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Permalink for cloud properties uncertainty use case #227

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gmandorl opened this issue Oct 10, 2024 · 6 comments · May be fixed by #229
Open

Permalink for cloud properties uncertainty use case #227

gmandorl opened this issue Oct 10, 2024 · 6 comments · May be fixed by #229

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@gmandorl
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Data Type

Satellite ECVs - Atmosphere Physics

Assessment Category

uncertainty-quality-flags

Dataset Name

satellite-cloud-properties

Question Number

1

Workflow ID

eqctier3-bce9bde3-a018-4717-8f3b-56e65d270665

Zipped Notebook

satellite-cloud-properties_uncertainty_q1.zip

Environment

name: wp5
channels:
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - accessible-pygments=0.0.5=pyhd8ed1ab_0
  - affine=2.4.0=pyhd8ed1ab_0
  - aiohttp=3.9.5=py311h459d7ec_0
  - aiosignal=1.3.1=pyhd8ed1ab_0
  - alabaster=0.7.16=pyhd8ed1ab_0
  - alsa-lib=1.2.12=h4ab18f5_0
  - annotated-types=0.7.0=pyhd8ed1ab_0
  - ansicolors=1.1.8=pyhd8ed1ab_0
  - antlr-python-runtime=4.11.1=pyhd8ed1ab_0
  - anyio=4.6.0=pyhd8ed1ab_1
  - argon2-cffi=23.1.0=pyhd8ed1ab_0
  - argon2-cffi-bindings=21.2.0=py311h9ecbd09_5
  - arrow=1.3.0=pyhd8ed1ab_0
  - asciitree=0.3.3=py_2
  - asttokens=2.4.1=pyhd8ed1ab_0
  - async-lru=2.0.4=pyhd8ed1ab_0
  - attrs=24.2.0=pyh71513ae_0
  - aws-c-auth=0.7.31=h57bd9a3_0
  - aws-c-cal=0.7.4=hfd43aa1_1
  - aws-c-common=0.9.28=hb9d3cd8_0
  - aws-c-compression=0.2.19=h756ea98_1
  - aws-c-event-stream=0.4.3=h29ce20c_2
  - aws-c-http=0.8.10=h5e77a74_0
  - aws-c-io=0.14.18=h33ff4e5_10
  - aws-c-mqtt=0.10.6=h02abb05_0
  - aws-c-s3=0.6.6=h834ce55_0
  - aws-c-sdkutils=0.1.19=h756ea98_3
  - aws-checksums=0.1.20=h756ea98_0
  - aws-crt-cpp=0.28.3=h469002c_5
  - aws-sdk-cpp=1.11.407=h9f1560d_0
  - azure-core-cpp=1.13.0=h935415a_0
  - azure-identity-cpp=1.8.0=hd126650_2
  - azure-storage-blobs-cpp=12.12.0=hd2e3451_0
  - azure-storage-common-cpp=12.7.0=h10ac4d7_1
  - azure-storage-files-datalake-cpp=12.11.0=h325d260_1
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  - bzip2=1.0.8=h4bc722e_7
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  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
  - cads-api-client=1.4.2=pyhd8ed1ab_0
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  - click=8.1.7=unix_pyh707e725_0
  - click-plugins=1.1.1=py_0
  - cligj=0.7.2=pyhd8ed1ab_1
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  - debugpy=1.8.6=py311hfdbb021_0
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  - defusedxml=0.7.1=pyhd8ed1ab_0
  - distributed=2024.9.0=pyhd8ed1ab_0
  - docutils=0.20.1=py311h38be061_3
  - double-conversion=3.3.0=h59595ed_0
  - earthkit-data=0.10.4=pyhd8ed1ab_0
  - entrypoints=0.4=pyhd8ed1ab_0
  - esmf=8.6.1=nompi_h4441c20_3
  - esmpy=8.6.1=pyhc1e730c_0
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  - fontconfig=2.14.2=h14ed4e7_0
  - fonts-conda-ecosystem=1=0
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  - frozenlist=1.4.1=py311h9ecbd09_1
  - fsspec=2024.9.0=pyhff2d567_0
  - gdal=3.9.2=py311h5159542_4
