/rslurm/issues/53'>#53</a></a>).</p></li>
+</ul>
+</div>
+</div>
     <div id="rslurm-050" class="section level1">
 <h1 class="page-header" data-toc-text="0.5.0">
 <a href="#rslurm-050" class="anchor"></a>rslurm 0.5.0<small> 2019-11-15 </small>
 </h1>
-<div id="new-features-and-fixes" class="section level3">
+<div id="new-features-and-fixes-1" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-1" class="anchor"></a>New features and fixes</h3>
 <ul>
-<li><p>Improved status with <code>get_job_status</code>, deprecating <code>print_job_status</code> (<a href="https://github.com/sesync-ci/rslurm/pull/37"><a href='https://github.com/SESYNC-ci/rslurm/issues/37'>#37</a></a>).</p></li>
-<li><p>Use <code>mclapply</code> within <code>get_slurm_out</code> to gather results (<a href="https://github.com/sesync-ci/rslurm/pull/30"><a href='https://github.com/SESYNC-ci/rslurm/issues/30'>#30</a></a>).</p></li>
-<li><p>Allow user to provide custom .R and .sh templates (<a href="https://github.com/sesync-ci/rslurm/pull/47"><a href='https://github.com/SESYNC-ci/rslurm/issues/47'>#47</a></a>).</p></li>
-<li><p>Allow user to specify path to <code>Rscript</code> (<a href="https://github.com/sesync-ci/rslurm/pull/45"><a href='https://github.com/SESYNC-ci/rslurm/issues/45'>#45</a></a>) and number of CPUS per task (<a href="https://github.com/sesync-ci/rslurm/pull/36"><a href='https://github.com/SESYNC-ci/rslurm/issues/36'>#36</a></a>).</p></li>
+<li><p>Improved status with <code>get_job_status</code>, deprecating <code>print_job_status</code> (<a href="https://github.com/SESYNC-ci/rslurm/pull/37"><a href='https://github.com/SESYNC-ci/rslurm/issues/37'>#37</a></a>).</p></li>
+<li><p>Use <code>mclapply</code> within <code>get_slurm_out</code> to gather results (<a href="https://github.com/SESYNC-ci/rslurm/pull/30"><a href='https://github.com/SESYNC-ci/rslurm/issues/30'>#30</a></a>).</p></li>
+<li><p>Allow user to provide custom .R and .sh templates (<a href="https://github.com/SESYNC-ci/rslurm/pull/47"><a href='https://github.com/SESYNC-ci/rslurm/issues/47'>#47</a></a>).</p></li>
+<li><p>Allow user to specify path to <code>Rscript</code> (<a href="https://github.com/sesync-ci/rslurm/pull/45"><a href='https://github.com/SESYNC-ci/rslurm/issues/45'>#45</a></a>) and number of CPUS per task (<a href="https://github.com/SESYNC-ci/rslurm/pull/36"><a href='https://github.com/SESYNC-ci/rslurm/issues/36'>#36</a></a>).</p></li>
 <li><p>Allow user to disable core prescheduling if tasks have high variance in completion time (<a href="https://github.com/SESYNC-ci/rslurm/commit/816b40e">816b40e</a>).</p></li>
 </ul>
 </div>
@@ -139,9 +156,9 @@ <h3 class="hasAnchor">
 <h1 class="page-header" data-toc-text="0.4.0">
 <a href="#rslurm-040" class="anchor"></a>rslurm 0.4.0<small> 2017-10-19 </small>
 </h1>
-<div id="new-features-and-fixes-1" class="section level3">
+<div id="new-features-and-fixes-2" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-1" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-2" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li><p>Pass (serialized) functions to Slurm nodes without stringifying.</p></li>
 <li><p>Save <code>add_objects</code> objects from correct environment.</p></li>
@@ -163,9 +180,9 @@ <h3 class="hasAnchor">
 <h1 class="page-header" data-toc-text="0.3.3">
 <a href="#rslurm-033" class="anchor"></a>rslurm 0.3.3<small> 2017-04-09 </small>
 </h1>
-<div id="new-features-and-fixes-2" class="section level3">
+<div id="new-features-and-fixes-3" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-2" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-3" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li>Create README from R/slurm.R.</li>
 </ul>
@@ -175,13 +192,13 @@ <h3 class="hasAnchor">
 <h1 class="page-header" data-toc-text="0.3.2">
 <a href="#rslurm-032" class="anchor"></a>rslurm 0.3.2<small> 2017-04-07 </small>
 </h1>
-<div id="new-features-and-fixes-3" class="section level3">
+<div id="new-features-and-fixes-4" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-3" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-4" class="anchor"></a>New features and fixes</h3>
 <ul>
-<li><p><code>wait</code> argument adds option to <code>slurm_apply</code> and <code>slurm_call</code> to block the calling script until the submitted job completes. This option can be used to allow immediate processing of a submitted job’s output (<a href="https://github.com/sesync-ci/rslurm/pull/2"><a href='https://github.com/SESYNC-ci/rslurm/issues/2'>#2</a></a>).</p></li>
-<li><p>Use “.RDS” file extension, rather than “.RData”, for serialized objects (<a href="https://github.com/sesync-ci/rslurm/pull/4"><a href='https://github.com/SESYNC-ci/rslurm/issues/4'>#4</a></a>).</p></li>
-<li><p>Minor bug fixes (<a href="https://github.com/sesync-ci/rslurm/pull/4"><a href='https://github.com/SESYNC-ci/rslurm/issues/4'>#4</a></a>).</p></li>
+<li><p><code>wait</code> argument adds option to <code>slurm_apply</code> and <code>slurm_call</code> to block the calling script until the submitted job completes. This option can be used to allow immediate processing of a submitted job’s output (<a href="https://github.com/SESYNC-ci/rslurm/pull/2"><a href='https://github.com/SESYNC-ci/rslurm/issues/2'>#2</a></a>).</p></li>
+<li><p>Use “.RDS” file extension, rather than “.RData”, for serialized objects (<a href="https://github.com/SESYNC-ci/rslurm/pull/4"><a href='https://github.com/SESYNC-ci/rslurm/issues/4'>#4</a></a>).</p></li>
+<li><p>Minor bug fixes (<a href="https://github.com/SESYNC-ci/rslurm/pull/4"><a href='https://github.com/SESYNC-ci/rslurm/issues/4'>#4</a></a>).</p></li>
 </ul>
 </div>
 </div>
@@ -189,9 +206,9 @@ <h3 class="hasAnchor">
 <h1 class="page-header" data-toc-text="0.3.1">
 <a href="#rslurm-031" class="anchor"></a>rslurm 0.3.1<small> 2016-06-18 </small>
 </h1>
-<div id="new-features-and-fixes-4" class="section level3">
+<div id="new-features-and-fixes-5" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-4" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-5" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li>Minor bug fix: specify full path of ‘Rscript’ when running batch scripts.</li>
 </ul>
@@ -202,9 +219,9 @@ <h1 class="page-header" data-toc-text="0.3.0">
 <a href="#rslurm-030" class="anchor"></a>rslurm 0.3.0<small> 2016-05-28 </small>
 </h1>
 <p><em>First version on CRAN</em></p>
-<div id="new-features-and-fixes-5" class="section level3">
+<div id="new-features-and-fixes-6" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-5" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-6" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li><p>Added a <code>submit</code> argument to <code>slurm_apply</code> and <code>slurm_call</code>. If <code>submit = FALSE</code>, the submission scripts are created but not run. This is useful if the files need to be transferred from a local machine to the cluster and run at a later time.</p></li>
 <li><p>Added new optional arguments to <code>slurm_apply</code> and <code>slurm_call</code>, allowing users to give informative names to SLURM jobs (<code>jobname</code>) and set any options understood by <code>sbatch</code> (<code>slurm_options</code>).</p></li>
@@ -220,9 +237,9 @@ <h1 class="page-header" data-toc-text="0.2.0">
 <a href="#rslurm-020" class="anchor"></a>rslurm 0.2.0<small> Unreleased </small>
 </h1>
 <p><em>2015-11-23</em></p>
-<div id="new-features-and-fixes-6" class="section level3">
+<div id="new-features-and-fixes-7" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-6" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-7" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li><p>Changed the <code>slurm_apply</code> function to use <code><a href="https://rdrr.io/r/parallel/mclapply.html">parallel::mcMap</a></code> instead of <code>mcmapply</code>, which fixes a bug where list outputs (i.e. each function call returns a list) would be collapsed in a single list (rather than returned as a list of lists).</p></li>
 <li><p>Changed the interface so that the output type (table or raw) is now an argument of <code>get_slurm_out</code> rather than of <code>slurm_apply</code>, and defaults to <code>raw</code>.</p></li>
@@ -235,9 +252,9 @@ <h1 class="page-header" data-toc-text="0.1.3">
 <a href="#rslurm-013" class="anchor"></a>rslurm 0.1.3<small> Unreleased </small>
 </h1>
 <p><em>2015-07-13</em></p>
-<div id="new-features-and-fixes-7" class="section level3">
+<div id="new-features-and-fixes-8" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-7" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-8" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li><p>Added the <code>slurm_call</code> function, which submits a single function evaluation on the cluster, with syntax similar to the base function <code>do.call</code>.</p></li>
 <li><p><code>get_slurm_out</code> can now process the output even if some files are missing, in which case it issues a warning.</p></li>
@@ -249,9 +266,9 @@ <h1 class="page-header" data-toc-text="0.1.2">
 <a href="#rslurm-012" class="anchor"></a>rslurm 0.1.2<small> Unreleased </small>
 </h1>
 <p><em>2015-06-29</em></p>
-<div id="new-features-and-fixes-8" class="section level3">
+<div id="new-features-and-fixes-9" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-8" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-9" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li>Added the optional argument <code>pkgs</code> to <code>slurm_apply</code>, indicating which packages should be loaded on each node (by default, all packages currently attached to the user’s R session).</li>
 </ul>
@@ -262,9 +279,9 @@ <h1 class="page-header" data-toc-text="0.1.1">
 <a href="#rslurm-011" class="anchor"></a>rslurm 0.1.1<small> Unreleased </small>
 </h1>
 <p><em>2015-06-24</em></p>
-<div id="new-features-and-fixes-9" class="section level3">
+<div id="new-features-and-fixes-10" class="section level3">
 <h3 class="hasAnchor">
-<a href="#new-features-and-fixes-9" class="anchor"></a>New features and fixes</h3>
+<a href="#new-features-and-fixes-10" class="anchor"></a>New features and fixes</h3>
 <ul>
 <li><p>Added the optional argument <code>output</code> to <code>slurm_apply</code>, which can take the value <code>table</code> (each function evaluation returns a row, output is a data frame) or <code>raw</code> (each function evaluation returns an arbitrary R object, output is a list).</p></li>
 <li><p>Fixed a bug in the chunk size calculation for <code>slurm_apply</code>.</p></li>
@@ -297,7 +314,7 @@ <h2 data-toc-skip>Contents</h2>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index bd1bf90..07b6f7e 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 1.6.1
 pkgdown_sha: ~
 articles:
   rslurm: rslurm.html
-last_built: 2020-10-23T01:31Z
+last_built: 2021-04-24T23:34Z
 urls:
   reference: http://cyberhelp.sesync.org/rslurm//reference
   article: http://cyberhelp.sesync.org/rslurm//articles
diff --git a/docs/reference/cancel_slurm.html b/docs/reference/cancel_slurm.html
index c6e35e8..365e5b5 100644
--- a/docs/reference/cancel_slurm.html
+++ b/docs/reference/cancel_slurm.html
@@ -10,23 +10,27 @@
 
