CHANGELOG

[Current]

Minor release 0.15.2.
Updated tests and fixed indentation.
New framework for Cluster fitting with WL data (in progress).
New minor version. Reorganizing WL likelihood (in progress).

[v0.15.1]

Default refine set to 1.
More options to refine.
Add refine as an option.
Added vectorized interface for nc_wl_surface_mass_density_reduced_shear. Minor other improvements.
Improvement in ncm_spline_func to remove outliers.
Update c-cpp.yml

Removed distcheck (split into check and dist)
Update c-cpp.yml

Added --enable-man
Update c-cpp.yml

Added reqs for doc building.
Update c-cpp.yml

Added doc building
Update c-cpp.yml

Added support for gtk-doc
Update c-cpp.yml

added parallel build and upload artifact
Update c-cpp.yml

More deps and removed double configure.
Update c-cpp.yml

More missing deps
Update c-cpp.yml

Added more missing deps
Update c-cpp.yml

Added missing dep: gfortran.
Update c-cpp.yml

Testing install prereqs.
Update c-cpp.yml

Added prereqs
Updated and finished support for CCL in Dockerfile-clmm-jupyter.
Added python3-yaml support.
Added support for CAMB and CCL.
Support for CCL and CAMB.
Adding support for camb and ccl.
Fixed new filename.
Notebook comparing Colossus and CCL with NumCosmo: density profiles, surface mass density and the excess smd.
Added hook between nc_halo_mass_function and ncm_powspec_filter to ensure the same redshift range.
Fixed minor leak.
Minor fixes and improvements in ncm_spline_func_test.*.
Update c-cpp.yml

Testing github actions
Create c-cpp.yml

Trying the github actions.
Included new distance functions from z1 to z2.
Test suit NcmSplineFuncTest is now stable enough. Next step: add some cosmological functions examples.
Doc. minor changes.
Memory leak - ncm_spline_new_function_4
Added new outlier function to last description example.
Corrected vector memory lost.
Added option to save outliers grid to further analysis.
Added test suite to NcmSplineFunc.
Tutorial reviewed.
Text review (Mari).
Added missing ipywidgets from docker build.
Fixed makefiles.
Reorganized and added copyright notices to notebooks.
New tutorial.
New code for homogeneous knots.
ncm_vector.c documentation improve.

Doc. improvement.

 * NcDataCMB
* NcDataCMBShiftParam
* NcDataCMBDistPriors

Minor doc. modification.
Minor doc. changes.
Added support for abstol in NcmSplineFunc.
Set max order to 3 in NcmODESpline to make the ode integration tolerance agree with spline interpolation error.
Removed old CCL interface (they no longer have a C api, we are moving to test in python since their API is only there).

Improve doc. & fixed indentation:

 * NcPowspecML
* NcPowspecMLFixSpline
* NcPowspecMLTransfer
* NcPowspecMLCBE
* NcPowspecMNL
* NcPowspecMNLHaloFit

Transfer function improve doc.
NcTransferFuncEH: fixed indentation.
NcTransferFuncEH: improve doc.
NcTransferFuncBBKS: corrected minor typo.
NcTransferFuncBBKS: fixed indentation.
NcTransferFuncBBKS: improve doc. Add BBKS ref.
NcTransferFunc: fixed indentation.
NcTransferFunc: improve doc.
NcWindowGaussian & NcWindowTophat: standardization between both descriptions.
NcWindowGaussian: fixed indentation.
NcWindowGaussian: improve doc.
NcWindow: fixed indentation.
NcWindow: improve doc.
NcWindowTophat: fixed indentation.
NcWindowTophat: improve doc.

Note: it seems that latex commands "cases" and "array" does not work.
More debug messages in MPI.
Better debug messages and identation.
Documentation.
Fixed details in the documentation.
NcmPowspecFilter: fixed indentation.
NcmPowspecFilter: doc. improvement.
NcmPowspec: reference to function NcmPowspecFilter in ncm_powspec_var_tophat_R ()
NcmPowspec: Fixed indentation.
NcmPowspec: doc. improvement.
Minor typo.
NcmODEEval: Fixed indentation.
NcmODEEval: doc. improvement.
NcmODE fixed indentation.
NcmODE doc. improvement.
NcmSpline2dBicubic: fixed indentation and tweak doc.

The documentation still needs lots of work.
Fixed minor typos.

Fixed indentation:

 * ncm_spline2d_spline.h/c
* ncm_spline2d_gsl.h/c

NcmSpline2dSpline and NcmSpline2dGsl doc tweaks.
NcmSpline2d: fixed indentation.
NcmSpline2d: Added Include and Stable tags + Minor tweaks.

Fixed indentation:

 * ncm_fftlog_tophatwin2.h/c
* ncm_fftlog_gausswin2.h/c

NcmFftlogTophatwin2 and NcmFftlogGausswin2: doc. improvement.
Fixed indentation: ncm_powspec_corr3d.c/h.
NcmPowspecCorr3d: doc. improvement.
NcmFftlogSBesselJ: fixed description and minor tweaks.
NcmFftlogSBesselJ: tiny tweaks in the description.
Fixed indentantion.
NcmFftlogSBesselJ: corrected indentation.
NcmFftlogSBesselJ: documentation improved.
Fixed wrong lower bound for abstol.
Removed old test in autogen.sh and overwritting of gtk-doc.make.
Add gtkdoc related files (instead of soft links).
Added to repo all necessary m4 files.
NcmGrowthFunc: doc tiny tweaks
NcmFftlog: corrected indentation.
NcmFftlog: documentation's minor improvement.
Tweaking NcGrowthFunc documentation and fixed wrong link for NcmSplineFunc.
NcGrowthFunc: changed description to a vague explanation on the initial conditions. Added Martinez and Saar book on the references.
NcGrowthFunc: corrected indentation.
NcGrowthFunc: improved documentation.
NcDistance: Standardization of function documentation
```
 *_free.c
*_clear.c
*_ref.c
```
NcDistance: modified two static functions names:
```
 * comoving_distance_integral_argument -->
```
_comoving_distance_integral_argument * dcddz --> _dcddz
NcDistance: corrected indentation.
NcmDistance: improved documentation.
Testing support for gcov.
ncm_timer.* - correct indentation with uncrustify.
NcmTimer: improved documentation.
Corrected a broken link in short description.
Indentation using uncrustify.
Improved documentation from NcmRNG.
Changed "abs" --> "abstol" in ncm_ode_spline_class_init. Also some minor changes.
Improved #NcmOdeSpline documentation.
Using different branch in CLMM.
Added colossus to Dockerfile-clmm-jupyter.
Version 0.15.0
Corrected indentation of ncm_ode_spline.*

[DOC] Improved main and enum description.

 * ncm_spline_func.h
* ncm_spline_func.c

Removed punctuation from parameter descriptions:

 * ncm_spline.c
* ncm_spline_cubic_notaknot.c
* ncm_spline_gsl.c

Removed punctuation from parameter descriptions in ncm_matrix.h/c.
Removed punctuation from parameter descriptions. Added bindable function to NcmSplineFunc.
Added description/documentation to ncm_spline_func.h/c

Corrected missing link in NcmC.
Fixed minor bugs.
Added part of doc from spline_func module.
Included "@stability: Unstable" and "@include: numcosmo/math/ncm_spline_rbf.h".

Added NcmSplineRBFType enum description.

Added doc in function ncm_spline_rbf_class_init (g_object_class_install_property).
Added NcmSplineGslType enum description.

Added doc in function ncm_spline_gsl_class_init (g_object_class_install_property).

Corrected indentation of ncm_spline_gsl.c & ncm_spline_gsl.h with uncrustify.
Added "@stability: Stable" and "@include: numcosmo/math/ncm_spline_cubic_notaknot.h".

Corrected indentation of ncm_spline_cubic_notaknot.c & ncm_spline_cubic_notaknot.h with uncrustify.
Corrected indentation of ncm_spline_cubic.c and ncm_spline_cubic.h with uncrustify.
Added doc to functions: * ncm_spline_is_empty * ncm_spline_class_init (g_object_class_install_property)

Correct indentation of ncm_spline.c and ncm_spline.h with uncrustify.

Added doc in functions ncm_vector_class_init & ncm_matrix_class_init.

/**
* NcmMatrix:values:
*
* GVariant representation of the matrix used to serialize the object.
*
*/

And the same for NcmVector.

Some minor tweaks:

 * ncm_matrix.c
* ncm_matrix.h
* ncm_vector.c

Passed ncm_matrix.h and ncm_matrix.c through uncrustify to set indentation.

Added doc to the following functions of NcmMatrix:

 * ncm_matrix_get_array
* ncm_matrix_fast_get
* ncm_matrix_fast_set
* ncm_matrix_gsl
* ncm_matrix_const_gsl
* ncm_matrix_col_len
* ncm_matrix_row_len
* ncm_matrix_nrows
* ncm_matrix_ncols
* ncm_matrix_add_mul
* ncm_matrix_cmp
* ncm_matrix_cmp_diag
* ncm_matrix_dsymm
* ncm_matrix_set_colmajor
* ncm_matrix_get_diag
* ncm_matrix_set_diag
* NCM_MATRIX_SLICE
* NCM_MATRIX_GSL_MATRIX
* NCM_MATRIX_MALLOC
* NCM_MATRIX_GARRAY
* NCM_MATRIX_DERIVED

Also deleted NcmMatrix struct doc.

[v0.15.0]

Version 0.15.0
Polishing nc_halo_density_profile. Added NumCosmo x Colossus comparison notebook.
Fixed missing parameter doc.
Updated test test_nc_wl_surface_mass_density.
Better integration strategy for NcHaloDensityProfile. Updated test test_nc_halo_density_profile.
Final tweaks before release.
Minor improvements in notebooks/BounceVecPert.ipynb.
Added new profile (Hernquist), Einasto implementation is now complete. Added documentation.
Improved notebooks/BounceVecPert.ipynb.
Removed old nlopt header in csq1d.
Fixed indentation and conditional load of NLOPT library object.
Implemented Einasto profile (just rho, not the integrals). Included the funciton to compute the magnification.
New refactored NcHaloDensityProfile (working in progress). Added support for different internal checkpoints in NcmModel.
Added numcosmo's uncrustiify settings.
Uniform indentation.
Uniform indentation.
Homogenization and standardization of the #NcmVector module.

A bunch of minor changes, .e.g. all #NcmVector are @cv now. Minimal changes in some docs.