  - geopandas=1.0.1=pyhd8ed1ab_1
  - geopandas-base=1.0.1=pyha770c72_1
  - geos=3.12.2=he02047a_1
  - geotiff=1.7.3=h77b800c_3
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  - greenlet=3.1.1=py311hfdbb021_0
  - h11=0.14.0=pyhd8ed1ab_0
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  - harfbuzz=9.0.0=hda332d3_1
  - hdf4=4.2.15=h2a13503_7
  - hdf5=1.14.3=nompi_hdf9ad27_105
  - hpack=4.0.0=pyh9f0ad1d_0
  - httpcore=1.0.5=pyhd8ed1ab_0
  - httpx=0.27.2=pyhd8ed1ab_0
  - hyperframe=6.0.1=pyhd8ed1ab_0
  - icu=75.1=he02047a_0
  - idna=3.10=pyhd8ed1ab_0
  - imagesize=1.4.1=pyhd8ed1ab_0
  - importlib-metadata=8.5.0=pyha770c72_0
  - importlib_metadata=8.5.0=hd8ed1ab_0
  - importlib_resources=6.4.5=pyhd8ed1ab_0
  - ipykernel=6.29.5=pyh3099207_0
  - ipython=8.27.0=pyh707e725_0
  - isoduration=20.11.0=pyhd8ed1ab_0
  - jasper=4.2.4=h536e39c_0
  - jedi=0.19.1=pyhd8ed1ab_0
  - jinja2=3.1.4=pyhd8ed1ab_0
  - joblib=1.4.2=pyhd8ed1ab_0
  - json-c=0.18=h6688a6e_0
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  - jsonpointer=3.0.0=py311h38be061_1
  - jsonschema=4.23.0=pyhd8ed1ab_0
  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
  - jsonschema-with-format-nongpl=4.23.0=hd8ed1ab_0
  - jupyter-book=1.0.2=pyhd8ed1ab_0
  - jupyter-cache=1.0.0=pyhd8ed1ab_0
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  - jupyter_events=0.10.0=pyhd8ed1ab_0
  - jupyter_server=2.14.2=pyhd8ed1ab_0
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  - jupyterlab=4.2.5=pyhd8ed1ab_0
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  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
  - jupyterlab_server=2.27.3=pyhd8ed1ab_0
  - kealib=1.5.3=hf8d3e68_2
  - keyutils=1.6.1=h166bdaf_0
  - kiwisolver=1.4.7=py311hd18a35c_0
  - krb5=1.21.3=h659f571_0
  - latexcodec=2.0.1=pyh9f0ad1d_0
  - lcms2=2.16=hb7c19ff_0
  - ld_impl_linux-64=2.43=h712a8e2_1
  - lerc=4.0.0=h27087fc_0
  - libabseil=20240116.2=cxx17_he02047a_1
  - libaec=1.1.3=h59595ed_0
  - libarchive=3.7.4=hfca40fe_0
  - libarrow=17.0.0=had3b6fe_16_cpu
  - libarrow-acero=17.0.0=h5888daf_16_cpu
  - libarrow-dataset=17.0.0=h5888daf_16_cpu
  - libarrow-substrait=17.0.0=hf54134d_16_cpu
  - libblas=3.9.0=24_linux64_openblas
  - libbrotlicommon=1.1.0=hb9d3cd8_2
  - libbrotlidec=1.1.0=hb9d3cd8_2
  - libbrotlienc=1.1.0=hb9d3cd8_2
  - libcblas=3.9.0=24_linux64_openblas
  - libclang-cpp19.1=19.1.0=default_hb5137d0_0
  - libclang13=19.1.0=default_h9c6a7e4_0
  - libcrc32c=1.1.2=h9c3ff4c_0
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  - libgdal-fits=3.9.2=h2db6552_4
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  - ncurses=6.5=he02047a_1
  - nest-asyncio=1.6.0=pyhd8ed1ab_0
  - netcdf-fortran=4.6.1=nompi_h22f9119_106
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  - networkx=3.3=pyhd8ed1ab_1
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  - openjpeg=2.5.2=h488ebb8_0
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  - pandas=2.2.3=py311h7db5c69_1
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  - pexpect=4.9.0=pyhd8ed1ab_0
  - pickleshare=0.7.5=py_1003
  - pillow=10.4.0=py311h4aec55e_1
  - pip=24.2=pyh8b19718_1
  - pixman=0.43.2=h59595ed_0
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
