From 66f6a43486cd3d13b23b6bf1317568726b734777 Mon Sep 17 00:00:00 2001
From: Pavel Tomanek <shavel.tom@gmail.com>
Date: Tue, 10 Dec 2024 14:05:09 +0100
Subject: [PATCH 1/2] adding easyconfigs:
 EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb

---
 ...AX-20120210-GCCcore-13.2.0-intel-binary.eb | 39 +++++++++++++++++++
 1 file changed, 39 insertions(+)
 create mode 100644 easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb

diff --git a/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb b/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb
new file mode 100644
index 00000000000..9d7150c71b2
--- /dev/null
+++ b/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb
@@ -0,0 +1,39 @@
+easyblock = 'Binary'
+
+name = 'EMMAX'
+
+version = '20120210'
+versionsuffix = '-intel-binary'
+
+homepage = 'https://csg.sph.umich.edu/kang/emmax'
+description = """EMMAX is a statistical test for large scale human or model organism
+  association mapping accounting for the sample structure"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+source_urls = ['https://csg.sph.umich.edu//kang/emmax/download/']
+sources = [
+    {
+        'download_filename': f'{name.lower()}{versionsuffix}-{version}.tar.gz',
+        'filename': f'{name}-{version}{versionsuffix}.tar.gz'
+    }
+]
+checksums = ['e2a582851ba1be908757d4ef436e98ad76664a0c55e00d13e55fa35fe2ba54dd']
+
+dependencies = [
+    ('zlib', '1.2.13'),
+]
+
+extract_sources = True
+
+sanity_check_paths = {
+    'files': ['emmax-intel64', 'emmax-kin-intel64'],
+    'dirs': [],
+}
+
+sanity_check_commands = [
+    "emmax-intel64 2>&1 | grep '^Usage: emmax'",
+    "emmax-kin-intel64 2>&1 | grep '^Usage: emmax_kin'",
+]
+
+moduleclass = 'bio'

From f52b946e5a254bd9e579274df8236d2bbc5fe64a Mon Sep 17 00:00:00 2001
From: Kenneth Hoste <kenneth.hoste@ugent.be>
Date: Tue, 14 Jan 2025 16:16:58 +0100
Subject: [PATCH 2/2] add symlinks for emmax and emmax-kin commands in
 easyconfig for EMMAX 20120210

---
 .../EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb     | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb b/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb
index 9d7150c71b2..854f3f04718 100644
--- a/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb
+++ b/easybuild/easyconfigs/e/EMMAX/EMMAX-20120210-GCCcore-13.2.0-intel-binary.eb
@@ -26,14 +26,19 @@ dependencies = [
 
 extract_sources = True
 
+postinstallcmds = [
+    "cd %(installdir)s && ln -s emmax-intel64 emmax",
+    "cd %(installdir)s && ln -s emmax-kin-intel64 emmax-kin",
+]
+
 sanity_check_paths = {
-    'files': ['emmax-intel64', 'emmax-kin-intel64'],
+    'files': ['emmax', 'emmax-kin'],
     'dirs': [],
 }
 
 sanity_check_commands = [
-    "emmax-intel64 2>&1 | grep '^Usage: emmax'",
-    "emmax-kin-intel64 2>&1 | grep '^Usage: emmax_kin'",
+    "emmax 2>&1 | grep '^Usage: emmax'",
+    "emmax-kin 2>&1 | grep '^Usage: emmax_kin'",
 ]
 
 moduleclass = 'bio'