 
 <!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
-<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
+<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
 
 
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
+
+<!-- bootstrap-toc -->
+<link rel="stylesheet" href="../bootstrap-toc.css">
+<script src="../bootstrap-toc.js"></script>
 
 <!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
 
 <!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
@@ -43,7 +47,6 @@
 (e.g. scripts) created by slurm_apply or 
 slurm_call. Use cleanup_files to remove those 
 files." />
-<meta name="twitter:card" content="summary" />
 
 
 
@@ -61,7 +64,7 @@
 
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-standard navbar-fixed-top" role="navigation">
@@ -75,7 +78,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -83,7 +86,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -99,8 +102,8 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/SESYNC-ci/rslurm">
-    <span class="fab fa fab fa-github fa-lg"></span>
+  <a href="https://github.com/SESYNC-ci/rslurm/">
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -130,7 +133,7 @@ <h1>Cancels a scheduled Slurm job</h1>
 files.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>cancel_slurm</span>(<span class='no'>slr_job</span>)</pre>
+    <pre class="usage"><span class='fu'>cancel_slurm</span><span class='op'>(</span><span class='va'>slr_job</span><span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -146,24 +149,21 @@ <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See a
     <div class='dont-index'><p><code><a href='cleanup_files.html'>cleanup_files</a></code></p></div>
 
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      <li><a href="#see-also">See also</a></li>
-    </ul>
-
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
   </div>
 </div>
 
 
       <footer>
       <div class="copyright">
-  <p>Developed by Philippe Marchand, Ian Carroll, Quentin Read.</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/cleanup_files.html b/docs/reference/cleanup_files.html
index e71f9fd..e56725a 100644
--- a/docs/reference/cleanup_files.html
+++ b/docs/reference/cleanup_files.html
@@ -10,23 +10,27 @@
 
 
 <!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
-<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
+<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
 
 
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
+
+<!-- bootstrap-toc -->
+<link rel="stylesheet" href="../bootstrap-toc.css">
+<script src="../bootstrap-toc.js"></script>
 
 <!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
 
 <!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
@@ -43,7 +47,6 @@
 slurm_call, as well as outputs from the cluster. These files
 should be located in the _rslurm_[jobname] folder of the current
 working directory." />
-<meta name="twitter:card" content="summary" />
 
 
 
@@ -61,7 +64,7 @@
 
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-standard navbar-fixed-top" role="navigation">
@@ -75,7 +78,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -83,7 +86,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -99,8 +102,8 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/SESYNC-ci/rslurm">
-    <span class="fab fa fab fa-github fa-lg"></span>
+  <a href="https://github.com/SESYNC-ci/rslurm/">
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -130,7 +133,7 @@ <h1>Deletes temporary files associated with a Slurm job</h1>
 working directory.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>cleanup_files</span>(<span class='no'>slr_job</span>, <span class='kw'>wait</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</pre>
+    <pre class="usage"><span class='fu'>cleanup_files</span><span class='op'>(</span><span class='va'>slr_job</span>, wait <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -150,32 +153,29 @@ <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See a
     <div class='dont-index'><p><code><a href='slurm_apply.html'>slurm_apply</a></code>, <code><a href='slurm_call.html'>slurm_call</a></code></p></div>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='kw'>if</span> (<span class='fl'>FALSE</span>) {
-<span class='no'>sjob</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='slurm_apply.html'>slurm_apply</a></span>(<span class='no'>func</span>, <span class='no'>pars</span>)
-<span class='fu'><a href='rslurm-deprecated.html'>print_job_status</a></span>(<span class='no'>sjob</span>) <span class='co'># Prints console/error output once job is completed.</span>
-<span class='no'>func_result</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='get_slurm_out.html'>get_slurm_out</a></span>(<span class='no'>sjob</span>, <span class='st'>"table"</span>) <span class='co'># Loads output data into R.</span>
-<span class='fu'>cleanup_files</span>(<span class='no'>sjob</span>)
-}</div></pre>
+    <pre class="examples"><div class='input'><span class='kw'>if</span> <span class='op'>(</span><span class='cn'>FALSE</span><span class='op'>)</span> <span class='op'>{</span>
+<span class='va'>sjob</span> <span class='op'>&lt;-</span> <span class='fu'><a href='slurm_apply.html'>slurm_apply</a></span><span class='op'>(</span><span class='va'>func</span>, <span class='va'>pars</span><span class='op'>)</span>
+<span class='fu'><a href='print_job_status.html'>print_job_status</a></span><span class='op'>(</span><span class='va'>sjob</span><span class='op'>)</span> <span class='co'># Prints console/error output once job is completed.</span>
+<span class='va'>func_result</span> <span class='op'>&lt;-</span> <span class='fu'><a href='get_slurm_out.html'>get_slurm_out</a></span><span class='op'>(</span><span class='va'>sjob</span>, <span class='st'>"table"</span><span class='op'>)</span> <span class='co'># Loads output data into R.</span>
+<span class='fu'>cleanup_files</span><span class='op'>(</span><span class='va'>sjob</span><span class='op'>)</span>
+<span class='op'>}</span>
+</div></pre>
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      <li><a href="#see-also">See also</a></li>
-      <li><a href="#examples">Examples</a></li>
-    </ul>
-
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
   </div>
 </div>
 