Added description at enum NcmVectorInternal.
Uniform indentation.
Finished first version of #NcmVector documentation. Still needs a careful check.
Renamed NcDensity* objects to NcHaloDensity*.
Added "@stability: Stable" and "@include: numcosmo/math/ncm_c.h" to section in ncm_c.c.
Fixed use of Planck likelihood without check_param. Fixed typo in numcosmo/math/ncm_c.c.
1. Changed function name: ncm_c_hubble_cte_planck_base_2018 to ncm_c_hubble_cte_planck6_base.
2. Added doc to functions: * ncm_c_blackbody_energy_density * ncm_c_blackbody_per_crit_density_h2
3. Corrected units in functions ncm_c_h() and ncm_c_hbar(): Js^{-1} to Js.
4. Deleted last function ncm_c_radiation_h2Omega_r0_to_temp Not used anywhere.
Now the last commit is correct.
- ncm_c_crit_density_h2
- ncm_c_crit_mass_density_h2
1. Deleted function from #NcmC:
  - ncm_c_hubble_cte_msa - it was not applied anywhere.
2. Replaced function from #NcmC: * ncm_c_hubble_cte_wmap H0 = 72 --> ncm_c_hubble_cte_planck_base_2018 H0 = 67.36
3. Replaced ncm_c_hubble_cte_wmap to ncm_c_hubble_cte_planck_base_2018 in functions from module #NcHIcosmo* * nc_hicosmo_de * nc_hicosmo_gcg * nc_hicosmo_idem2 * nc_hicosmo_qconst * nc_hicosmo_qgrw * nc_hicosmo_qlinear * nc_hicosmo_qspline
4. Added Planck reference in references.bib and references.tex
5. Added docs in functions from #NcmC: * ncm_c_hubble_cte_planck_base_2018 * ncm_c_hubble_radius_hm1_Mpc * ncm_c_crit_number_density_p * ncm_c_crit_number_density_n
1. Changed documentation to the following #NcmC module functions:
  - ncm_c_wmap5_coadded_I_K
  - ncm_c_wmap5_coadded_I_Ka
  - ncm_c_hubble_cte_hst
2. Added documentation to the following #NcmC module functions: * ncm_c_wmap5_coadded_I_Q * ncm_c_wmap5_coadded_I_V * ncm_c_wmap5_coadded_I_W

Added documentation to the following #NcmC modules functions:

 * ncm_c_wmap5_coadded_I_K
* ncm_c_wmap5_coadded_I_Ka
* ncm_c_hubble_cte_hst

Documented function ncm_vector_len.
Better expansion for tan(x+d)-tan(x) for small d.
Fixed corner case in numcosmo/model/nc_hiprim_atan.c.
Fixed MPI in hdf5 incompatibility.
Removed update option on homebrew.
Fixed error handling, clik returns wrong values when an error occurs (due to a wrong usage of forwardError), to fix this we changed the likelihood to return m2lnL = 1.0e10 whenever clik returns an error.
Workaround to fix travis ci bundle issue.
Removed wrong free in CLIK_CHECK_ERROR.
Updated old m4 files and building system to keep them updated in the m4/ folder.
New MPI server (in progress). NcDataPlanckLKL no longer kills process when clik returns an error (just sends a warning).
Better OpenMP (and others) number of threads control.
Finished update to 2018 Planck likelihood (in testing).
Updates in the notebook.
Fixed sprintf related warnings.
Removed typo.
Fixing new docs build process...
Fixing error messages in plik. Working on doc building process.
Fixing new docs build process...
Reorganized docs building process.
Testing travis-ci on osx.
Testing travis-ci on osx.
Testing travis-ci on osx.
Testing travis osx.
Fixed doc typos. Testing travis on osx.
Fixed doc in NcDensityProfile. Testing travis ci on osx.
Updated sundials to version 5.1.0. Fixed somes tests and updated to TAP.
Update MagDustBounce.ipynb from Emmanuel Frion.
Minor updates and annotation improvements.
Copy all examples in Dockerfile-clmm-jupyter.
Updated notebooks and Dockerfile-clmm-jupyter.
New parametrization for CSQ1D, updates in BounceVecPert.ipynb and MagDustBounce.ipynb.
Several improvements in MagDustBounce.ipynb.
New NcHICosmoQRBF model.
Added options to logger function to redirect all library logs.
Testing CLMM+NumCosmo notebook.
Removed debug print.
Fixed documentation error.
Added missing scipy for CLMM.
Added missing Astropy for CLMM.
Cloning the right branch from CLMM.
Copying examples from CLMM to work.
Added COPY from opt.
Fixed build script name...
Testing different build order.
Testing build from git.
New Dockerfile for CLMM comparison.
Updated to CODATA 2018. Reorganized density profile objets (in progress).
Fixed test test_nc_ccl_dist.c, decreased number of tests in test_ncm_fftlog.c and test_ncm_mset_catalog.c. Testing ncm_csq1d.c. Updated binder/Dockerfile.
Adding missing notebooks to _DATA.
Updated binder notebook.
Removed debug messages in CSQ1D.
Minor fixes and new notebook.
Missing notebooks in Makefile.
Updated image used by binder.
Tweaking notebooks.
Included two notebooks.
Testing different methods to deal with zero-crossing mass.
New tutorial notebooks.
Modifying density profile objects. E.g., including more mass definitions.
Using the full SHA hash.
Testing a mybinder using a Dockerfile.
Testing methods to integrate regular singular points.
Testing docker jupyter notebooks
Testing docker jupyter notebooks
Testing docker jupyter notebooks
Testing docker jupyter notebooks
Testing docker jupyter notebooks
Testing docker jupyter notebooks
Testing docker jupyter notebooks.
Added support for matplotlib and scipy in the docker image.
Updated to python3 on Dockerfile.
Working on Dockerfile.
Working on Dockerfile.
Added necessary dist.prepare to examples.
Working on Dockerfile.
Working on dockerfile.
Updating Dockerfile.
Fixed lgamma_r declaration presence test. Fixed glong/gint64 mismatch.
Added detection for lgamma_r declaration and workaround when it is not declared but present (usually implemented by the compiler).
Fixed many documentation bugs (in most part by adding GTK_DOC_IGNORE to the inline sections).
Added the GSL 2.2 guard back to where it was really necessary.
Fixing documentation bugs.
Removed old GSL guards from tests.
Added prepare_ functions on NcWLSurfaceMassDensity object. Added necessary prepare calls to tests.
Support for gcc 9 in macos.
Added missing header.
Fixed inlined sincos to use default c keywords.
Changed inline macro to the actual keyword in config_extra.h.
Several updates and fixes.
- Updated config.h, now it includes config_extra.h that contains local compile only functions necessary to NumCosmo.
- Updated function_cache to a proper object.
- New NcmCSQ1D object that implemest the complex structure quantization method.
- New macro to control inlining (Glib's deprecated their).
- Updated inlining macro at all necessary headers.
Added rcm to ignore list in docs.
Added missing CPPFLAGS for HDF5.
Testing HDF5 in ubuntu.
Fixing missing doc. Testing HDF5 in ubuntu.
Fixed bug in preparing a fparams_map with no free variables.
Removed fitting test in APS.
Testing APS.
Fix pitch.
Improving edge cases and validation.
New validation on mset.
Removed old debug/test print in class.
Updated and reorganized SNIa catalogs support. Added Pantheon.
Working on new Boltzmann code.
Working on new Boltzmann code.
Set up CI with Azure Pipelines

[skip ci]
Fix transport vectors.
Fixed instrospection tags.
Fix email.
Updated to new sundials interface.
Updated Planck likelihood code (not tested).
Minor changes in HIPrimTutorial.ipynb. Updated ccl interface.
Minor modifications related to some tests comparing with "Cluster toolkit".
New function to update Cls.
Minor improvements.
Added missing test file.
Fixed indentation.
New object NcmPowspecCorr3d (for the moment computes the simples 2point function). Moved filter functions from NcPowspecML to NcmPowspec. Improved bounds sync in Halofit.
Update README.md
Converting python examples to jupyter notebooks.
New Nonlinear Pk tests. Finished nc_powspec_mnl_halofit encapsulation (private members).
Fixes xcor to work with sundials 4.0.1.
Updating to new sundials API.
Updating to the new sundials API.
Fixed conditional use of OPENMP (mainly for clang).
Fixed merge leftovers.
Several improvements in the new Boltzmann code (pre-alpha). Minor fixes.
Reorganized the hipert usage of bg_var. Moved gauge enumerator to Grav namespace.
Added support for system reordering to lower the bandwidth. New component PB photon-baryon and gravitation Einstein.
New abstract class describing first order problems. Fixed enum type names.
New abstract class to describe arbitrary perturbation components.
First commit of new perturbation module.

[v0.14.2]

Final tweaks for the v0.14.2 release.
Working on ccl vs numcosmo unit tests. Minor improvements.
Minor version update 0.14.1 => 0.14.2.

Minor improvements in ncm_ode_spline.
Added missing header (in some contexts).
Fixed aliasing problem in ncm_matrix_triang_to_sym. Removed log info from travis-ci.
Fixing doc issues, added missing docs. Better debug message for ncm_matrix_sym_posdef_log. Fixing travis-ci.
Added debug to travis-ci. Included sundials at the ignore list for documentation.
Removed no python option in numpy.
Lapack now is required, added openblas and lapack to travis-ci. Added no-undefined (when available) to libnumcosmo.
Added redshift direction tolerance for NcmPowspecFilter. New unit test CCLxNumCosmo test_nc_ccl_massfunc.
Finished upgrade to CLASS 2.7.1. Added option to hide symbols of dependencies. Finished CCL tests for background, distances and Pk (BBKS, EH, CLASS). Minor tweaks.
Updated CLASS to version 2.7.1.
Fixed a typo in the transverse distance. Test distances: Nc and CCL.
Missing unit test file.
Added warning for initial point in minimization not being finite.
Added support for CCL, first unit test for NumCosmo and CCL comparison. Minor improvements in NcHIQG1D.
Missing file.
Moved to xenial in travis ci.
Removed backports repository in travis-ci (it no longer exists...), waiting for something to break.
Removed sundials as dependence in travis-ci.
Updated to new sundials version -- 4.1.0.
Updated directory structure to match that of the new version (4.1.0).
Encapsulating sundials version 4.0.2. Many additions and improvements.

Reorganized all ode interfaces to match last sundials release. Testing a new abstract ODE framework (NcmODE*). New lapack functions added and old functions migrated to use NcmLapackWS. New matrix tests (also migrated to the newer unit test interface). New matrix log and exp functions added. Testing the fit of the whole covariance matrix in NcmStatsDistNdKDEGauss. Several minor improvements.
Added calibration objects for the reduced shear.
Working on the new ODE interface.
Fixed version mismatch.
Added back support for sundials 2.5.0 (as used by Ubuntu trusty).
Better support for Sundials versions, now it detects the version automatically. Minimum Sundials version is 2.6.0, minor updates to codes using Sundials.
New sampling options for NcmMSetTransKernCat object, testing new sampling options in test_ncm_fit_esmcmc.
Removed non-unsed typedef.
Removing unecessary headers.
New test to determine the burnin phase (better fitted for low self-correlation samplers).
Travis OK, removing log.
Travis...
Still testing travis.
Testing travis builds.
Fixing travis syntax.
Triggering travis.
Cleaning and updating NcmHOAA, fixing travis ci bug in mac os.
Fixed mac os image.
Testing travis ci, mac os config.
Debugging travis glitch in mac os.
Updated travis.yml to match new environment (again...)
Fixed minor documentation bugs.
Added new header for fortran lapack functions prototypes.
Added conditional macro compilation of the new suave support in Xcor.
New walker `Approximate Posterior Sampling' APS based on RBF interpolation using (NcmStatsDistNdKDEGauss).
Trying a different approach for the new walker.
Tests for the multidimensional kernel interpolation/density estimation object.
Added two codes for quadratic programming gsl_qp (gsl extras) and LowRankQP (borrowed from R). New ESMCMC walker Newton (does not work as expected, transforming in another sampler in the next commit). New multidimensional kernel interpolation/density estimation for arbitrary distribution (abstract interface and gaussian kernel implementation).
Removed an exit() in example_diff.py. Added support for new version for sundials.
Support for the new Sundials version.
Updated tests for the new interface for lnnorm computation (including error).
New tool for trimming catalogs, fixed typos in parameters names in NcHIPrim*. Fixed error estimation in the posterior normalization.
Fixed minor issues from codacy.
Fixing macos+travis issue.
Removed old includes in tests. Added debug in travis.
Moved MVND objects to main library code. Improved estimates of the Bayes factor, included new unit tests.
Change tau range. My tau definition is different from root (CERN) code. Voigt profile.
Fixed: updated deprecated glib functions. Included new Sundials version in configure.
Fixed and tested (against CCL) the galaxy weak lensing module inside XCOR.
Testing PITCHME.md
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New PITCHME.md presentation. Tweaks on pydata_simple example. Minor bug fixes.
Included missing property "dists" (Photo-z distributions) in class_init.