  - platformdirs=4.3.6=pyhd8ed1ab_0
  - plotly=5.24.1=pyhd8ed1ab_0
  - pooch=1.8.2=pyhd8ed1ab_0
  - poppler=24.08.0=h47131b8_1
  - poppler-data=0.4.12=hd8ed1ab_0
  - postgresql=16.4=hb2eb5c0_1
  - proj=9.5.0=h12925eb_0
  - prometheus_client=0.21.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.48=pyha770c72_0
  - properscoring=0.1=py_0
  - psutil=6.0.0=py311h9ecbd09_1
  - pthread-stubs=0.4=hb9d3cd8_1002
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.3=pyhd8ed1ab_0
  - pwlf=2.2.1=py311h38be061_4
  - pyarrow=17.0.0=py311hbd00459_1
  - pyarrow-core=17.0.0=py311h4510849_1_cpu
  - pyarrow-hotfix=0.6=pyhd8ed1ab_0
  - pybtex=0.24.0=pyhd8ed1ab_2
  - pybtex-docutils=1.0.3=py311h38be061_2
  - pycparser=2.22=pyhd8ed1ab_0
  - pydantic=2.9.2=pyhd8ed1ab_0
  - pydantic-core=2.23.4=py311h9e33e62_0
  - pydantic-settings=2.5.2=pyhd8ed1ab_0
  - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
  - pydoe=0.3.8=py_1
  - pygments=2.18.0=pyhd8ed1ab_0
  - pyogrio=0.9.0=py311h35c0331_2
  - pyparsing=3.1.4=pyhd8ed1ab_0
  - pyproj=3.6.1=py311h0f98d5a_10
  - pyshp=2.3.1=pyhd8ed1ab_0
  - pyside6=6.7.2=py311h9053184_4
  - pysocks=1.7.1=pyha2e5f31_6
  - python=3.11.10=hc5c86c4_1_cpython
  - python-dateutil=2.9.0=pyhd8ed1ab_0
  - python-dotenv=1.0.1=pyhd8ed1ab_0
  - python-fastjsonschema=2.20.0=pyhd8ed1ab_0
  - python-json-logger=2.0.7=pyhd8ed1ab_0
  - python-tzdata=2024.2=pyhd8ed1ab_0
  - python_abi=3.11=5_cp311
  - pytz=2024.1=pyhd8ed1ab_0
  - pyyaml=6.0.2=py311h9ecbd09_1
  - pyzmq=26.2.0=py311h7deb3e3_2
  - qhull=2020.2=h434a139_5
  - qt6-main=6.7.2=hadfd74e_5
  - rasterio=1.3.11=py311hce1b398_2
  - re2=2023.09.01=h7f4b329_2
  - readline=8.2=h8228510_1
  - referencing=0.35.1=pyhd8ed1ab_0
  - regionmask=0.12.1=pyhd8ed1ab_0
  - requests=2.32.3=pyhd8ed1ab_0
  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
  - rich=13.8.1=pyhd8ed1ab_0
  - rioxarray=0.17.0=pyhd8ed1ab_0
  - rpds-py=0.20.0=py311h9e33e62_1
  - s2n=1.5.3=h7b32b05_0
  - scikit-learn=1.5.2=py311h57cc02b_1
  - scipy=1.14.1=py311he1f765f_0
  - seaborn=0.13.2=hd8ed1ab_2
  - seaborn-base=0.13.2=pyhd8ed1ab_2
  - send2trash=1.8.3=pyh0d859eb_0
  - setuptools=75.1.0=pyhd8ed1ab_0
  - shapely=2.0.6=py311h9036bbf_1
  - shellingham=1.5.4=pyhd8ed1ab_0
  - simpervisor=1.0.0=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.2.1=ha2e4443_0
  - sniffio=1.3.1=pyhd8ed1ab_0
  - snowballstemmer=2.2.0=pyhd8ed1ab_0
  - snuggs=1.4.7=pyhd8ed1ab_1
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
  - sparse=0.15.4=pyhd8ed1ab_0
  - spdlog=1.14.1=hed91bc2_1
  - sphinx=7.4.7=pyhd8ed1ab_0
  - sphinx-book-theme=1.1.3=pyhd8ed1ab_0
  - sphinx-comments=0.0.3=pyh9f0ad1d_0
  - sphinx-copybutton=0.5.2=pyhd8ed1ab_0
  - sphinx-design=0.6.1=pyhd8ed1ab_1
  - sphinx-external-toc=1.0.1=pyhd8ed1ab_0
  - sphinx-jupyterbook-latex=1.0.0=pyhd8ed1ab_0
  - sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
  - sphinx-thebe=0.3.1=pyhd8ed1ab_0
  - sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
  - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-bibtex=2.6.3=pyhd8ed1ab_0
  - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0
  - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
  - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