 
       <footer>
       <div class="copyright">
-  <p>Developed by Philippe Marchand, Ian Carroll, Quentin Read.</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/get_job_status.html b/docs/reference/get_job_status.html
index 0544c87..db8f8d5 100644
--- a/docs/reference/get_job_status.html
+++ b/docs/reference/get_job_status.html
@@ -10,23 +10,27 @@
 
 
 <!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
-<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
+<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
 
 
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
+
+<!-- bootstrap-toc -->
+<link rel="stylesheet" href="../bootstrap-toc.css">
+<script src="../bootstrap-toc.js"></script>
 
 <!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
 
 <!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
@@ -40,7 +44,6 @@
 <meta property="og:title" content="Get the status of a Slurm job — get_job_status" />
 <meta property="og:description" content="This function returns the completion status of a Slurm job, its queue status 
 if any and log outputs." />
-<meta name="twitter:card" content="summary" />
 
 
 
@@ -58,7 +61,7 @@
 
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-standard navbar-fixed-top" role="navigation">
@@ -72,7 +75,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -80,7 +83,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -96,8 +99,8 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/SESYNC-ci/rslurm">
-    <span class="fab fa fab fa-github fa-lg"></span>
+  <a href="https://github.com/SESYNC-ci/rslurm/">
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -124,7 +127,7 @@ <h1>Get the status of a Slurm job</h1>
 if any and log outputs.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>get_job_status</span>(<span class='no'>slr_job</span>)</pre>
+    <pre class="usage"><span class='fu'>get_job_status</span><span class='op'>(</span><span class='va'>slr_job</span><span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -150,25 +153,21 @@ <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details
 job is running.</p>
 
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      <li><a href="#value">Value</a></li>
-      <li><a href="#details">Details</a></li>
-    </ul>
-
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
   </div>
 </div>
 
 
       <footer>
       <div class="copyright">
-  <p>Developed by Philippe Marchand, Ian Carroll, Quentin Read.</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/get_slurm_out.html b/docs/reference/get_slurm_out.html
index 841d480..918fdd3 100644
--- a/docs/reference/get_slurm_out.html
+++ b/docs/reference/get_slurm_out.html
@@ -10,23 +10,27 @@
 
 
 <!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
-<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
+<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
 
 
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
+
+<!-- bootstrap-toc -->
+<link rel="stylesheet" href="../bootstrap-toc.css">
+<script src="../bootstrap-toc.js"></script>
 
 <!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
 
 <!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
@@ -44,7 +48,6 @@
 record any messages (including warnings or errors) output to the R console
 during the computation; these can be consulted by invoking 
 print_job_status." />
-<meta name="twitter:card" content="summary" />
 
 
 
@@ -62,7 +65,7 @@
 
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-standard navbar-fixed-top" role="navigation">
@@ -76,7 +79,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -84,7 +87,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -100,8 +103,8 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/SESYNC-ci/rslurm">
-    <span class="fab fa fab fa-github fa-lg"></span>
+  <a href="https://github.com/SESYNC-ci/rslurm/">
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -129,10 +132,10 @@ <h1>Reads the output of a function calculated on the Slurm cluster</h1>
 (if "table" format selected) or list (if "raw" format selected). It doesn't 
 record any messages (including warnings or errors) output to the R console
 during the computation; these can be consulted by invoking 
-<code><a href='rslurm-deprecated.html'>print_job_status</a></code>.</p>
+<code><a href='print_job_status.html'>print_job_status</a></code>.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>get_slurm_out</span>(<span class='no'>slr_job</span>, <span class='kw'>outtype</span> <span class='kw'>=</span> <span class='st'>"raw"</span>, <span class='kw'>wait</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>ncores</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre>
+    <pre class="usage"><span class='fu'>get_slurm_out</span><span class='op'>(</span><span class='va'>slr_job</span>, outtype <span class='op'>=</span> <span class='st'>"raw"</span>, wait <span class='op'>=</span> <span class='cn'>TRUE</span>, ncores <span class='op'>=</span> <span class='cn'>NULL</span><span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -175,26 +178,21 @@ <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See a
     <div class='dont-index'><p><code><a href='slurm_apply.html'>slurm_apply</a></code>, <code><a href='slurm_call.html'>slurm_call</a></code></p></div>
 
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#arguments">Arguments</a></li>
-      <li><a href="#value">Value</a></li>
-      <li><a href="#details">Details</a></li>
-      <li><a href="#see-also">See also</a></li>
-    </ul>
-
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
   </div>
 </div>
 
 
       <footer>
       <div class="copyright">
-  <p>Developed by Philippe Marchand, Ian Carroll, Quentin Read.</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 2c33645..e308b57 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -73,7 +73,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -81,7 +81,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -98,7 +98,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -239,7 +239,7 @@ <h2 data-toc-skip>Contents</h2>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/reference/local_slurm_array.html b/docs/reference/local_slurm_array.html
index 2a565d0..9381f05 100644
--- a/docs/reference/local_slurm_array.html
+++ b/docs/reference/local_slurm_array.html
@@ -75,7 +75,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -83,7 +83,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -100,7 +100,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -127,7 +127,7 @@ <h1>Execute a Slurm job locally</h1>
 Slurm cluster</p>
     </div>
 
