From 2ac0f4d17c40e48cef2b7acbb2cfa5343f98b11f Mon Sep 17 00:00:00 2001 From: Richard Top Date: Tue, 28 May 2024 16:35:50 +0000 Subject: [PATCH 1/3] Adding cpio dependency to BLAST+ --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb | 1 + easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb | 1 + 2 files changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb index 142ad4eb6aa..17805bd9c66 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb @@ -36,6 +36,7 @@ dependencies = [ ('libpng', '1.6.38'), ('libjpeg-turbo', '2.1.4'), ('LMDB', '0.9.29'), + ('cpio', '2.15'), ] configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 " diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb index 47c8e2d2ef6..fc4e292d217 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb @@ -36,6 +36,7 @@ dependencies = [ ('libpng', '1.6.39'), ('libjpeg-turbo', '2.1.5.1'), ('LMDB', '0.9.31'), + ('cpio', '2.15'), ] configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 " From 45a0a993b48ec89b7c6d25908fd9b354c6921931 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Tue, 28 May 2024 20:05:11 +0200 Subject: [PATCH 2/3] move cpio to builddependencies --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb | 3 ++- easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb index 17805bd9c66..50076e9cf68 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb @@ -27,6 +27,8 @@ source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/%(namelower)s/%(v sources = ['ncbi-blast-%(version)s+-src.tar.gz'] checksums = ['bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500'] +builddependencies = [('cpio', '2.15')] + dependencies = [ ('zlib', '1.2.12'), ('bzip2', '1.0.8'), @@ -36,7 +38,6 @@ dependencies = [ ('libpng', '1.6.38'), ('libjpeg-turbo', '2.1.4'), ('LMDB', '0.9.29'), - ('cpio', '2.15'), ] configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 " diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb index fc4e292d217..bf395c800b1 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb @@ -27,6 +27,8 @@ source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/%(namelower)s/%(v sources = ['ncbi-blast-%(version)s+-src.tar.gz'] checksums = ['712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e'] +builddependencies = [('cpio', '2.15')] + dependencies = [ ('zlib', '1.2.13'), ('bzip2', '1.0.8'), @@ -36,7 +38,6 @@ dependencies = [ ('libpng', '1.6.39'), ('libjpeg-turbo', '2.1.5.1'), ('LMDB', '0.9.31'), - ('cpio', '2.15'), ] configopts = "--with-64 --with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 " From 5b90fd819f80f16940fa2878c4838afa6f0d0940 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bob=20Dr=C3=B6ge?= Date: Tue, 28 May 2024 20:05:21 +0200 Subject: [PATCH 3/3] add cpio as build dependency --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb index fb96f2a9897..28a66d168ce 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb @@ -27,6 +27,8 @@ source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/%(namelower)s/%(v sources = ['ncbi-blast-%(version)s+-src.tar.gz'] checksums = ['89553714d133daf28c477f83d333794b3c62e4148408c072a1b4620e5ec4feb2'] +builddependencies = [('cpio', '2.14')] + dependencies = [ ('zlib', '1.2.12'), ('bzip2', '1.0.8'),