Included NcDataReducedShear... and NcGalaxyRedshift... in ncm_cfg.c
Included other variable types to be read from hdf5 catalog.
Added a fix to avoid setting null sparam-array.
Proper serialization of model with modified parameter properties and no reparametrization.
Fixed stupid bug.
Turned backport function static to avoid double definition.
Add option to choose parameter by name in mcat_analize.
New options on mcat_analize to control dump. Updated parameters range in nc_hicosmo_de and nc_hicosmo_lcdm.
Fixed missing doc.
Finished ESMCMC MPI support.
New bindable ncm_mset_func1 abstract class. Included function array in example_esmcmc.py. Fixed bug in function array + ncm_fit_esmcmc + MPI.
Fixed flags search when using ifort/icc. Added missing objects registry.
Added guard to avoid parsing blas header during g-ir-scanner.
Moved HDF5 LDFLAGS to LIBS.
Re-included gslblas inclusion/removal in configure.ac.
Included additional sundials library to LIBS.
Inverted header order to avoid clash with CLASS headers. Added backport from glib 2.54.
Better serialization of constraint tolerance arrays.
Safeguards in NcmVector constructors.
Fixing minor leaks.
Fixed initializer (to remove harmless warning).
Added conditional compiling of _nc_hiqg_1d_bohm_f.
Fixed MPIJob crash when MPI is not supported.
Fixed leaks in ncm_fit_esmcmc.c, ncm_mpi_job_fit.c and ncm_mpi_job_mcmc.c.
Updated tests and removed debug info from travis-ci.
Fixed blas detection (ax_check_typedef is broken! Now using AC_CHECK_TYPES).
Debugging travis-ci build.
Debugging travis-ci macos build.
Typo in blas enum detection.
Detecting lapack xblas functions availability. Fixing cblas headers in different scenarios.
Fixing BLAS headers compatibility.
Included new functions on NcWLSurfaceMassDensity: critical surface mass density, shear and convergence new functions are computed when the source plane is at infinite redshift.

Bug fixed in nc_data_reduced_shear_cluster_mass.c: the probability function of the reduced convergence is computed using the reduced shear at infinite redshift.
First working version of ncm_fit_esmcmc + MPI. Example pysimple updated.
First working version of nc_hiqg_1d.h (some speed-ups are still necessary).
Missing object files.
Renaming quantum gravity object.
Added a front-end for other lapack functions. Reorganized the blas header inclusion. Working in progress in ncm_qm_prop, last commit before removing different approaches code.
New examples and working in progress for NcmFitESMCMC and NcmMPIJobMCMC.
Finished support for complex messages in NcmMPIJob. Two implementations tested NcmMPIJobTest and NcmMPIJobFit. Working on NcmFitESMCMC parallelization using MPI.
Documentation.
Finished the first version of MPI support, including the helper objects NcmMPIJob*.
Trying different interpolation methods in ncm_qm_prop.c.
Workaround travis-ci problem.
Fixed test test_nc_wl_surface_mass_density.c.
Removed leftover headers in ncm_spline_rbf.c.
Updated example example_wl_surface_mass_density.py.
First working version of nc_data_reduced_shear_cluster_mass. Improvements in all related objects.
Added support (optional) to HDF5. New objects NcGalaxyRedshift, NcGalaxyRedshiftSpec and NcGalaxyRedshiftSpline to describe galaxy redshift distributions. Included support for loading hdf5 catalog in nc_data_reduced_shear_cluster_mass.
Fixed bug: ncm_util_position_angle was returning -(Pi/2 - theta). Corrected to return theta.
Removed printf in great_circle_distance function.
Implemented the position_angle and great_circle_distances functions.
Included new lapack encapsulation functions. Trying different methods in NcmQMProp. New 1D interpolation object NcmSplineRBF.
Removed unnecessary range check in gobject parameter properties. Working on ncm_qm_prop.
Added function eval_full to nc_xcor_limber_kernel.
Added missing conditional compilation of MPI support.
First tests of MPI slaves.
Testing different autoconf mpi detections.

[v0.14.1]

Removed deploy and less verbosity on make.
Removed extra header.
New version 0.14.1.
Included link for parallel linear solvers in sundials. Fixed bug in nc_cbe (lensed CMB requirements).
Updated examples to python3. New object nc_galaxy_selfunc. Working on ncm_qm_prop.
Fixed possible (impossible in practice) overflow in background.c. Added support for binder.
Fixed several documentation glitches.
Finished support for Planck lensing likelihood.
Created data object NcDataReducedShearClusterMass. Work on progress.
Fixed bug in ncm_spline.h. Working on ncm_qm_prop.
Included properties. Work in progress.
Improved regex that greps SUNDIALS_VERSION in configure.ac.
Working on example_qm.c, removed old file from numcosmo-docs.sgml.in, added quotes to SUNDIALS_VERSION grep in configure.ac.
Implementing object to estimate mass from reduced shear. Work in progress.
Fixed data install path. Tweaked fit tests.

[v0.14.0]

Fixed data install path. Tweaked fit tests.
NumCosmo version written by autoconf in numcosmo-docs.sgml.
Updated print in python scripts.
Fixed deploy file.
Bumped version and updated ChangeLog.
Tweaking tests.
Fixed new package (in progress).
Implementing ncm_data_voigt object: work in progress
Workaround for older sundials bug (2).
Tweaking tests and workaround for older sundials bug.
Fixed missing prototype and numpy on travis-ci.
Tweaking tests.
Minor fixes (portability related).
Improved error msgs in ncm_spline_func.c. Working on ncm_qm_prop.
Working on ncm_qm_prop.
Working on ncm_qm_prop.
Conditional compilation of NcmQMProp.
New test QM object.
Created three tests: distance, density profile (NFW) and surface mass density.

Distance: Implemented functions to compute the comoving and transverse distances from z to infinity

DensityProfileNFW: fixed bugs, tested

NcWLSurfaceMassDensity : implemented functions like convergence, shear and reduced shear... all funtions tested using NFW density profile.

Included example for NcWLSurfaceMassDensity.
Fixed log spacing.
Fixed parameter ranges.
Improvement in example_hiprim_Tmodes.py. Minor fixes. Added C(theta) calc in ncm_sphere_map.h.
Updated default alpha in nc_snia_dist_cov.h.
Fixed error in reading m2lnp_var from catalog file.
Added option to calculate evidence in mcat_analyze.
Added volume estimator testing to test_ncm_fit_esmcmc (fixed bug in vol estimation when the catalog contains repeated points).
New code for Bayesian evidence and posterior volume and its unit tests.
Better parameters for test_ncm_sphere_map.c.
Renamed test to match the new object name.
Encapsulated the NcmMSetCatalog object. New NcmMSetCatalog tests.
Removed travis-ci brew science tap.
Working on wl related objects (in progress).
New test test_ncm_fit_esmcmc.c. Fixed solar/G consistence.
Travis-ci backports (removed debug).
Travis-ci backports (debug1).
Travis-ci backports (debug).
Travis-ci backports.
Travis-ci backports.
Travis-ci backports.
Travis-ci backports.
Testing backports in travis-ci.
New test for NcmFit. GSL requirement changed to 2.0. Old code related to older gsl versions removed. New NcmDataset constructor. Updated NcmFitLS.
Removed old doc file.
Finished sphere_map. Removed old codes. Added support fo sundials 3.x.x.
Finished organizing and further folding of the sphere_map map2alm algo.
Fixing gcc install issue in macos/travis-ci.
Finished organizing code.
Fixed old sphere/ scan in docs. Split block algo from main code in ncm_sphere_map.c.
Renamed new sphere map object: NcmSphereMapPix -> NcmSphereMap.
Removed old Spherical Map/Healpix implementation.
removed clang support in travis-ci.
Travis...
Travis...
Still fixing travis...
Trying to fix openmp+clang problem in travis.
Adding openmp cflags to the introspection cflags.
Removed march from the options added zhen using --enable-opt-cflags. Removed debug messages from ncm_sphere_map_pix.c. Updated ax_gcc_archflag.m4. Testing clang options for travis-ci.
Finished block opt for sphere map pix.
Updates.
Improvements in NcmSphereMapPix (optimization of alm2map in progress).
Finished alm2map (missing block algo).
Finished block algorithms and tests.
Finishing new block interface for SF SH. Added tests for SF SH.
Updated m4/ax_cc_maxopt.m4 and m4/ax_gcc_archflag.m4. Working on optimization of ncm_sphere_map_pix.
Optimizing code (unstable).
Missing m4 in some platforms.
Testing new optimizations, new Spherical Harmonics object, finishing sphere_map object.
New example NcmDiff.
Applied fix (gtkdoc/glib-mkenums scan) to the ncm namespace.
Fixed gtkdoc/glib-mkenums scan problem.
Added a guard to avoid introspection into wrong headers. Solving the enum parsing erros/warnings (glib's bug).
Update deprecated glib function.
New kinetic w function.
Updated scripts/corner.py, new acoustic scale in Mpc function in NcDistance.
Documentation.
New option to print out functions in mcat_analyze. Fixed minor bug in plot2DCorner.
Reordered fortran probing in configure.ac (fix problems in some weird gcc installations).
Removed two prints and p-mode member. Included test of the x and y (splines) bounds to compute m2lnL (bao empirical fit 2D).
Added Bautista et al. obj in the Makefile.
Corrected typo on the documentaion.
Removed log printing.
Fixing instrospection in macos.
cat config.log in travis ci.
Fixing macos build.
Still trying to fix maxos build.
Implemented NcmDataDist2d: data described by two-variable (arbitrary) distribution.

