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index.html
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---
layout: default
---
<div class="home">
<div class="site-header-container {% if site.cover %}has-cover{% endif %}" {% if site.cover %}style="background-image: url({{ site.cover | prepend: site.baseurl }});"{% endif %}>
<div class="scrim {% if site.cover %}has-cover{% endif %}">
<header class="site-header">
<h1 class="title">{{ site.title }}</h1>
{% if site.subtitle %}<p class="subtitle">{{ site.subtitle }}</p>{% endif %}
</header>
</div>
</div>
<div class="wrapper">
<h2>Welcome to the EDAMAME course website!</h2>
EDAMAME is an intensive, hands-on course in microbial metagenome analyses, covering workflows from raw sequence analysis through to multivariate statistics and ecological interpretation.
<p align=center><br>
There is no EDAMAME course for 2019, but as always, feel free to check out our GitHub for past tutorials.
<br>
<p align=center><br>
EDAMAME is supported by the National Institutes of Health (1R25GM115335-01), the National Institute of Food and Agriculture (Award 2016-68003-24604), the National Science Foundation Dimensions of Biodiversity program (awards DEB 1737758 and DEB 1737765) and Population and Community Ecology/Ecosystem Sciences Clusters (award DEB 1749544), and Department of Energy, Office of Science, Office of Biological and Environmental Research under Award Number DE-SC0018420.
<p align=center>
<p>
The learning goals for the EDAMAME course are to:
<ul>
<li> Increase computing literacy
<li> Develop proficiency in cloud computing
<li> Analyze microbial amplicon sequences
<li> Analyze microbial shotgun metagenome sequences
<li> Apply ecological statistics to analyze and interpret microbial sequencing data
<li> Access resources provided by public sequence databases
</ul>
<hr>
<h2>Recent Blog posts</h2>
<ul class="post-list">
{% for post in paginator.posts %}
<li>
<h2>
<a class="post-link" href="{{ post.url | prepend: site.baseurl }}">{{ post.title }}</a>
</h2>
<section class="post-excerpt" itemprop="description">
<p>{{ post.content | strip_html | truncatewords: 50 }}</p>
</section>
<section class="post-meta">
<div class="post-date">{{ post.date | date: "%B %-d, %Y" }}</div>
<div class="post-categories">
{% if post.categories.size > 0 %}in {% for cat in post.categories %}
{% if site.jekyll-archives %}
<a href="{{ site.baseurl }}/category/{{ cat }}">{{ cat | capitalize }}</a>{% if forloop.last == false %}, {% endif %}
{% else %}
<span>{{ cat | capitalize }}</span>{% if forloop.last == false %}, {% endif %}
{% endif %}
{% endfor %}{% endif %}
</div>
</section>
</li>
{% if forloop.last == false %}
<hr>
{% endif %}
{% endfor %}
</ul>
<nav class="pagination" role="navigation">
<p>
{% if paginator.next_page %}
<a class="newer-posts" href="{{ site.baseurl }}/page{{paginator.next_page}}">
<span class="fa-stack fa-lg">
<i class="fa fa-square fa-stack-2x"></i>
<i class="fa fa-angle-double-left fa-stack-1x fa-inverse"></i>
</span>
</a>
{% else %}
<span class="fa-stack fa-lg">
<i class="fa fa-square fa-stack-2x"></i>
<i class="fa fa-angle-double-left fa-stack-1x fa-inverse"></i>
</span>
{% endif %}
<span class="page-number">Page {{ paginator.page }} of {{ paginator.total_pages }}</span>
{% if paginator.previous_page %}
{% if paginator.page == 2 %}
<a class="newer-posts" href="{% if site.baseurl %}{{ site.baseurl }}{% endif %}/">
<span class="fa-stack fa-lg">
<i class="fa fa-square fa-stack-2x"></i>
<i class="fa fa-angle-double-right fa-stack-1x fa-inverse"></i>
</span>
</a>
{% else %}
<a class="newer-posts" href="{{ site.baseurl }}/page{{paginator.previous_page}}">
<span class="fa-stack fa-lg">
<i class="fa fa-square fa-stack-2x"></i>
<i class="fa fa-angle-double-right fa-stack-1x fa-inverse"></i>
</span>
</a>
{% endif %}
{% else %}
<span class="fa-stack fa-lg">
<i class="fa fa-square fa-stack-2x"></i>
<i class="fa fa-angle-double-right fa-stack-1x fa-inverse"></i>
</span>
{% endif %}
</p>
<p>
<a href="{{ site.baseurl }}/posts">View All Posts by Category</a>
</p>
</nav>
</div>
</div>