  - sqlalchemy=2.0.35=py311h9ecbd09_0
  - sqlite=3.46.1=h9eae976_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - statsmodels=0.14.3=py311h9f3472d_1
  - structlog=24.4.0=pyhd8ed1ab_0
  - tabulate=0.9.0=pyhd8ed1ab_1
  - tblib=3.0.0=pyhd8ed1ab_0
  - tenacity=9.0.0=pyhd8ed1ab_0
  - terminado=0.18.1=pyh0d859eb_0
  - threadpoolctl=3.5.0=pyhc1e730c_0
  - tiledb=2.26.1=h4c922dd_1
  - tinycss2=1.3.0=pyhd8ed1ab_0
  - tk=8.6.13=noxft_h4845f30_101
  - toml=0.10.2=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toolz=0.12.1=pyhd8ed1ab_0
  - tornado=6.4.1=py311h9ecbd09_1
  - tqdm=4.66.5=pyhd8ed1ab_0
  - traitlets=5.14.3=pyhd8ed1ab_0
  - typer=0.12.5=pyhd8ed1ab_0
  - typer-slim=0.12.5=pyhd8ed1ab_0
  - typer-slim-standard=0.12.5=hd8ed1ab_0
  - types-python-dateutil=2.9.0.20240906=pyhd8ed1ab_0
  - typing-extensions=4.12.2=hd8ed1ab_0
  - typing_extensions=4.12.2=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
  - tzcode=2024b=hb9d3cd8_0
  - tzdata=2024a=h8827d51_1
  - uc-micro-py=1.0.3=pyhd8ed1ab_0
  - udunits2=2.2.28=h40f5838_3
  - uri-template=1.3.0=pyhd8ed1ab_0
  - uriparser=0.9.8=hac33072_0
  - urllib3=2.2.3=pyhd8ed1ab_0
  - wayland=1.23.1=h3e06ad9_0
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - webcolors=24.8.0=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
  - websocket-client=1.8.0=pyhd8ed1ab_0
  - wheel=0.44.0=pyhd8ed1ab_0
  - xarray=2024.9.0=pyhd8ed1ab_0
  - xarraymannkendall=1.4.5=pyhd8ed1ab_0
  - xcb-util=0.4.1=hb711507_2
  - xcb-util-cursor=0.1.5=hb9d3cd8_0
  - xcb-util-image=0.4.0=hb711507_2
  - xcb-util-keysyms=0.4.1=hb711507_0
  - xcb-util-renderutil=0.3.10=hb711507_0
  - xcb-util-wm=0.4.2=hb711507_0
  - xerces-c=3.2.5=h666cd97_1
  - xesmf=0.8.7=pyhd8ed1ab_0
  - xhistogram=0.3.2=pyhd8ed1ab_0
  - xkeyboard-config=2.42=h4ab18f5_0
  - xorg-fixesproto=5.0=hb9d3cd8_1003
  - xorg-inputproto=2.3.2=hb9d3cd8_1003
  - xorg-kbproto=1.0.7=hb9d3cd8_1003
  - xorg-libice=1.1.1=hd590300_0
  - xorg-libsm=1.2.4=h7391055_0
  - xorg-libx11=1.8.9=hb711507_1
  - xorg-libxau=1.0.11=hb9d3cd8_1
  - xorg-libxdmcp=1.1.3=hb9d3cd8_1
  - xorg-libxext=1.3.4=h0b41bf4_2
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h4bc722e_1
  - xorg-libxrender=0.9.11=hd590300_0
  - xorg-libxtst=1.2.5=h4bc722e_0
  - xorg-libxxf86vm=1.1.5=hb9d3cd8_2
  - xorg-recordproto=1.14.2=hb9d3cd8_1003
  - xorg-renderproto=0.11.1=hb9d3cd8_1003
  - xorg-xextproto=7.3.0=hb9d3cd8_1004
  - xorg-xproto=7.0.31=hb9d3cd8_1008
  - xskillscore=0.0.26=pyhd8ed1ab_0
  - xyzservices=2024.9.0=pyhd8ed1ab_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - yarl=1.12.1=py311h9ecbd09_0
  - zarr=2.18.3=pyhd8ed1ab_0
  - zeromq=4.3.5=ha4adb4c_5
  - zict=3.0.0=pyhd8ed1ab_0
  - zipp=3.20.2=pyhd8ed1ab_0
  - zlib=1.3.1=h4ab18f5_1
  - zstandard=0.23.0=py311hbc35293_1
  - zstd=1.5.6=ha6fb4c9_0
  - pip:
      - alembic==1.13.3
      - c3s-eqc-automatic-quality-control==0.1.2.dev113+g12de045
      - cacholote==1.4.0
      - cgul==0.0.4
      - earthkit-geo==0.2.0
      - earthkit-meteo==0.1.1
      - eccodes==2.38.0
      - ecmwflibs==0.6.3
      - kaleido==0.2.1
      - mako==1.3.5
      - pymannkendall==1.4.3
      - sqlalchemy-utils==0.41.2
prefix: /data/common/miniforge3/envs/wp5