Implemented NcDataBaoEmpiricalFit2d: included Bautista et al. 2017 data (SDSS/BOSS DR12).
Testing travis ci.
Trying fix numpy install using brew.
Right order.
overwrite option added to numpy at travis ci.
Added numpy to brew install in travis ci.
Added condition on having fftw to the unit test.
Minor tweaks. Improved NcmFftlog and added unit testing. Updated NcmABC and NcABCClusterNCount.
Update py_sline_gauss.py

fixing dsymm call to met the new arguments order.
Update py_sline_gauss.py

Fixing dsymm parameters order
Finished objects infrastructure.
Added tests for inverse distribution computation.
Improved ncm_stats_dist1d, including new tests in test_ncm_stats_dist1d_epdf.
Comment Evrard's formula for ST multiplicity.
Minor tweaks.
Improving ncm_stats_dist1 (not ready!)
Fix minor bugs.
Minor tweaks.
New structure for NcDensityProfile and NcDensityProfileNFW objects. They must implement more functions, which are used to compute the Weak Lensing (WL) surface mass density, WL shear... Work in progress! Not tested.

New object: NcWLSurfaceMassDensity. Work in progress! Not finalized nor tested.

Property included in NcmStats2dSpline to indicate which marginal to be computed.
Added arxiv numbers.
Fixed doc.
Fixed freed null pointer in NcmReparam.
Removed debug message in darkenergy. Fixed minor leaks.
Implemented framework for Fisher matrix calculation. Finished implementation of general Fisher matrix calculation for NcmDataGauss* family. Organized methods of NcmFit to calculated covariance through observed or expected Fisher matrix. Added new methods for NcmMatrix.
Improved error handling in NcmDiff.
Removed old ncm_numdiff functions. Updated code to use the new NcmDiff object.
Fixed minor typos. Included NcmDiff use in NcmFit.
Improved documentation of NcHICosmoVexp. Added paper Bacalhau et al. (2017). Corrected typo on the documention of ncm_stats_dist2d.c.
New NcmDiff object that contains all numerical differentiation in a organized framework. Improved ncm_assert_cmpdouble test and error message.
Included more BAO points in the example. Minor modifications on the plot.
Created abstract class and one child to compute reconstruct an arbitrary two-dimensional probability distribution. Work in progress!
New smooth bpl model.
Documentation completed. Included PROP_SIZE in the stats_dist1d enumerator.
Removed debug message.
New Spherical Bessel FFTLog code.
Minor tweaks.
Improved the documentation on both hiprim examples.
Improved the documentation.
NcRecomb documentation is completed.
New full C example.
Few improvements on the recombinatio figures, new format svg.
Documentation and figure improvements.
Example better documented, plots added and small bugs fixed.
Fixed example name in Makefile.am
New example.
Modified the file name, included the computation of the halo mass function. All figures are in svg format.
Fixed mixing http/https in docs. Removed old doc from README.
Fixed manual url.
Updated automake and some examples, removed old docs (merged into the new site).
Added the initial and final masses and redsfhits as properties in the NcHaloMassFunction object.
Renamed the DE model Linder and Pad to CPL and JBP, respectively.

Documentation improvements.
Documentation.
Fixed doc typo.
Removing old docs (merging all docs in a single place). Fixed bugs in recomb_seager.
Qlinear and Qconst -- documentation completed.
Documentation improvements.
Fixed log typo.
Added restart run in NcmFit. Added restart option in darkenergy. Reorganized NcRecomb and added tau_drag functions.
Removed typo from data file.
Removed -u option in cp since this flag is missing on macos.
Fixed doc typo and adjusted OmegaL range in HICosmoDE.
Improved the documentation for the xcor module and data object.
Fixing doc typos.
Adjusted r range and scale.
Implemented the object NcPowspecMLFixSpline: it computes the linear matter power spectrum from a file, which contains the knots k and their respective P(k) values.

Included PROP_SIZE in the enumerator of some objects. Small improvements on the documentation.
Added example with tensor contributions to CMB.
Fixed indentation and moved the interface (XHeII and XHII) to NcRecomb (as virtual functions).
Added functions in NcRecomSeager to evaluate XHII and XHeII.
Updated values using data from https://sdss3.org/science/boss_publications.php
Fixed data object.
Last tweaks after merging with WL branch.
Removed before merging with WL.
Last tweaks after xcor merge.
Removing old files, preparing for the merge with xcor.
Fixing indentation before merge.
Fixing indentation in ncm_data_gauss_cov.c
Tested and fixed the last ensemble check in NcmFitESMCMC.
Added last ensemble check to ESMCMC.
Removed trailing space in Makefile.am.
Fixed the dumb error in .travis.yml and the NcScalefactor GO interface.
Trying another way to find the right gcc in travis-ci+macos
Fixing travisci build in macos.
Checking error in macos build.
New interacting dark energy model IDEM2
New interacting dark energy model IDEM2
Removed spurious - in HOAA. Finished the addition of a new BAO point.
Fully working version of HOAA for tensor and scalar modes of the Vexp model.
New interaction dakr energy model IDEM2
Included new BAO data point: Ata et al. (2017), BOSS DR14 QSO catalog.
Code reorganization and examples improvements.
Found a good parametrization for HOAA and a method to avoid roundoff during the transitions.
Still testing parametrizations in HOAA.
Testing parametrizations in HOAA>
Working on reparametrization of HOAA during singular transitions.
NcHICosmoDE documentation (header file).
Improve the documentation of some functions such that the bindings can be properly created. For instance, @lnM_obs: (array) (element-type gdouble): logarithm base e of the observed mass.
Finishing HOAA cleaning and testing.
Documentation fix.
Tweaking examples.
New examples and improvements on Vexp and HOAA.
Test gcc detection in travis-ci.
Cleaning and organizing NcmHOAA.
Minor tweaks.
Trying travis ci releases.
Missing header in toeplitz.
Better status control on _ncm_mset_catalog_open_create_file.
Fixed bug when reading a catalog with wrong mset fmap.
Better output notation for visual HW.
Fixed wrong parameter call in visual HW and added an assert to ncm_stats_vec_ar_ess to avoid future error like this.
Using the ensemble mean when the catalog has more than one chain.
New visual HW test added.
Fixed ar_fit 0 order case.
Missing reset status.
Fixed string allocation.
Support for reading fits + incompatible mset file.
Typo in mcat_analize.
Fixed typo in assert.
Improved script.
Updated .gitignore to include backup files and others.
Better asserts.
Improved interface with gsl minimizers. Included restarting for mms algorithms.
Improved example.
Chains diag output fix.
Missing refs and typo.
Added new diagnostics to NcmMSetCatalog, max ESS and Heidelberger and Welch's convergence diagnostic.

Both can be applied to any NcmStatsVec object or through the NcmMSetCatalog interface. In the latter the test can be applied to individual chains, to the full catalog and to the ensemble average. Added an option to NcmFitESMCMC to automatically trim the catalog during an ESMCMC run using the diagnostics to estimate the best burnin. Added options to run the diagnostics to mcat_analize.
Not allowing travis to fail on osx.
Removed duplicate sundials on travis+osx.
Removed klu support on sundials for osx.
Added another no-warning flag.
Better compilers warnings switches.
Added new object to docs.
Adding new Toeplitz solvers to docs ignore list.
New Toeplitz solvers added. Improved NcmMSetCatalog and NcmFitESMCMC. Added new helper functions in several objects.
Building docs on linux .travis.yml
Trying gcc-6 in .travis.yml
Added support for gcov.
Trying to rehash in osx.
Updated old finite call in levmar, ignoring errors in travis+osx.
Fixed all plc warnings and minor bugs.
Removed gcc recomp in .travis.yml
Reordered commands in .travis.yml
Removed CC export in .travis.yml
Asserting that gcc will be used in .travis.yml
Adding science deps on .travis.yml.
Other osx deps.
Trying to install gfortran via brew for osx travis.
Adding gfortran dep to travis osx build.
Adding deps for travis+osx.
Removed wrong dist-hook.
Log on check and dist.
Testing MACOS build.
Testing macos support for travis. Fixed minor doc typos.
Removed travis log output.
Still fixing doc building in travis.
Missing texlive package for travis doc compilation.
Log try typo.
Testing doc building in travis.
Better make mensages in travis.
Added latex support for travis.
Building docs on travis.
Fixed type warning in tests/test_ncm_integral1d.c.
Fixing last clang related warnings.
Fixed another set of minors clang related bugs.
Fixed several clang warning related minor bugs.
Added return to avoid warnings. Fixed multiple typedefs.
Fix plc's Makefile.am.
Fixed typo.
Conditional use of warning flags depending on the compiler. Fixed abs -> fabs bug in Planck likelihood.
Changing to make check.
Missing deps.
Testing trusty.
Removed update line.
Trying lucid.
Testing deps.
Testing dependencies .travis.yml
Removed debug gtkdocize on .travis.yml
Improved autogen.sh to work with old gtkdoc (and without it!).
Testing gtk-doc + .travis.yml
Testing .travis.yml
Including dependencies.
Testing travis.yml.
Improvements on NcHICosmoGCG. Testing new MCMC diagnostics and NcmStatsVec algorithms. Including support for Travis CI.
Created functions to obtain the expected means and the observed values.
New GCG model. Testing new diagnostics tool for catalogs.
Connected the knots vector of Poisson data with mass_knots.
Implemented data object for cluster number counts in a box (not redshift space). It follows a Poisson distribution.

Implemented Crocce's et al. 2009 multiplicity function.

NcmData: Better hooks for begin function.

NcmDataPoisson: improved.
Using a warning instead of a assert in the final optimization test.
Testing better optimization finishing clean-up.
Created Crocce's 2009 multiplicity function.

Created Cluster counts data in a box (not redshift space). In progress.
Fixed dependency link bug.
Removed log from bflike_smw.f90.
Moved prepare if needed to nc_hicosmo_sigma8.
Increased parameters scale.
Fixed typos and increased parameters scales in NcHIPrim*.
Fixed typo and increased lambdac range in BPL.
Updated c2 variables.
Added support for weighted observations in ncm_stats_dist1d_epdf. Added tests for ncm_stats_dist1d_epdf. New sampling functions in NcmRNG.
Added current time to (ES)MC(MC) logs.
Added gtkdocize to autogen.sh.
Added autoreset of the acc when splines are reset. Fixed warnings in CLASS lensing.c.
Added doc.
Fixed NcClusterMassAscaso compilation errors.
Improved example, added a child of NcmDataGaussCov.
Added a new parameter to Atan HIPrim model. Better (de)serialization for NcmMatrix. New serialization to binary file. Improved examples.
Created new cluster mass (relation provided in Ascaso et al. 2016). Work in progress.
Included additional parameter at the autocorrelation time calculation.
Fixed nlopt search libs.
Updated NLOPT library name from PKG_MODULE.
Update Dockerfile
Update Dockerfile
Added support from partial reset (only autosaved objects) for NcmSerialize.
Fixed conditional compilation for old GSL.
Fixed bug in cubic spline and removed PKEqual debug messages.
Fixed typos and commented old code.
Fixed typo in references.bib
Added PKEqual for HaloFit+Linder parametrization.
Imported improvements from xcor branch.
New deg2 to steradian convertion factor.
Modified NcXcor to select method for Limber integrals at construction.
Created function to compute the p-value of a function, giving the upper limits of the integral of the probability distribution function.