-    <pre class="usage"><span class='fu'>local_slurm_array</span>(<span class='no'>slr_job</span>, <span class='kw'>rscript_path</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre>
+    <pre class="usage"><span class='fu'>local_slurm_array</span><span class='op'>(</span><span class='va'>slr_job</span>, rscript_path <span class='op'>=</span> <span class='cn'>NULL</span><span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -153,12 +153,13 @@ <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details
 to the Slurm cluster.</p>
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='kw'>if</span> (<span class='fl'>FALSE</span>) {
-<span class='no'>sjob</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='slurm_apply.html'>slurm_apply</a></span>(<span class='no'>func</span>, <span class='no'>pars</span>, <span class='kw'>submit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)
-<span class='fu'>local_slurm_array</span>(<span class='no'>sjob</span>)
-<span class='no'>func_result</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='get_slurm_out.html'>get_slurm_out</a></span>(<span class='no'>sjob</span>, <span class='st'>"table"</span>) <span class='co'># Loads output data into R.</span>
-<span class='fu'><a href='cleanup_files.html'>cleanup_files</a></span>(<span class='no'>sjob</span>)
-}</div></pre>
+    <pre class="examples"><div class='input'><span class='kw'>if</span> <span class='op'>(</span><span class='cn'>FALSE</span><span class='op'>)</span> <span class='op'>{</span>
+<span class='va'>sjob</span> <span class='op'>&lt;-</span> <span class='fu'><a href='slurm_apply.html'>slurm_apply</a></span><span class='op'>(</span><span class='va'>func</span>, <span class='va'>pars</span>, submit <span class='op'>=</span> <span class='cn'>FALSE</span><span class='op'>)</span>
+<span class='fu'>local_slurm_array</span><span class='op'>(</span><span class='va'>sjob</span><span class='op'>)</span>
+<span class='va'>func_result</span> <span class='op'>&lt;-</span> <span class='fu'><a href='get_slurm_out.html'>get_slurm_out</a></span><span class='op'>(</span><span class='va'>sjob</span>, <span class='st'>"table"</span><span class='op'>)</span> <span class='co'># Loads output data into R.</span>
+<span class='fu'><a href='cleanup_files.html'>cleanup_files</a></span><span class='op'>(</span><span class='va'>sjob</span><span class='op'>)</span>
+<span class='op'>}</span>
+</div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
     <nav id="toc" data-toggle="toc" class="sticky-top">
@@ -174,7 +175,7 @@ <h2 data-toc-skip>Contents</h2>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/print_job_status-deprecated.html b/docs/reference/print_job_status-deprecated.html
index de3a6eb..f45d98c 100644
--- a/docs/reference/print_job_status-deprecated.html
+++ b/docs/reference/print_job_status-deprecated.html
@@ -74,7 +74,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -82,7 +82,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -99,7 +99,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -125,7 +125,7 @@ <h1>Prints the status of a Slurm job and, if completed, its console/error output
     <p>Prints the status of a Slurm job and, if completed, its console/error output.</p>
     </div>
 
-    <pre class="usage"><span class='fu'><a href='rslurm-deprecated.html'>print_job_status</a></span>(<span class='no'>slr_job</span>)</pre>
+    <pre class="usage"><span class='fu'><a href='print_job_status.html'>print_job_status</a></span><span class='op'>(</span><span class='va'>slr_job</span><span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -147,7 +147,7 @@ <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details
 console and error output, if any, generated by each node.</p>
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
-    <div class='dont-index'><p><code><a href='rslurm-deprecated.html'>rslurm-deprecated</a></code></p></div>
+    <div class='dont-index'><p><code><a href='print_job_status.html'>rslurm-deprecated</a></code></p></div>
 
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
@@ -164,7 +164,7 @@ <h2 data-toc-skip>Contents</h2>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/rslurm-deprecated.html b/docs/reference/rslurm-deprecated.html
index 76c6e6c..f212ee3 100644
--- a/docs/reference/rslurm-deprecated.html
+++ b/docs/reference/rslurm-deprecated.html
@@ -6,27 +6,31 @@
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-<title>Deprecated functions in package <span class="pkg">rslurm</span>. — print_job_status • rslurm</title>
+<title>Deprecated functions in package rslurm. — print_job_status • rslurm</title>
 
 
 <!-- jquery -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
-<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
+<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/darkly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
 
 
-<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
+
+<!-- bootstrap-toc -->
+<link rel="stylesheet" href="../bootstrap-toc.css">
+<script src="../bootstrap-toc.js"></script>
 
 <!-- Font Awesome icons -->
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/all.min.css" integrity="sha256-nAmazAk6vS34Xqo0BSrTb+abbtFlgsFK7NKSi6o7Y78=" crossorigin="anonymous" />
-<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.7.1/css/v4-shims.min.css" integrity="sha256-6qHlizsOWFskGlwVOKuns+D1nB6ssZrHQrNj1wGplHc=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
 
 <!-- headroom.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/headroom.min.js" integrity="sha256-DJFC1kqIhelURkuza0AvYal5RxMtpzLjFhsnVIeuk+U=" crossorigin="anonymous"></script>
-<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
@@ -37,12 +41,11 @@
   <link href="../extra.css" rel="stylesheet">
   
 
-<meta property="og:title" content="Deprecated functions in package <span class="pkg">rslurm</span>. — print_job_status" />
+<meta property="og:title" content="Deprecated functions in package rslurm. — print_job_status" />
 <meta property="og:description" content="The functions listed below are deprecated and will be defunct in
   the near future. When possible, alternative functions with similar
   functionality are also mentioned. Help pages for deprecated functions are
   available at help(&quot;-deprecated&quot;)." />
-<meta name="twitter:card" content="summary" />
 
 
 
@@ -60,7 +63,7 @@
 
   </head>
 
-  <body>
+  <body data-spy="scroll" data-target="#toc">
     <div class="container template-reference-topic">
       <header>
       <div class="navbar navbar-standard navbar-fixed-top" role="navigation">
@@ -74,7 +77,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -82,7 +85,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -98,8 +101,8 @@
       </ul>
       <ul class="nav navbar-nav navbar-right">
         <li>
-  <a href="https://github.com/SESYNC-ci/rslurm">
-    <span class="fab fa fab fa-github fa-lg"></span>
+  <a href="https://github.com/SESYNC-ci/rslurm/">
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -125,10 +128,10 @@ <h1>Deprecated functions in package <span class="pkg">rslurm</span>.</h1>
     <p>The functions listed below are deprecated and will be defunct in
   the near future. When possible, alternative functions with similar
   functionality are also mentioned. Help pages for deprecated functions are
-  available at <code><a href='https://rdrr.io/r/utils/help.html'>help("-deprecated")</a></code>.</p>
+  available at <code>help("-deprecated")</code>.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>print_job_status</span>(<span class='no'>slr_job</span>)</pre>
+    <pre class="usage"><span class='fu'>print_job_status</span><span class='op'>(</span><span class='va'>slr_job</span><span class='op'>)</span></pre>
 
 
     <h2 class="hasAnchor" id="print-job-status"><a class="anchor" href="#print-job-status"></a><code>print_job_status</code></h2>
@@ -138,23 +141,21 @@ <h2 class="hasAnchor" id="print-job-status"><a class="anchor" href="#print-job-s
 <p>For <code>print_job_status</code>, use <code><a href='get_job_status.html'>get_job_status</a></code>.</p>
 
   </div>
-  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
-    <h2>Contents</h2>
-    <ul class="nav nav-pills nav-stacked">
-      <li><a href="#print-job-status"><code>print_job_status</code></a></li>
-    </ul>
-
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top">
+      <h2 data-toc-skip>Contents</h2>
+    </nav>
   </div>
 </div>
 
 
       <footer>
       <div class="copyright">
-  <p>Developed by Philippe Marchand, Ian Carroll, Quentin Read.</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/rslurm-package.html b/docs/reference/rslurm-package.html
index 7551779..a154973 100644
--- a/docs/reference/rslurm-package.html
+++ b/docs/reference/rslurm-package.html
@@ -6,7 +6,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-<title>Introduction to the <code>rslurm</code> Package — rslurm-package • rslurm</title>
+<title>Introduction to the rslurm Package — rslurm-package • rslurm</title>
 