Anything else we need to know?

Hi,

Can I have the permalink for this notebook?
@malmans2 malmans2 linked a pull request Oct 10, 2024 that will close this issue
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@malmans2
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Hi @gmandorl,

I had to make various changes as the notebook was not aligned with the latest template. See: f5fe086
Please make sure to start from this version next time you edit the notebook.

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/f5fe0867488522bbfa5c064105cae80a06744791/Satellite_ECVs/Atmosphere_Physics/satellite_satellite-cloud-properties_uncertainty-quality-flags_q01.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

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@gmandorl
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Hi @malmans2,

Thank you very much for the corrections. I will let you know if I have to edit the notebook.

@gmandorl
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Hi @malmans2,

I modified the notebook and I need a new permanent link. The notebook is attached.
satellite_satellite-cloud-properties_uncertainty_q01.zip

@malmans2
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Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/02005ed069fe11c83a41b6848281411bda73c9dd/Satellite_ECVs/Atmosphere_Physics/satellite_satellite-cloud-properties_uncertainty-quality-flags_q01.ipynb

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@gmandorl
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Hi @malmans2

I modified again the notebook. Can I have a new permanent link?

satellite_satellite-cloud-properties_uncertainty_q01.zip

@malmans2
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Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/b4320b0e86937fc5054c4bd3b509e8d56211cb30/Satellite_ECVs/Atmosphere_Physics/satellite_satellite-cloud-properties_uncertainty-quality-flags_q01.ipynb

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eqctier3-bce9bde3-a018-4717-8f3b-56e65d270665 ecmwf-projects/c3s2-eqc-quality-assessment
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@gmandorl @malmans2