Created option in mcat_analyze to compute the p-value of a function at different redshift values, giving the upper limits of the integral of the probability distribution function.
Correction to the Dockerfile for multi-threading.
Fixed a bug in Halofit
Fixed nc_hicosmo_de_reparam_cmb bug.
Switch xcor_limber integrals back to GSL (for now)
Updated Halofit (not tested yet)
Missing test file.
Fixed example neutrino masses. Fixed high-z neutrino calculations at NcHICosmoDE (needs improvement).
Missing doc tags.
Updated implementation flag on xcor.
Removed old files.
Added tests on CBE background. Pulled improvements on NcmSplineFunc from another branch. Improved speed on NcHICosmoDE using splines for massive neutrino calculations.
Fixed test.
Update examples to use massive neutrinos.
First tests OK. Working beta.
Fixed Omega_m usage.
Updated implementation flags code, and improving CLASS/NumCosmo comparison. TESTING VERSION!
CLASS updated to v2.5.0. Finishing massive neutrino interface and implementation on NcHICosmoDE.
Documentation NcmFit (in progress).
Replaced Omega_m0*(1+z)^3 by nc_hicosmo_E2Omega_m in several objects to take neutrinos into account.
Imported work in progress on NcHICosmoDE from xcor.
Working on singularity crossing.
WARNING : unfinished work on neutrinos in nc_hi_cosmo_de
Included GObject-introspection in the requirement list.
Improved massive neutrino interface. Split NcmIntegral1d.
Added missing author.
Imported Dockerfile from xcor.
Imported neutrino interface improvement from xcor branch.
Working on the massive neutrino interface.
Update Dockerfile
Update Dockerfile
Update Dockerfile
Update Dockerfile
Create Dockerfile
Initial commit for weak lensing branch.
Some debugging for interfacing neutrinos/ncdm with CLASS...
Added a minimal interface for massive neutrinos (will change in the near future), testing code. Simple implementation of this interface in NcHICosmoDE (not matching the CLASS background yet).
Work in progress Vexp, NcHICosmoAdiab and NcmHOAA.
Working version Vexp + HOAA + Adiab, it needs structure.
Typo corrections.
Added sincos detection to configure. New Harmonic Oscillator Action Angle variable object. Improvements on NcHICosmoVexp.
New Vexp model.
New mcat_join tool, it joins different catalogs of the same experiment.
Changed safeguard in nc_cbe
Missing doc tag.
Fixed indentation.
Organized and improved (testing phase).
Added a safeguard for halofit (Brent solver, in case fdf solver crashes).
Corrected a bug in halofit.
Corrected leaks in nc_data_xcor.c and modified ncm_data_gauss_cov.c in case of singular matrix.
Corrected some leaks in NcDataXcor.
Increasing maxsteps in xcor.
Modified xcor and halofit.
Fixed conflicts.
Fixed header name.
Corrections in xcor and cbe.
Fixed the close to the edge bug (emanating from CLASS).
Fixed inconsistencies.
Small fixes.
Increased output sampling of NcPowspecCBE to avoid interpolation errors.
Correction in nc_xcor.c and ncm_vector.h
Organizing code.
Organizing code.
Adding Xcor data objects.
Organizing and tweaking new Xcor objects.
Imported updated XCor codes. First tweaks and documentations fixes.
plop
Increased output sampling of NcPowspecCBE to avoid interpolation errors.
Correction in nc_xcor.c and ncm_vector.h
Organizing code.
Organizing code.
Adding Xcor data objects.
Organizing and tweaking new Xcor objects.
Imported updated XCor codes. First tweaks and documentations fixes.

[v0.13.3]

Updated changelog.
New changelog file.
Version bumped to 0.13.3.
Added smoothing scale to eval by vector function.
Added a smooth transition from non-linear to linear power spectrum for high redshift in halofit. Added the znl finder to obtain the redshift where we should stop applying the halofit.
Imported from xcor branch.
More stable safeguard.
Added get_tau from NcHIReion to MSetFuncList.
Added safeguard to minimization in ncm_stats_dist1d.
Removed debug printf in mcat_analyze.
Missing reference in nocite.
Small improvement on ncm_stats_dist1d_epdf and ncm_stats_vec. Included NEC on nc_hicosmo. Fixed core detection bug on configure.ac.
Included H(z) data: Moresco et al. (2016), arXiv:1601.01701.
Testing new algorithm in ncm_stats_dist1d_epdf.
Example with zt. Function to get cov from NcmFit.
Implemented function to compute the deceleration-acceleration transition redshift.
Improved reentrancy support when using ifort.
Added OPENMP flags log.
Included automatic flags for plc compilation. Fixed typo in ncm_fit_esmcmc.c.
Improved error handling.
Improved linear ps from CBE.
Log commented
Fixing docs typos and simple bugs.
Bug fixing.
Fixed setting mset parameters using vectors when some models have no free parameters.
Added H(z) data: Moresco (2015).
Removed verbosity at NcCBE.
Included BAO data: SDSS BOSS DR11 -- LyaF auto-correlation and LyaF-QSO cross-correlation. Modified nc_data_bao_dhr_dar.c to consider any number of data points.
New BAO object and new Sundials detection.

Included detection for the new Sundials version (2.7.0) in configure.ac. New BAO object based on D_M/r_d, H(z)*r_d estimates - SDSS BOSS DR12.
Updated the script mass_calibration_planck_clash.py, new funtion to include a gaussian prior. Corrected typos in the documentation.
Removed broken test for when old gsl is present.
Fixed double AC_CONFIG_MACRO_DIR.
Removed local link file.
Missing header.
Fixed g_clear_pointer workaround.
Fixing compiling bugs on opensuse.
Remove openmp flags from g-ir-scanner.
Another conditional compilation bug.
Fixed conditional include of ARKode.
Updated version.
Fixed max redshift in example_ca.py.
Updated examples.
Improved docs.
New ESMCMC example.
Fixed conditional threads compiling.
Missing ending string null.
Align.
Fall back to default files.
Conditional usage of gsl >= 2.2 functions.
Conditional use of gsl_sf_legendre_array_ functions.
Fixed docs typos.
Fixed doc typos. New catalog sampler NcmMSetTransKernCat. Removing warnings.
Added missing GSL support for darkenergy, updated mset_gen to generate mset with models and submodels.
Missing gsl link for mcat_analyze.
Missing glib link to darkenergy.
Explicity link to glib in tools.
Test for files in cbe_precision.
Add lock to fftw plans.
Working on NcHIPertWKB (in progress, unstable).
No modification in example_hiprim.py
Fix for dlsym on macos
Fixed header inclusion (new gsl stuff).
Included sigma8 in NcmMSetFuncList. Small adjustements. Working in progress in WKB.
Updating WKB module (work in progress).
Temporary debug prints.
Small improvements.
Finishing the alm2pix transform.
Improving outsource compiling
Improving outsource compiling
Improving outsource compiling
Improving outsource compiling.
Removed unecessary comment.
Reordered class and instance structs, now all objects declare first the class struct and then the instance struct.
Support for require maximum redshift in NcDistance.
Changed the maxium redshift requirement of Halofit to match the maximum asked not the maximum non-linear.
mcat_analyse now outputs the full covariance when --info is enabled.
Added skip in unbindable functions in nc_cluster_mass_plcl.c. Support for including function in ESMCMC analysis through darkenergy. Added support for evaluating NcmMSetFunc in fixed points.
Many improvements and additions.

Extended Serialize to work with some instances in different places. Reworked NcmMSetFunc to be an object including description and symbols related to the function it calculates. NcmMSetFuncList introduces an generic catalog containing NcmMSetFunc from any observable. An initial list from NcHICosmo and NcDistance was already created, more to come. Reworked NcmPrior on top of NcmMSetFunc, now it can be serialized and saved to disk. Now priors can be implemented directly in Python. New generic abstract objects NcmPriorFlat and NcmPriorGauss. Improved TwoFluids objects and examples to match last paper equations of motion arXiv:1510.06628 (Work in progress). Moving all pixalization and spherical harmonics decomposition related code to NcmSphereMapPix (Work in progress). New tests on NcmSphereMapPix (test_ncm_sphere_map_pix). NcmObjArray now supports saving and loading from disk. New NcmObjArray tests.

Several minor improvements.
Create README.md listing and describing the scripts. Included script mass_calibration_planck_clash.py (ref. arXiv:1608.05356).
Updating TwoFluids perturbation object, working in progress.
References included - documentation in progress.
Finalizing NcmSphereMapPix (including spherical harmonics decomp).
Peakfinder functions were rewritten in terms og GSL functions, therefore the objects NcClusterMassPlCL and NcCluster PseudoCounts no longer depend on the Levmar library.

Documentation in progress: README, dependencies.xml, NcmSpline, NcmPowspecFilter, NcmFftlog.
New reorganized NcmSphereMapPix object.
Reorganizing quaternions and spherical map objects.
Removed debug messages.
Added support for ARB and included ARB calculation of NcmFFTLogTophatwin2. Fixed minor bug in FFTLog.
Documentation: work in progress.
Removed debug print.
Finalized the inclusion of NcPowspecMLNHaloFit and adaptating to NcmPowspecFilter. Added support for derivatives in NcmSpline2dBicubic.
Removed debug print from exaple_ps.py
Growth function adjusted in NcPowspecMLTransfer (~1.0e-4 precision comparing Class and EH at z = 0).
Removed old powerspectrum from NcHICosmo and moved everthing to NcHIPrim. All objects were adapted accordingly. (Work in progress!)
Documentation: ncm_fftlog, ncm_fftlog_gausswin2, ncm_fftlog_tophatwin2
Documentation: nc_cbe, nc_powspec, nc_powspec_ml, nc_powspec_ml_cbe, nc_powspec_ml_transfer
Updating NcHaloMassFunction to use the new NcmPowspec family.
Renamed NcMassFunction to NcHaloMassFunction
Reorganizing fftlog object, added calibration method to adjust the number of knots. New PowspecFilter object to apply filters (curretly gaussian or tophat) to any powerspectrum. Modifying example_ps.py (not ready yet).
Functions implemented: nc_cluster)mass_plcl_pdf_only_lognormal and nc_cluster_pseudo_counts_mf_lognormal_integral.
Minimal README for the python example.
Documenting python children objects.
Better doc in python example.
New Monte Carlo example. Relaxed Serialize to deal with python derived objects. New GObject frontend to random number generation functions.
Python mcmc example.
New external code Faddeeva for error function calc. New python example. Improved bandwidth in NcmStatsDist1dEPDF.
Missing data file.
New Hubble H_0 data Riess2016. Added helper function for CMB reparam.
Updating documentation: README, dependencies and compiling
New HIPrim models (broken power law and exponential cut).
Pseudo counts parametrized in terms of lnMcut, instead of lnTx.
Plot scripts update due to numpy modifications.