 
 <!-- jquery -->
@@ -41,7 +41,7 @@
   <link href="../extra.css" rel="stylesheet">
   
 
-<meta property="og:title" content="Introduction to the <code>rslurm</code> Package — rslurm-package" />
+<meta property="og:title" content="Introduction to the rslurm Package — rslurm-package" />
 <meta property="og:description" content="Send long-running or parallel jobs to a Slurm workload manager (i.e. cluster)
 using the slurm_call, slurm_apply, or
 slurm_map functions." />
@@ -76,7 +76,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -84,7 +84,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -101,7 +101,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -149,7 +149,7 @@ <h2 class="hasAnchor" id="job-submission"><a class="anchor" href="#job-submissio
   package to parallelize computations across processors on a given node.</p>  
 <p>The output of <code>slurm_apply</code>, <code>slurm_map</code>, or <code>slurm_call</code> 
   is a <code>slurm_job</code> object that serves as an input to the other functions in the package: 
-  <code><a href='rslurm-deprecated.html'>print_job_status</a></code>, <code><a href='cancel_slurm.html'>cancel_slurm</a></code>, 
+  <code><a href='print_job_status.html'>print_job_status</a></code>, <code><a href='cancel_slurm.html'>cancel_slurm</a></code>, 
   <code><a href='get_slurm_out.html'>get_slurm_out</a></code> and <code><a href='cleanup_files.html'>cleanup_files</a></code>.</p>
     <h2 class="hasAnchor" id="function-specification"><a class="anchor" href="#function-specification"></a>Function specification</h2>
 
@@ -195,23 +195,25 @@ <h2 class="hasAnchor" id="slurm-configuration"><a class="anchor" href="#slurm-co
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
     <pre class="examples"><div class='input'>
-<span class='kw'>if</span> (<span class='fl'>FALSE</span>) {
+<span class='kw'>if</span> <span class='op'>(</span><span class='cn'>FALSE</span><span class='op'>)</span> <span class='op'>{</span>
 <span class='co'># Create a data frame of mean/sd values for normal distributions </span>
-<span class='no'>pars</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></span>(<span class='kw'>par_m</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/seq.html'>seq</a></span>(-<span class='fl'>10</span>, <span class='fl'>10</span>, <span class='kw'>length.out</span> <span class='kw'>=</span> <span class='fl'>1000</span>),
-                   <span class='kw'>par_sd</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/seq.html'>seq</a></span>(<span class='fl'>0.1</span>, <span class='fl'>10</span>, <span class='kw'>length.out</span> <span class='kw'>=</span> <span class='fl'>1000</span>))
-
+<span class='va'>pars</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></span><span class='op'>(</span>par_m <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/seq.html'>seq</a></span><span class='op'>(</span><span class='op'>-</span><span class='fl'>10</span>, <span class='fl'>10</span>, length.out <span class='op'>=</span> <span class='fl'>1000</span><span class='op'>)</span>, 
+                   par_sd <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/seq.html'>seq</a></span><span class='op'>(</span><span class='fl'>0.1</span>, <span class='fl'>10</span>, length.out <span class='op'>=</span> <span class='fl'>1000</span><span class='op'>)</span><span class='op'>)</span>
+                   
 <span class='co'># Create a function to parallelize</span>
-<span class='no'>ftest</span> <span class='kw'>&lt;-</span> <span class='kw'>function</span>(<span class='no'>par_m</span>, <span class='no'>par_sd</span>) {
- <span class='no'>samp</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/stats/Normal.html'>rnorm</a></span>(<span class='fl'>10</span>^<span class='fl'>7</span>, <span class='no'>par_m</span>, <span class='no'>par_sd</span>)
- <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='kw'>s_m</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/mean.html'>mean</a></span>(<span class='no'>samp</span>), <span class='kw'>s_sd</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/stats/sd.html'>sd</a></span>(<span class='no'>samp</span>))
-}
-
-<span class='no'>sjob1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='slurm_apply.html'>slurm_apply</a></span>(<span class='no'>ftest</span>, <span class='no'>pars</span>)
-<span class='fu'><a href='rslurm-deprecated.html'>print_job_status</a></span>(<span class='no'>sjob1</span>)
-<span class='no'>res</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='get_slurm_out.html'>get_slurm_out</a></span>(<span class='no'>sjob1</span>, <span class='st'>"table"</span>)
-<span class='fu'><a href='https://rdrr.io/r/base/all.equal.html'>all.equal</a></span>(<span class='no'>pars</span>, <span class='no'>res</span>) <span class='co'># Confirm correct output</span>
-<span class='fu'><a href='cleanup_files.html'>cleanup_files</a></span>(<span class='no'>sjob1</span>)
-}</div></pre>
+<span class='va'>ftest</span> <span class='op'>&lt;-</span> <span class='kw'>function</span><span class='op'>(</span><span class='va'>par_m</span>, <span class='va'>par_sd</span><span class='op'>)</span> <span class='op'>{</span>
+ <span class='va'>samp</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/stats/Normal.html'>rnorm</a></span><span class='op'>(</span><span class='fl'>10</span><span class='op'>^</span><span class='fl'>7</span>, <span class='va'>par_m</span>, <span class='va'>par_sd</span><span class='op'>)</span>
+ <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span>s_m <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/mean.html'>mean</a></span><span class='op'>(</span><span class='va'>samp</span><span class='op'>)</span>, s_sd <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/stats/sd.html'>sd</a></span><span class='op'>(</span><span class='va'>samp</span><span class='op'>)</span><span class='op'>)</span>
+<span class='op'>}</span>
+
+<span class='va'>sjob1</span> <span class='op'>&lt;-</span> <span class='fu'><a href='slurm_apply.html'>slurm_apply</a></span><span class='op'>(</span><span class='va'>ftest</span>, <span class='va'>pars</span><span class='op'>)</span>
+<span class='fu'><a href='print_job_status.html'>print_job_status</a></span><span class='op'>(</span><span class='va'>sjob1</span><span class='op'>)</span>
+<span class='va'>res</span> <span class='op'>&lt;-</span> <span class='fu'><a href='get_slurm_out.html'>get_slurm_out</a></span><span class='op'>(</span><span class='va'>sjob1</span>, <span class='st'>"table"</span><span class='op'>)</span>
+<span class='fu'><a href='https://rdrr.io/r/base/all.equal.html'>all.equal</a></span><span class='op'>(</span><span class='va'>pars</span>, <span class='va'>res</span><span class='op'>)</span> <span class='co'># Confirm correct output</span>
+<span class='fu'><a href='cleanup_files.html'>cleanup_files</a></span><span class='op'>(</span><span class='va'>sjob1</span><span class='op'>)</span>
+<span class='op'>}</span>
+  
+</div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
     <nav id="toc" data-toggle="toc" class="sticky-top">
@@ -227,7 +229,7 @@ <h2 data-toc-skip>Contents</h2>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/slurm_apply.html b/docs/reference/slurm_apply.html
index 79981e5..97db5d3 100644
--- a/docs/reference/slurm_apply.html
+++ b/docs/reference/slurm_apply.html
@@ -76,7 +76,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -84,7 +84,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -101,7 +101,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -315,7 +315,7 @@ <h2 data-toc-skip>Contents</h2>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/reference/slurm_call.html b/docs/reference/slurm_call.html
index 7821566..e434b5a 100644
--- a/docs/reference/slurm_call.html
+++ b/docs/reference/slurm_call.html
@@ -75,7 +75,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -83,7 +83,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -100,7 +100,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -127,20 +127,20 @@ <h1>Execution of a single function call on the Slurm cluster</h1>
 cluster.</p>
     </div>
 
-    <pre class="usage"><span class='fu'>slurm_call</span>(
-  <span class='no'>f</span>,
-  <span class='no'>params</span>,
-  <span class='kw'>jobname</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
-  <span class='kw'>global_objects</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-  <span class='kw'>add_objects</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-  <span class='kw'>pkgs</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/rev.html'>rev</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/zpackages.html'>.packages</a></span>()),
-  <span class='kw'>libPaths</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-  <span class='kw'>rscript_path</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-  <span class='kw'>r_template</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-  <span class='kw'>sh_template</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
-  <span class='kw'>slurm_options</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(),
-  <span class='kw'>submit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>
-)</pre>
+    <pre class="usage"><span class='fu'>slurm_call</span><span class='op'>(</span>
+  <span class='va'>f</span>,
+  params <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span><span class='op'>(</span><span class='op'>)</span>,
+  jobname <span class='op'>=</span> <span class='cn'>NA</span>,
+  global_objects <span class='op'>=</span> <span class='cn'>NULL</span>,
+  add_objects <span class='op'>=</span> <span class='cn'>NULL</span>,
+  pkgs <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/rev.html'>rev</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/zpackages.html'>.packages</a></span><span class='op'>(</span><span class='op'>)</span><span class='op'>)</span>,
+  libPaths <span class='op'>=</span> <span class='cn'>NULL</span>,
+  rscript_path <span class='op'>=</span> <span class='cn'>NULL</span>,
+  r_template <span class='op'>=</span> <span class='cn'>NULL</span>,
+  sh_template <span class='op'>=</span> <span class='cn'>NULL</span>,
+  slurm_options <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span><span class='op'>(</span><span class='op'>)</span>,
+  submit <span class='op'>=</span> <span class='cn'>TRUE</span>
+<span class='op'>)</span></pre>
 
     <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
@@ -263,7 +263,7 @@ <h2 data-toc-skip>Contents</h2>
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
 </div>
 
       </footer>
diff --git a/docs/reference/slurm_job.html b/docs/reference/slurm_job.html
index db0fd61..5c9e388 100644
--- a/docs/reference/slurm_job.html
+++ b/docs/reference/slurm_job.html
@@ -76,7 +76,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -84,7 +84,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -101,7 +101,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -170,7 +170,7 @@ <h2 data-toc-skip>Contents</h2>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/docs/reference/slurm_map.html b/docs/reference/slurm_map.html
index 6e55fb6..af2be9c 100644
--- a/docs/reference/slurm_map.html
+++ b/docs/reference/slurm_map.html
@@ -76,7 +76,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">rslurm</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.0</span>
       </span>
     </div>
 
@@ -84,7 +84,7 @@
       <ul class="nav navbar-nav">
         <li>
   <a href="../index.html">
-    <span class="fas fa fas fa-home fa-lg"></span>
+    <span class="fas fa-home fa-lg"></span>
      
   </a>
 </li>
@@ -101,7 +101,7 @@
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/SESYNC-ci/rslurm/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
@@ -309,7 +309,7 @@ <h2 data-toc-skip>Contents</h2>
 
       <footer>
       <div class="copyright">
-  <p>Developed by .</p>
+  <p>Developed by Philippe Marchand, Ian Carroll, Mike Smorul, Rachael Blake, Quentin Read.</p>
 </div>
 
 <div class="pkgdown">
diff --git a/vignettes/_rslurm_test_apply/f.RDS b/vignettes/_rslurm_test_apply/f.RDS
index 0f64148fe33d8ba9fc7676b165b6cbeccc385ce5..39c554d5f4057958afb41ec447d38ce38fb0b0f3 100644
GIT binary patch
literal 1326
zcmV+}1=0E+iwFP!000001I<`%Pa8)N-t*Z8L!cytKu{^Bg`ACy41J+V15ttC)T%LU
z3>8%)EXzKM75hx@jzWd<2m1^1t^c84tA_60&YZ{Vz1H!ko-}^;=9!tDo!vX{-pLqa
z%w%ycW`Z|a;`per_L#Ax$yhwb6$U3$9Fv|~ckMH7J;Cor1BS6lE^*Q}K;nw`2=_i~
zwrnsL*PmS8ahc|_0Bw*S*Vt8q|4tFjO5U|SyXMx<*Umd_JO7Jo*BW`(YhAkS{IAWQ
z9ozS9FCtu`)pP=KD#%4DEpG2u&n}&MdTT8$&~J8}%tg(uwl8yOfnFn<zCrUezr0%e
zLRh;_$8Bde)=xL3A#nintT3-<JWi#z(`~!vWQ21zm-e_7S9uMoKnLTECUJA$sVjvT
zxpZDTohv6|sL7^RkToBJX<-_xl;3Rg(ewU!AHf{%yj@!T{VVeiwQ}`V&BMyYFoo|9
zE5(z#k6i}0e(!W@lN%Mw!Kt-vWlYH}-@f*r=_3pxJ-tkvHLvYP*}lSA$4VHwO7Lm(
z?B_MVCRe%fmKY03Ni;^_-UJ*6yaW7LP$0%$Y5c|YE%+jjPtFYZkHTZ}6X+i(m=Uu<
z_*uXY!GBrQk?;!&=ETGiei3k)_@@ZJqF@#ZiM*xY4b<WU>W}~&CH0#O7m|z>>(()-
z-v^MV>W}rCBK!p4UGUF9dm8lj2x9$2dsX9)@uvxoaqdI>1hi)~Jo*c69`rK=MgONT
zm&iXLi1Edo&S`jzKS%s$3F7=d)Z|b7=L!E1@FOxmqMZi)B0-G57~zlc(}Z6Fd_>|e
z!@ba31aW<>MEGO;N1FMw2*1ku*AL|dC)TG4JR+{2JeLj7Ckf*ES?BUn<B#z-2tNV{
zFCRnX@hRc&5EQ%^+h>HI1f=Wxb1s{pzef=B`-021#vk+BB>XfWu0N6Qmt3BJewHB4
z&*KPxjQ>Q_|19CR$@u07;`(|<_<6tuQomioFA~K1?Gb(n@MBWH=UfV)|AZjcZ=cJ7
z#vk)95PliZBK3R0r3m^AL9E|55&jszsOdjL_yaP&EJ2K4X8r3kOZ){V)<5pv5QT{C
z#}B~cdmVZ77aYF-CpEm_=>MO}zmm<~El#7^X5GhGyzZZ>dm6v<+IDak@)Wg|9}jj9
zOK>+{+AkbccPf?Qi!!L<_VtB}JCDL~dGDxrh@5F<END*3IMu@8%Y&U#B{azWmqFGF
zn>W@lN!`c5kXv<cr&Q`skh-MG#|PED!*b<FLz>p9HJDva7rQt20gbXcqp0=}10DmH
z%JD8{u>U=|8zSU;4}p~8|B;T?#I)WFHW$4QS6pnpl}9TT9*yukwzUQ=7H;L?z=X$_
z3=T)0hftlPYOjIn@YI9HtGGA}MfR2m4qR$i$i_C-6^(I<jZKxwDT;`E*}vz_BG9Nu
zB^mcfFWaaT2g7KOZb>3L4ik=hBu$JT>#Bx}t`hu|8dZQ`S*31S@6nE)ujpwlG{i&Y
zID9RrcP@Sd75RXmdi8yw2v385tA8Fazl{B*W4wlBgl{Y<Eez2M>~DI$e9$wGMeYsh
z7vp~B?I4+kQPrJlf^~Psv7w`?|NjZr-7lE$8&$Oqt;Vm;J1x7S`$QzyMYpYdA{xB&
zK#(zRpfX9K6fX;@HF{Qdza_jx`U&F{l);(&>t%*lS2q{x-bww`t;D;xB+<UWb@gTI
k$)!k*<U1g6p1EcHUnt~*tqeNQ5DzK;04ZNA{n`@%0OHG}UjP6A