Cluster pseudo counts - new variable Tx (substituting the old one - Mcut).
First tests with Planck polarization likelihood.
Added support for TE EE data from Planck likelihood.
Bug fix in ncm_fit_esmcmc_walker_stretch.
Added missing object registry.
New reparametrization nc_hicosmo_de_reparam_cmb and nc_hiprim_atan. Better handling of border cases in ncm_fit_esmcmc_walker_stretch.
Improved parallelization of NcMatterVar by removing a mutex. Fix bug in NcClusterPseudoCounts. Improved border handling in NcFitESMCMCWalkerStretch.
Cleaning wrong annotations, added individual shrink factors calculation in mcat.
Update parameter in ncm_mset_catalog to improve the shrink factor calculation.
Implemented selection function considering the relation between X-ray temperature and true mass. Defined new parameter: NC_CLUSTER_PSEUDO_COUNTS_LNTX_STAR_CUT

Example example_hiprim.py has a bug.
Support for changing kmax and kmin in NcPowspecMLCBE.
Missing file.
New NcPowspecMLCBE for extracting linear matter power spectrum from CLASS. Trying new walkers (and options) for ESMCMC. New options for ESMCMC added to darkenergy. New example example_ps.py of how to use new NcPowspecML objects. Organized code in NcTransferFuncEH.
File simple corner.
Removing pyc files.
Fixing objects definition order (just cosmetics). Improving NcmMSetCatalog (now supports printing ensemble time evolution). Designing new NcmCalc abstract object.
Added plot scripts.
A typo and a leak.
Restructured NcmFitESMCMC.

Now NcmFitESMCMC supports different walkers through NcmFitESMCMCWalker interface. Both serial and parallel versions produce the same result.

mcat_analize calculates now the integrated autocorrelation time with the -i option. darkenergy support for Planck data.
Fixed bug in mcat_analyze.c.
Imposed the same out-of-interval prior in both serial and parallel modes.
Moved back the default value of the parameter A of NcmFitESMCMC to 2.
Several fixes and improvements.

New quantile support in ncm_stats_vec (using gsl implementation). Improved synchronization robustness for NcmMSetCatalog. Modified ncm_stats_dist1d_epdf to use silverman's rule of thumb to calculate the bandwidth. Added support to Planck likelihood usage through darkenergy. Made clik_gibbs_f90 thread safe to avoid multithread conflicts.
Finished NcmIntegral1d first interfaces for Hermite and Leguerre like integrals. Added a new test for NcmIntegral1d.
Updated dependency on glib to version 2.32.0 and cleaned old legacy code.
Added Gauss-Hermit integration to NcmIntegral1d.
New NcPowspecML object for abstract linear matter powerspectrum. New NcmIntegral1d object for generic one dimensional integration. Organized NcTransferFuncBBKS internally.
Fixed documentation.
Bug fixed: normalization of the Planck and CLASH masses distributions are now implemented considering M_PL >= 0 and M_CL >=0. Normalization is given in terms of the error functions. This modification was done for the computation of the 3D integral!!!
Fixing examples. New example example_epdf1d.py added.
Moved NcPowerSpectrum to NcmPowspec (more general base object).
Added new abstract class for powerspectrum implementation.
Finished gitignore organization.
Organizing gitignore to clean the index.
Adding .gitignore to the repo.
Missing ChangeLog in libcuba.
Updated example out filename.
Added submodel support for NcmModelCtrl and finished the transition for submodels in all derived objects.

Added tests for submodel in NcmModelCtrl.
Added submodel concept in NcmModel. NcHIReion and NcHIPrim are now submodels of NcHICosmo.
Renamed submodel for stackpos (stack position) in NcmMSet internals.
Finished resampling for NcDataPseudoCounts and its tests.
Added set_cad function in DataClusterPseudoCounts.

[v0.13.1]

Last updates in examples. ChangeLog updated.
Fixed docs and updated ChangeLog.
Updated and improved PseudoCount related objects. Updated of all examples finished. Fixed NcmMSet typo. Added accelerated bsearch option for NcmSpline2d.
Updating examples and organizing prepare calls in calc objects.
Bug fixed: ncm_data_set_init(...) was included in nc_data_cluster_pseudo_counts_init_from_sampling().
Updated ChangeLog
Bumped to v0.13.1
Now using ax_cc_maxopt to detect the best optimization flags (removing fast-math if included).
Removed dependency in Sqlite3.
Moved all Hubble data from sqlite3 to .boj files.
Moved all SNIa data from SQLite to obj files.
Fixed names of nc_data_cmb_wmap?_shift_param.obj files. Moved all distance priors data to obj files.
Moved shift parameter data to obj files. Fixed bug in NcmLikelihood. Removed old shift parameter constants in NcmC.
Added stackable and nonstackable models option.
Fixed doc not including NcmSplineCubic*. Finished support for NcmSpline2d serialization. Fixed typo in NcPlanckFI. Advanced in the class background.c replacement. Added 4He Yp from BBN interpolation table in NcHICosmoDE models.
Reorganized functions names in NcHICosmo, mostly for documentation reasons.
Internal reorganization.
Fixed typo in nc_recomb_seager.c (missing 1/3 factor).
Added more doc in NcRecombSeager and removed old code.
Finished all He switches in NcRecombSeager. (Working in progress)
Updating recombination code to match the theory used in recfast 1.5.2.
Updating constants in NcmC namespace.

Updated CODATA constants from the last release of 2014. Included concise atomic weights from IUPAC. Organized astronomical constants using IAU recommendations. Included concise atomic spectra from NIST database. Included references for the constants. Updated constants.txt to reflect the 2014 CODATA release.

Updated/added documentation for most functions in NcmC.

Updated all objects to conform to the new names for the constants in NcmC.

Updated CLASS thermodynamics.c, arrays.h and arrays.c.

Working in progress in joining/comparing CLASS thermodynamics and NcRecomb.
Implemented function to compute 1-3 sigma error bars for the best fit.
Added message to be print when mode_error (mcat_analyze) is called.
mcat_analyze: implemented options mode_errors and median_errors. They provide the mode (median) and the 1-3 sigma error bars of a parameter.
Implemented functions to perform Planck-CLASH analyses considering flat priors for the selection and mass functions.
Fixed typo.
New NcHIReion* objects. Moved Yp to the cosmological model NcHICosmo.

Added new NcHIReion* objects to implement reionization models. Included CAMB like reionization NcHIReionCamb. The reparametrization object NcHIReionCambReparamTau permits the usage of tau_reion as the parameter for NcHIReionCamb.
New reionization objects (in development). Fixed minor bugs (including bugs in libcuba). Unstable boltzmann codes (in development).
Fixed sampling function of nc_data_cluster_pseudo_counts (and nc_cluster_mass_plcl).
Script to perform ESMCMC analysis of the Planck-CLASH clusters.
Added build hook to copy modified doc files to the building directory.
Fixed types in test_nc_recomb.c.
Missing file.
Missing files.
Improved documentation.
Documentation about GObject (basic concepts).
Updating recombination code.
Documentation
Removing support for clapack usage (some headers are broken).
Fixed minor bugs,
Fixed typos on README.md file. Imrpoved documentation. Function nc_data_cluster_pseudo_counts_init_from_sampling created. Sampling of cluster pseudo counts is working.
Better organization of Bolztmann code options and NcHIPrim implementation example.
Fixed all virtual functions in abstract classes to be recognized as such by the GObject introspection. Created new NcmModelBuilder to create NcmModel from binded language. Added a new example for this new feature.
Made gtkdoc optional (testing).
Improved NcmDataGaussCov tests.
Added support to GSL-2.0.
Removed spurious print from NcmModelTest. Added control on OPENMP in ncm_cfg_init.
Fixed parameter name in NcCBEPrecision.
Fixed memory leaks and vector parameter allocation in NcmMSet (very obscure bugs only active in weird cases). Added name and nick for every Model for debug purposes.
Fixed leak in numcosmo/nc_cbe_precision.c. And improved tests.
Updated macro NCM_TEST_FREE to use a safer method.
Add VERBOSE = 1 in make check.
New function ncm_mset_trans_kern_gauss_set_cov_from_rescale.
Fixed reallocation problem.
Added gi.require_version in python examples. Fixed opendir leak in libclik (plc-2.0).
Fixed typo.
Fixed return statement in clik_get_check_param.
Fixed fprintf usage in class.
Removed data repetition.
Fixed reference.
new NcHIprimAtan object (primordial spectrum power law x atan). New mset_gen tool to generate .mset files. Added flag controling the tensor mode usage in NcHIPertBotlzmannCBE. New references (to the atan models). Bumped to version 0.13.0.

[v0.13.0]

new NcHIprimAtan object (primordial spectrum power law x atan). New mset_gen tool to generate .mset files. Added flag controling the tensor mode usage in NcHIPertBotlzmannCBE. New references (to the atan models).
Better error mensage when trying to de-serialize an invalid string.
Fixed parameter name in NcHICosmoDE z_re -> tau_re. Fixed NcHICosmoBoltzmannCBE to account correctly the lmax when using lensed Cls. Added free/fixed parameter manipulation functions to NcmMSet.
Missing HIPrim implementation PowerLaw (nc_hiprim_power_law).

Working in progress in the Planck+CLASS interface.
New objects and support for primordial cosmology NumCosmo <=> CLASS.

New NcHIPrim object to deal with primordial cosmology. New NcHIPrimPowerLaw object to implement simple power law primordial spectra.

Organized main documentation page. Added support for external callback function in CLASS so it can call NumCosmo to get primordial spectra. Wired CLASS so it uses NumCosmo NcHIPrim to get the primordial spectra.

Testing results of NumCosmo + Planck + CLASS.
First working version of the Planck+CLASS interface. Minor bug fixes.

New NcHICosmoDEReparamOk to better handle Omega_x -> Omega_k reparametrization. Removed old code and updated NcmReparam. Moved precision data for CLASS Backend CBE to NcCBEPrecision. Added tests to check consistency of NcHICosmoDE. New parameters ENnu effective number of neutrinos to NcHICosmoDE. New methods of NcmHICosmo nc_hicosmo_Omega_g and nc_hicosmo_Omega_nu to account for electromagnetic density and ultra-relativistic neutrinos density.

Finished the interface NcHIPertBoltzmannCBE which uses CLASS as backend for perturbative computation, needs polishing. Finished the interface for Planck likelihood NcDataPlanckLKL.
Working on the CLASS interface. All precision parameters mapped.
Initial phase of the Class backend interface.

Modified ncm_cfg_get_data_filename so it also search in PACKAGE_SOURCE_DIR for data files. That way a non-installed and non-configured numcosmo can run using the data from the source directory.
Added Class as backend. Documentation fixes. Renamed object NcPlanckFI_TT to NcPlanckFICorTT.
Missing files in the last commit.
New NcPlanckFI objects.

New NcPlanckFI model type and one implementation NcPlanckFI_TT were created. These models implement the necessary parameters to deal with the Planck likelihood.

Included the conection between NcPlanckFI* model and NcDataPlanckLKL likelihoods.
Updated test_nc_cluster_pseudo_counts.
Bug fix and initial object development.

Added support for extra flags cheking in Fortran. Added new object NcDataPlanckLKL, almost finished laking the NcmData implementation.

Fixed two bugs in bflike_smw.f90, now it works with -O3 + gfortran.
Fixed last steps for making releases.
Added Planck likelihood 2.0 to the building system.

Organized the PLC likelihood nested in the NumCosmo building system. Added the Fortran prerequisites in order to allow parallel compilation.
Updated to internal libcuba 4.2.
Resample function of nc_cluster_data_pseudo_counts is a work in progress. NcClusterPseudoCounts object has a new property: ncluster - number of clusters.

NcClusterMass and NcClusterRedshift are no longer properties of NcClusterAbundance. Examples still need to be update!
Fixing minor bugs.
Fixed bug .
Support for more sundials 2.6.x versions.
Fixed tests and removed debug prints.
Testing new parametrizations in hipert_two_fluids.
Deleted functions related to the 3-dimensional integral on nc_cluster_pseudo_counts.c and renamed all functions of the new 3-dimensional computation removing the label "_new_variables".
Functions to compute the 3-dimensional integral over the true, SZ and lensing masses are working. There are two set of functions to compute it (independently). The main diference between them is the set of integral variables: 1) logarithm base e of the masses and 2) new variables (we performed a change of variables). The later provides the best results and it is in agreement with the 1+2 integral (integration over true mass and a bidimensional integration over SZ and lensing masses) for any values of the parameters.
Cleaned the code
Implemented limber approximation for cross-correlations and likelihood analysis
Minor modifications: in progress!
Added missing data file.
Fixed typo. Working in progress...
Several improvements. New sub-fit support.

Updated configure to detect new versions of SUNDIALS. All dependent code updated accordingly.

New subsidiary fit support. Before each step in a fitting process, it will fit a subsidiary likelihood using a subset of the parametric space.

Automatic convertion between variant vector of doubles and NcmVector and variant matrix of doubles and NcmMatrix. It is no longer necessary to manually convert NcmVector and NcmMatrix to variant when using it as object property.

Updated all objects (but NcDataClusterPseudoCounts) to use NcmVector/NcmMatrix directly as properties instead of their GVariant versions.
Documentation improvements (in progress): some NcClusterMass' children, ncm_abc.c and ncm_lh_ratio1d.c.

Implemented bidimensional integrations [divonne function (libcuba)] using and not using peakfinder. Idem for tridimensional integration with no peakfinder.

Implemented functions to compute the integrand peaks in nc_cluster_mass_plcl and nc_cluster_pseudo_counts: testing! Created test_nc_cluster_pseudo_counts: in progress!
Added support for new version of SUNDIALS.

Working on NcHIPertBoltzmann.
Fixed bootstrap support in NcmDataDist1d
Moved BAO data from hardcoded to serialized objects. New BAO data. Minor test updates.

All BAO data now are included as serialized objects. New tests in test_ncm_mset. New NcDataBaoDHrDAr object for (D_H/r_zd, D_A/r_zd) data. New field "long-desc" in NcmData to include detailed description of data. Removed old data BAO from NcmC.
Fixed bugs in ncm_lh_ratio1d from last update in this object.

Added shallow copy to NcmMSet and its tests.
Added more testing in test_ncm_mset, fixed minor bugs.
New support for multples models of the same type in NcmMSet. Minor fixes and updates.

Created test suit for NcmMSet.
Documentation: improvements on nc_cluster_redshift, nc_cluster_mass and nc_hicosmo.

Unstable version of nc_cluster_mass_plcl.
Minor update.

Updated libcuba (4.1 => 4.2). Fixed typos and simple bugs. Added test for NcmFuncEval. Added tests for finite values of m2lnL in ESMCMC.
Added check for missing set/get functions in NcmModel.
Pseudo cluster number counts: observable and data objects were created. Integral new function: function to compute tri-dimensional integral implemented using cuhre function (libcuba). Documentation: improvement in different files.
Added support for jerk in DE models.
Implementing Planck-CLASH mass function: in progress.

Documentation: nc_cluster_mass.
Bumped to v0.12.2

Fixed typo in ncm_stats_dist1d.c. Updated Changelog

[v0.12.2]

Bumped to v0.12.2
Fixed bug in ncm_fit_esmcmc_run_lre.
Added new lnsigma_lens parameter to NcSNIADistCov.

New release of JLA data available on NumCosmo site, full sample without any additional variance included (everything now is included by the model).
Tools reorganization and several improvements.

Moved darkenergy to tools directory. Removed from darkenergy options for catalog analyze.

Created mcat_analize to perform analysis on Monte Carlo catalogs including MC, MCMC, ESMCMC and Bootstrap MC.

New NcmStatsDist1dEPDF for 1-dimensional empirical distributions, it implements a fast Gaussian basis function interpolation for general 1d distributions, recreating the pdf, cdf and inverse cdf. Allowing fast resample and quantiles calculation.

Added hash table interface to access functions from NcHICosmo and NcDistance. All these functions are accessible from mcat_analyze, allowing it to generate quantiles, distributions, cdf for all these quantities.
Added missing docs directives.
Improved interface to NcmLHRatio2d in darkenergy. Minor improvements.
New cluster mass relation: Planck-CLASH correlated mass-observable relations. Planck - SZ signal. CLASH - lensing signal. This object is not finalized. Work in progress.

The function "ncm_model_class_set_name_nick" shall be called before "ncm_model_class_add_params". Fixed this order in various models.

Documentation (improvement): ncm_stats_dist1d.c, ncm_stats_dist1d_spline.c, ncm_model.c, ncm_sparam.c, ncm_sparam.h.

Removed spurious line (sd1->norma = 1.0;) from ncm_stats_dist1d_prepare function.

Improved message error in ncm_model_class_set_sparam and ncm_model_class_set_vparam functions.
Missing file.
Optimization flags.
Added and enable flag to include compiler's optimization/warnings flags. Made several minor code quality improvements.
Added a internal version of Cuba. Fixed minor typos and updated autogen to use autoreconf.

It is no longer necessary to have an installed version of Cuba. If it is not available in the system the library compiles its own internal version of Cuba. The same was done recently for levmar. Updated README.md to explain these points.

Removed cubature lib support (now it always use Cuba).

Added option for different inclusing of redshift errors in NcSNIADistCov.

Removed the call for cholesky_decomp in cholesky_inverse, now the user must call both.
Better workaround for the missing fffree/fits_free_memory functions and SUNDIALS_USES_LONG_INT macro. Corrected version for g_test_subprocess usage.
Fixed threads competitions with OpenBLAS or MKL. Finished the NcDataSNIACov interface.
New minor version. Several improvements.

Better building tool support for lapack/BLAS. Improved speed using different interfaces for Lapack/BLAS. Included levmar internally and removed as optional dependency. Levmar intreface now supports box constraints. Added virtual functions for lnNorma2 and resample in NcmDataGaussCov. Updated interval vector usage in NcmFitNLOpt and NcmFitLevmar. Added support for estimating true width and colour in NcDataSNIACov. Improved resampling in NcDataSNIACov, now it resamples all data m_B, w and c. Several new functions in NcmMatrix (support to writing data in col-major order). New ncm_mset_catalog_calc_ci for calculating confidence intervals for generic function using a NcmMSetCatalog. Added option for confidence intervals from catalogs in darkenergy. Added templates as dependency for NcmFitNLOpt enums files.

NcDataSNIACov now uses the (hopefully) the right normalization (new feature still experimental).

Added some misc statistical functions in NcmUtil (experimental).

[v0.12.1]