literal 1331
zcmV-31<d*%iwFP!000001I<`bPa8)N-n+96hCoROfuK^H7IJoE1T-y86o?80r&f$<
zW2mSaVOjQ3tl%@fI|>!bQ(yZB`peoM&|lEks-e5LGw1PouW|g;lg8iPd^5ANvwP>=
zI~-w*SuDX!W+i!(B@gxsOOF^!S&Su2t}r;6=9u!my5}5o>oI;e95RfJb4if40g_O>
zhq(7~^V9)zas9>REtg3ybI=Cqay2g+{C9$A7MDH8cWPe!Wa*^ca+ZJeoLXbq^H0yc
z*78ryA6zF096u&p^0euO<V2W@RNCA=s2-oY_00NGMqtovyV<jvS8bi=GXniaE^~$E
z8GiY-)|s&O+_u-suC5%dNkifQ<~d<r&-$FoY-Cza&CLquTt4G-E3WbzQh^S}8%^TY
zj$2m>F?8;}cH0+j%urKJzaVQq0@K1YR_UPG;-lyN^FG2k-2DB|Uw_O0@=&c@{j}y|
z<xEWB>%B_xupVHS;cd`8o!aDv#d2_KEk_wsYCUi+gQxlk{YY0YW5>-)r%`q;aMrOB
zhOQEP+I;6(EvU&=Zu~)vg`_1KLvU{ajso5Qek3dqW3M#+;(7tT$m5eU1^&bEn0ycV
zI|^pSY!H4L@I&xl5OpN{oPv2VafF`-Tp<2w!Y?YAgF+&2D|iL9ID|SR0f$Nb#-oKK
zW0{>ghV}aZ@>Kn?eiMWr1H1|TS!hp!{uV*3pJ+eO_+$J@!egA<5I+g+DGiVQf|~{X
z6hYDd5zHm>cL-v9F{d*c9^=mt|7n6azjrnHQ~z1Q-v#`L%#UbiKtE3q<Il(VWBd%^
z?*ZN?@fYA;=xu_yz7}KrG5&qc{Mm$mz<SpY<pn3!rv*GBuAgNttDsL2#Pzen<)y|S
z<F68a2oPRAhREYn!rve$crmtzgdYc_>-#e<YoNbH5cB(-%ZA1u^IIeQBp|Lok?$8=
z9)o_GAkNRD7=MiaSkwPB;Wx<mW(eZ?dP?|Nz&TRCEyB+e#QJR${vP1Rq<+u16hQw8
zL9E{nmtBoN=3gNE0-#Om_nb=+^jU&fzprBaF@90gf0ppOWPCY-7{APV*JqCS3r?(m
z+`S<R5!;V%fyehc^5`!(eE*MYc)`*CKb3zao84QSMzh5_kF$8)KT-EILHo7i;x6O~
zYAfIEZta!eZnU&h*spF@D#hnzP$itpGY@wjg@f|;esK>u%g)-+9G7vbg}s-%o25!*
zkbjp!&W@T__8>{!#=wwUb$hc^>P?Wkq{|1p)$P4<WnV*D_L1G6U0xTvJNG_~ayp~9
z_5cGO0hh|b7G|*X4Y?a2<a-Z+l;Z!9j@HDo-}E;Z-49nnY`v97D;*t;@I1D@1T7YA
z<>A1D$CoS)N1lgJou_KQf$HeggU73cI1I)1mJAPEYFEgbt1F7eIKsx7%H$PAOup>D
z^JXz<)Z>y&_@tK&REmRPyho=bu^mSVCw!77#y2~v!J?}KKc&VMAY4}IYu0_VqvtDn
zT8j+vP&o=;3+nB&pFu@FAgEqFUnru};6Li02h1;Hf9n{(AsOLorlf@-dV&2-*Ow1^
z=CR4WA^lA5XI=M`X%to6sU}%xXKW4}RsH`@vd(_Ndf%w3b!0Vqane3@D!NZZa$R)V
z$|s`!I}ZgJ;|eO1B1-YHkXoZ_W%pXbOQe@DjzAfn$-i7+cy)9$k?yV3Ph3m9c})`S
p30zlSw!U17)JVPqLg%S#*87D*KG@2jLk;ne@-I?1sTJB2005X{qM-l)

diff --git a/vignettes/_rslurm_test_apply/more_args.RDS b/vignettes/_rslurm_test_apply/more_args.RDS
index 36e701240f69e3183868b34b8f5ee9f568ed496f..184ab293d3800b0a3de172f48fbfaff36eec7a73 100644
GIT binary patch
literal 44
vcmb2|=3oE==I#ec2?+^l35-c;VG5HQO-+vYUS~QX!1j^B<yfMqJWvq;3V{rL

literal 46
xcmb2|=3oE==I#ec2?+^l35f|w32CfGk`d0%cS>{{coGHp8Cn*3GRXs#0RR)j3z+}_

diff --git a/vignettes/_rslurm_test_apply/params.RDS b/vignettes/_rslurm_test_apply/params.RDS
index a6c37b108a40371c841fbcde2cf37eb81846df39..9bc11b1c8d5e7c64787326d2c8d371bf796f8c6c 100644
GIT binary patch
literal 212
zcmV;_04x6=iwFP!000001B>8dU|?WoU;$!gRv?psH8jLc*8(Ue4CF8Y@jEEZ2vo!g
zr1_Hba|;raOX4&0N{Ukp(PUYY5{pxzV!U8+2>lPF6J(Wx3IiC}e?X;?)NtAFoCyN6
z>`y}J%f=vJVt*6Le*o3{7%XmV|11pz((PYD<=>nEfwKs+S&-exnwOZHS`1_efE@}E
zWGhH4iq9=Y<`t))YfR2bEQV=>338<*mL%$>6#>meQ_fkGU#<tU3ls=U4M5`m|Nq}W
Oo&^B*2*aLw0RR9>MpzsG

literal 213
zcmV;`04o0<iwFP!000001B>8dU|?WoU}0clU}gm}8CXL@+;lB~V!}WU6A-_H(u_bw
zoIsi{IX|}`F}Wl@Gq0pLwGd5~B`L8u6)MIH7KhOPKsrHIIjAszf&B+m8c7Y8{mz*n
zFw6cVl)h{X0w(r1q5KC>y^q1-#`e$BKp@@zB~<>+84x&&Fq;M0jjVZzxv9lKh5*>1
z5J9$r#G?4zQe<9n3cAMRoWx?7MwlR1N@7W(URn{*Of==3Mfv4=FuOp3z|;UF{{R2~
P4dht>!{^;gdI10cY^+`I

diff --git a/vignettes/_rslurm_test_call/f.RDS b/vignettes/_rslurm_test_call/f.RDS
index 0f64148fe33d8ba9fc7676b165b6cbeccc385ce5..39c554d5f4057958afb41ec447d38ce38fb0b0f3 100644
GIT binary patch
literal 1326
zcmV+}1=0E+iwFP!000001I<`%Pa8)N-t*Z8L!cytKu{^Bg`ACy41J+V15ttC)T%LU
z3>8%)EXzKM75hx@jzWd<2m1^1t^c84tA_60&YZ{Vz1H!ko-}^;=9!tDo!vX{-pLqa
z%w%ycW`Z|a;`per_L#Ax$yhwb6$U3$9Fv|~ckMH7J;Cor1BS6lE^*Q}K;nw`2=_i~
zwrnsL*PmS8ahc|_0Bw*S*Vt8q|4tFjO5U|SyXMx<*Umd_JO7Jo*BW`(YhAkS{IAWQ
z9ozS9FCtu`)pP=KD#%4DEpG2u&n}&MdTT8$&~J8}%tg(uwl8yOfnFn<zCrUezr0%e
zLRh;_$8Bde)=xL3A#nintT3-<JWi#z(`~!vWQ21zm-e_7S9uMoKnLTECUJA$sVjvT
zxpZDTohv6|sL7^RkToBJX<-_xl;3Rg(ewU!AHf{%yj@!T{VVeiwQ}`V&BMyYFoo|9
zE5(z#k6i}0e(!W@lN%Mw!Kt-vWlYH}-@f*r=_3pxJ-tkvHLvYP*}lSA$4VHwO7Lm(
z?B_MVCRe%fmKY03Ni;^_-UJ*6yaW7LP$0%$Y5c|YE%+jjPtFYZkHTZ}6X+i(m=Uu<
z_*uXY!GBrQk?;!&=ETGiei3k)_@@ZJqF@#ZiM*xY4b<WU>W}~&CH0#O7m|z>>(()-
z-v^MV>W}rCBK!p4UGUF9dm8lj2x9$2dsX9)@uvxoaqdI>1hi)~Jo*c69`rK=MgONT
zm&iXLi1Edo&S`jzKS%s$3F7=d)Z|b7=L!E1@FOxmqMZi)B0-G57~zlc(}Z6Fd_>|e
z!@ba31aW<>MEGO;N1FMw2*1ku*AL|dC)TG4JR+{2JeLj7Ckf*ES?BUn<B#z-2tNV{
zFCRnX@hRc&5EQ%^+h>HI1f=Wxb1s{pzef=B`-021#vk+BB>XfWu0N6Qmt3BJewHB4
z&*KPxjQ>Q_|19CR$@u07;`(|<_<6tuQomioFA~K1?Gb(n@MBWH=UfV)|AZjcZ=cJ7
z#vk)95PliZBK3R0r3m^AL9E|55&jszsOdjL_yaP&EJ2K4X8r3kOZ){V)<5pv5QT{C
z#}B~cdmVZ77aYF-CpEm_=>MO}zmm<~El#7^X5GhGyzZZ>dm6v<+IDak@)Wg|9}jj9
zOK>+{+AkbccPf?Qi!!L<_VtB}JCDL~dGDxrh@5F<END*3IMu@8%Y&U#B{azWmqFGF
zn>W@lN!`c5kXv<cr&Q`skh-MG#|PED!*b<FLz>p9HJDva7rQt20gbXcqp0=}10DmH
z%JD8{u>U=|8zSU;4}p~8|B;T?#I)WFHW$4QS6pnpl}9TT9*yukwzUQ=7H;L?z=X$_
z3=T)0hftlPYOjIn@YI9HtGGA}MfR2m4qR$i$i_C-6^(I<jZKxwDT;`E*}vz_BG9Nu
zB^mcfFWaaT2g7KOZb>3L4ik=hBu$JT>#Bx}t`hu|8dZQ`S*31S@6nE)ujpwlG{i&Y
zID9RrcP@Sd75RXmdi8yw2v385tA8Fazl{B*W4wlBgl{Y<Eez2M>~DI$e9$wGMeYsh
z7vp~B?I4+kQPrJlf^~Psv7w`?|NjZr-7lE$8&$Oqt;Vm;J1x7S`$QzyMYpYdA{xB&
zK#(zRpfX9K6fX;@HF{Qdza_jx`U&F{l);(&>t%*lS2q{x-bww`t;D;xB+<UWb@gTI
k$)!k*<U1g6p1EcHUnt~*tqeNQ5DzK;04ZNA{n`@%0OHG}UjP6A

literal 1331
zcmV-31<d*%iwFP!000001I<`bPa8)N-n+96hCoROfuK^H7IJoE1T-y86o?80r&f$<
zW2mSaVOjQ3tl%@fI|>!bQ(yZB`peoM&|lEks-e5LGw1PouW|g;lg8iPd^5ANvwP>=
zI~-w*SuDX!W+i!(B@gxsOOF^!S&Su2t}r;6=9u!my5}5o>oI;e95RfJb4if40g_O>
zhq(7~^V9)zas9>REtg3ybI=Cqay2g+{C9$A7MDH8cWPe!Wa*^ca+ZJeoLXbq^H0yc
z*78ryA6zF096u&p^0euO<V2W@RNCA=s2-oY_00NGMqtovyV<jvS8bi=GXniaE^~$E
z8GiY-)|s&O+_u-suC5%dNkifQ<~d<r&-$FoY-Cza&CLquTt4G-E3WbzQh^S}8%^TY
zj$2m>F?8;}cH0+j%urKJzaVQq0@K1YR_UPG;-lyN^FG2k-2DB|Uw_O0@=&c@{j}y|
z<xEWB>%B_xupVHS;cd`8o!aDv#d2_KEk_wsYCUi+gQxlk{YY0YW5>-)r%`q;aMrOB
zhOQEP+I;6(EvU&=Zu~)vg`_1KLvU{ajso5Qek3dqW3M#+;(7tT$m5eU1^&bEn0ycV
zI|^pSY!H4L@I&xl5OpN{oPv2VafF`-Tp<2w!Y?YAgF+&2D|iL9ID|SR0f$Nb#-oKK
zW0{>ghV}aZ@>Kn?eiMWr1H1|TS!hp!{uV*3pJ+eO_+$J@!egA<5I+g+DGiVQf|~{X
z6hYDd5zHm>cL-v9F{d*c9^=mt|7n6azjrnHQ~z1Q-v#`L%#UbiKtE3q<Il(VWBd%^
z?*ZN?@fYA;=xu_yz7}KrG5&qc{Mm$mz<SpY<pn3!rv*GBuAgNttDsL2#Pzen<)y|S
z<F68a2oPRAhREYn!rve$crmtzgdYc_>-#e<YoNbH5cB(-%ZA1u^IIeQBp|Lok?$8=
z9)o_GAkNRD7=MiaSkwPB;Wx<mW(eZ?dP?|Nz&TRCEyB+e#QJR${vP1Rq<+u16hQw8
zL9E{nmtBoN=3gNE0-#Om_nb=+^jU&fzprBaF@90gf0ppOWPCY-7{APV*JqCS3r?(m
z+`S<R5!;V%fyehc^5`!(eE*MYc)`*CKb3zao84QSMzh5_kF$8)KT-EILHo7i;x6O~
zYAfIEZta!eZnU&h*spF@D#hnzP$itpGY@wjg@f|;esK>u%g)-+9G7vbg}s-%o25!*
zkbjp!&W@T__8>{!#=wwUb$hc^>P?Wkq{|1p)$P4<WnV*D_L1G6U0xTvJNG_~ayp~9
z_5cGO0hh|b7G|*X4Y?a2<a-Z+l;Z!9j@HDo-}E;Z-49nnY`v97D;*t;@I1D@1T7YA
z<>A1D$CoS)N1lgJou_KQf$HeggU73cI1I)1mJAPEYFEgbt1F7eIKsx7%H$PAOup>D
z^JXz<)Z>y&_@tK&REmRPyho=bu^mSVCw!77#y2~v!J?}KKc&VMAY4}IYu0_VqvtDn
zT8j+vP&o=;3+nB&pFu@FAgEqFUnru};6Li02h1;Hf9n{(AsOLorlf@-dV&2-*Ow1^
z=CR4WA^lA5XI=M`X%to6sU}%xXKW4}RsH`@vd(_Ndf%w3b!0Vqane3@D!NZZa$R)V
z$|s`!I}ZgJ;|eO1B1-YHkXoZ_W%pXbOQe@DjzAfn$-i7+cy)9$k?yV3Ph3m9c})`S
p30zlSw!U17)JVPqLg%S#*87D*KG@2jLk;ne@-I?1sTJB2005X{qM-l)

diff --git a/vignettes/_rslurm_test_call/params.RDS b/vignettes/_rslurm_test_call/params.RDS
index f8ffe5b82ab2639064370e4f71151169865d1fa7..91662fd197681689fbdaf7c16029b0e9e79e8784 100644
GIT binary patch
literal 96
zcmb2|=3oE==I#ec2?+^l35-c;VG5HQO-+vYUT<n_^prS}$dqKKkX9m)*uZFT{~vSD
xX{MmV93~CIODy#b&9_RN5Man|<JcssB6jroG^Nj7!3}Hb88oNg6RrUo3;^w_Ar$}s

literal 98
zcmb2|=3oE==I#ec2?+^l35f|w32CfGk`d0%cS>|6BxbZU%BU$kV@`5o7i5!Q`25!X
yzz!V+(;f$A3&&ZXg^Gi_8+jNvq;)7nJ0=Cz<Y^kMw_rW-i=82(@?<~_&}aa%u^&zV