New minor version. Several improvements.
Added option for unordered MC runs. Fixed typo in parameter of NcSNIADistCov.
Several minor fixes and improvements.
Formated section documentation for all object, some simple doc fixes.
Added option to OGbject introspection scanner use the same CC flag.
Added checks for file open/close.
Documentation: changed titles and short description: BAO
Missing files.
Added missing references.
New test: test_nc_data_bao_dvdv.c Added nc_cor_cluster_cmb_lens_limber.h in numcomso.h
Fixed typo in name nc_data_bao_empirical_fit. Support for data filenames. New BAO data.
Improved NcmSpline is now serializable. New ncm_stats_dist1d_* family. New BAO data nc_data_bao_empirical_fit. Alpha^3 version of the new Boltzmann object.
Created test for object nc_data_bao_rdv.
Include catalog description in the fits in NcDataSNIACov and fixed minors leaks.
Added dataset minimum id check in NcDataSNIACov.
Fixed documentation.
Fixed missing docs tag in nc_snia_dist_cov.h.
Added SNIa from SDSS-II/SNLS3 ( arXiv:1401.4064 ).
Object ncm_lapck.c was documented.
Fixed other compilation problems.
Fixed some minor compilation problems.
New Ensemble Monte Carlo object added, several minor fixes and MC codes organization. Work in progress on nc_hipert_two_fluids family.
Testing twofluids_wkb. Added precision property in nc_mass_function, default 10^{-6}.
Better error message in ncm_fit_new and fixed wrong parameters in example_simple.py and example_simple.c.
Added README to conform with automake. Fixed verbosity in NCM_TEST_FAIL and NCM_TEST_PASS.
Added links to README.md
Corrected file.
Added generic INSTALL file.
Removed old README.
Reorganized data objects. Improved README.md and docs.
Fixed bug in g_clear_pointer usage.
Added support for old cfitsio >= 3.25.
Added traceback for error messages. Testing differents summaries in NcABCClusterNCount.
Added support for the new version of libcuba 4.0.
Trying different ABC summary statistics.
Removed old gdarkenergy from building. Scale fisher matrix by two when using in the transition kernel in mcmc.
Removed debug message.
Fixed bug, trying to compile a vala source without vala available.
Fixed memory leaks in NcABCClusterNCount and NcClusterAbundance. Some new additions and more stable ABC code.
Better error message in prepare_base.
Updated the threaded evaluation function.
Fixed binning methods.
Fixed documentation in NcABCClusterNCount.
Added more options for binning in nc_data_cluster_ncount and nc_abc_cluster_ncount.
Fixed bug in ncm_abc.c (wrong number of additional columns). New main-seed and nthreads options in darkenergy.
Improvement on ABC interface. Added seed and nthreads options to darkenergy.
Fixed more compilation problems (when lacking of fftw3l).
Fixed some compilation errors for systems without fftw or cfitsio.
Missing file in EXTRA.
Fix several minor memory leaks, racing conditions. Functional version of NcmABC and NcABCClusterNCount.
Improvement on NcmSplineCubicNotaknot and NcmABC.
Improved blas/lapack search.
Fixed non-defined variable for lapackless systems.
Fixed lapack header inclusion.
Better support for blas and lapack search in configure and code organization and new NcmABC.
Fixed: property seed is no longer G_PARAM_CONSTRUCT (ncm_rng.c).
Fixed wrong casting.
Organized mc samplers in NcmMCSampler abstract object. New methods for Vector, Matrix, Model and MSet. Fixed bugs in NcClusterPhotozGaussGlobal.
Fixed nc_hicosmo_de prototypes for better bindings. New get/set functions by parameter names.
New example ode_spline. NcClusterRedshift transformed in NcmModel.
Minor fixes, release candidate 0.12.0rc1.
Fixed tests (using g_test_trap_fork unitl glib < 2.40).
Several fixes for release candidate 0.12.0rc0.
Fixed references.bib.
Updated ChangeLog.
Improved nc_data_cluster_ncount and fixed documentation typos.
New WKB codes and improvements in the perturbations code. Bumped to 0.12.0.
Improving adiabatic perturbations code.
New perl bindings example. Fixed bugs in ncm_spline.c. New expermental code in adiab.
Improved example_ca_sampling.py.
Added methods to exam a NcDataClusterNCount contents. Improved example_ca_sampling.py.
Added new example to Makefile.am
Fixed parameters setting order.
Removed testing code.
Better adaptation of NcCluster* to generating better bindings.
Added missing files.
Fixed documentation issues.
Improved README of examples. Introduced NUMCOSMO_DATA_DIR environment variable to allow running darkenergy with data without installing the library.
Fixed bug (infinity recursion to compute dE2/dz) in nc_hicosmo_qspline.c. Documentation of ncm_fftlog.c is partially done.
Finishing conversion of perturbation code to interfaces.
Fixed warnings.
Fixed header paths.
Create objects related to the matter density profile (abstract and NFW) and the computation of the cross corelation between clusters and CMB lensing potential. These codes are in development.
Improved tests. Organizing old code. New perturbations code.
Several additions.
Fixed many memory leaks.
Added ncm_func_eval_threaded_loop_full to run one worker per index.
Fixed memory leaks in serialization and minor bugs.
Two arXiv references were added as comment. Modify redshift from Beutler et al. 2011 (before z = 0.1, now z = 0.106).
Adapting tests to conform to the new g_test_trap_subprocess. Fixed cvodes/cvode usage.
Removed gtester support.
Fixed bugs in testing.
Fixed gtkdoc's and introspection warnings.
Lower bound of the Dsz parameter from NcClusterMassBenson model is now 0.01.
Several minor improvements.
Added support for general gaussian priors in darkenergy.
Fixed minor bug (params_max and params_min were not being allocated).
Removed old code from nc_cluster_mass_lnnormal.c.
New NcmFitCatalog and NcmFitMCBS objects.
Comments removed in these files.
NcClusterMassLnnormal has now two properties: bias and sigma.
Added cpu core counting to set NTHREADS automatically.
Added support to libcuba 3.3.
Bug fixed.
Angular reduction when looking for bounds to avoid infinity repetition.
Fixed bug in NcmData which didn't called begin when a sample was generated by a resampling.
Fixed but in NcDataClusterNCount which discarded old references of NcClusterMass and NcClusterRedshift.
Fixed bug in darkenergy (always setting params reltol to 1e-5).
Added support for setting reltol and params-reltol in the NcmFit object.
Added global variables initialization for gsl_rng functions.
Fixed bug in ncm_func_eval_threaded_loop.
Fixed lock/unlock problem in NcDataCluster resampling.
Fixed miscellaneous bugs with valgrind (memcheck and helgrind).
Finished support for multithreading montecarlo and bootstraping.
Several improvements.
Several improvements and new objects.
Adding support for bootstrap in ncm_data_gauss_cov. Improved continuity prior on nc_hicosmo_qspline (using three knots with five points straight line fitting for continuity prior).
Inverted Class struct possition to avoid gtk-doc's bug.
Modified qspline continuity prior to fit line using n points for each three knots.
Separeted two types of priors in NcmLikelihood chisq and m2lnL. Modified continuity prior to use m2lnL priors. Modified darkenergy to receive the snia_cov serialized object.
Transformed continuity priors in NcmModel to fit the prior variance. Added automatically (set|get)_property to object_class in ncm_model_class_add_params and check for right functions. Changed models and tests accordingly.
Fixed compilation error in 32bits platforms.
Minor version increased, adapted glib versioning system.
Fixed continuity constraints in hicosmo_qspline. Improved continuity prior by using linear fitting to aproximate three points by a straight line.
Changed from g_hash_table_contains to g_hash_table_lookup != NULL to work with older glib.
Testing a new penalty function for overfitting in NcmDataGaussCov. Fixed compilation with new libcuba release. Improving documentation.
Still testing.
Testing new continuity priors in HICosmoQSpline.
Fixing documentation issues.
Reorganized NcSNIADistCov and NcDataSNIACov. Now all data is allocated in NcDataSNIACov and only model parameters stay in NcSNIADistCov. This fix the montecarlo with fiducial model issues.
Added an assert to NcSNIADistCov to check if the data is loaded.
Fixed bug model changing in NcDataSNIACov, now it work with alternating NcSNIADistCov models.
Testing different continuity priors in HICosmoQSpline. Added missing doc tags.
Added support for constraints in NcmFit and multiple algorithms in NcmFitNLOpt.
Improved numerical differentiation calculation through better choice of steps.
Removed wrong documentation.
Better update control in NcHICosmoQSpline object (fixed bug).
Fixed parameter name in function documentation.
Transformed QSpline continuity prior in an object. Added subdir-objects to automake.
Included numcosmo/build_cfg.h in every header to generate bindings for conditional compilation functions.
Included missing header.
Improved catalog functions in nc_data_snia to allow better bindings.
Added missing parameters documentations in mset macros. Removed debugging g_error.
Modified model id framework, now the ids are exported by functions to allow better bindings through introspection.
Added function to count number of named instances and correct type annotation for named instances functions.
Improved NcmFitMC, log messages and support for different fitting and fiducial models.
Fixed free error in darkenergy.
Support for named instances, a global object pool. Added serialization of named instances. Added mset_load/save method for mset serialization. Added save-mset and fiducial options to darkenergy to allow saving NcmMSet used in a analysis and defining a arbitrary fiducial model for Montecarlo studies. Better organization of model registry and id.
New test: test_ncm_data_gauss_cov, testing resample and sanity.
Working on fftlog. Added kinematic functions for DEC and WEC. Added DEC and WEC tests to darkenergy option --kinematics-sigma.
Added property maxiter and method to change it in NcmFit. Connected this method with the --max-iter option in darkenergy. Included kinematic output in the --out option in darkenergy.
Imported some code from glib to allow serialization under glib < 2.30. Fixed warnings for compilations without sqlite3.
Workaround to g_clear_object usage.
Added workaround to check for sundials header correctly.
Implemented function to compute the inverse of the square normalized Hubble function (nc_hicosmo_Em2). Modified q-sigma, q-n and q-z-max DE options to kinematics-sigma, kinematics-n and kinematics-z-max. The kinematics-sigma option computes the deceleration parameter, the squared normalized Hubble function, its inverse and their error bars via Fisher Matrix approach.
Fixed default option for qspline continuity priors.
Several additions.
Implemented function nc_hicosmo_Omega_mh2. Functions nc_distance_decoupling_redshift and nc_distance_drag_redshift now use nc_hicosmo_Omega_bh2 and nc_hicosmo_Omega_mh2. Function nc_distance_dsound_horizon_dz was included in nc_distance.h. Documentation of nc_distance.c in progress (approximately 2/3 ready).
Updated ChangeLog.
Removed functions: nc_distance_curvature, nc_distance_comoving_a0 and nc_distance_comoving_a0_lss. nc_distance documentation im progress.
New data included. Silent rules by default during make.
Move back the functions p_limits and n_limits to be computed with 7 * sigma.
Added support for NcmVector and NcmMatrix serialization and their repective tests.
Updated integration on zeta true. The gap (1 < zeta < 2) was removed and the integration is performed in the entire interval. This is different from SPT code (their normalization does not take into account this gap), but it is consistent with the normalization used.
Improving tests and examples.
Improving tests and examples.
Added support for repeated options in darkenergy. New H(z) and BAO data. Support for non darkenergy models in darkenergy application.
Updated to glib 2.36, g_type_init no longer required. Added macros for testing for older versions.
Baryonic density (Omega_b) Gaussian prior from Big Bang Nucleosynthesis (BBN) was implemented.
Fixed bug: _ncm_data_gauss_resample now correctly uses the lower diagonal of the Cholesky decomposition.
File nc_data_cmb_dist_priors.c was documented.
Included WMAP 9 year distance priors.
Splitting namespace in NumCosmo and NumCosmoMath.
Testing.
Improving documentation, removed old files and fixed msg in autogen.sh.
Improvements to allow better bindings.
Better code for prereq finding during configure.
Copied the values of the magnitude from NcSNIaDistCovt to NcDataSNIaCov.
Testing SPT fitting.
New example: simple SN Ia model fitting.
Fixed g-ir-scanner sources argument.
Changed vector parameter in models to GVariant to improve serialization.
Added examples to dist and installation.
Updated ChangeLog.
Better organization of SN Ia data. Added BAO data.
Several bugs fixed. New supernovae Ia data with covariance matrix.
Fixed bug: Modified the number of bins to build the histogram of -2lnL (Monte Carlo). Fixed bug: set has_covar fit member equal to TRUE in function ncm_fit_mc_mean_covar.
Several improvements in documentation.
Removed enum doc.
Reorganized the conditional compilation of levmar and nlopt. Better solution for nlopt header processing.
Removed bugged unnecessary copy in numcosmo/Makefile.am.
Translated confidence region in NcmLHRatio1d and NcmLHRatio2d objects. Improved two dimensional confidence region algorithm. Added test in NcmOdeSpline to detect integration problems. Added test in NcGrowthFunc to detect integration problems. Bumped to version 0.9.0. Organized Monte Carlo code in NcmFitMC including gof tests. Added new functions on NcmMSet to set/get all models parameters.
Fixed bug in ncm_cfg_create_from_string which didnt indentify object strings with leading whitespaces.
Improved comment organization in keyfile generation.
Fixed segfault in darkenergy.
Fixed tests and clear functions in NcmSpline2d.
Fixed bugs in allocation in NcmSpline2d. Fixed wrong property name in NcMassFunction. Added support to validity check in NcmModel, NcmMSet and added these checks in the minimization algorithms. Fixed NcDataClusterNCount description.
Added --fit-list printing all Fit options. Added get_dof to NcmData, returns the effective degrees of freedom of that data. Fixed bug in floating objects (matrix|vector) now all saved references are sunk. Fixing indentation. Fixed bug in Fit numerical differentiation that uses the wrong function to obtain the number of free parameters. New ncm_(matrix|vector)_new_gsl_static functions. Fixed bug in levmar (it was using wrong measurement vector). Converted NcmFit object and its derivatives to GObject framework. Included the nlopt enum to obtain the correct list of algorithms. Fixing memory leaks with valgrind memcheck. Added ncm_message_ww to suport logging with word-wrap.
Removed: old nc_data_cluster_abundance.c.
Converted Data object (and its derived objects) to GObject framework. Converted Dataset and Likelihood to GObject framework. Fixed dispose method in every object. Added clear method for all objects. Reorganized priors in ncm_priors.(c|h) and nc_hicosmo_priors.(c|h). Added warning and LU decomposition in NcmFit when inverting the covariance matrix.
Static function (_ncm_fit_run_empty) was created to compute m2lnL when there is no free parameter. This is used to compute profile likelihood confidence regions.
Added darkenergy.1 to dist. Added test_nc_recomb. New function ncm_cmp to compare doubles.
Updating recombination object to GObject framework and several improvements. Updating documentation.
Implemented shift parameter and distance priors for WMAP7. Corrected value of WMAP5 shift parameter standard deviation. Message log with models and data used are printed for Monte Carlo runs.
Improving examples.
Testing function to print mass functions data from catalog.
New function ncm_model_id_by_type. Added project's URLs in configure.ac. Updated glib's threads usage. Fixed several documentation bugs. Fixed NCM_TYPE_GMSET -> NCM_TYPE_MSET. Fixed NCM_TYPE_GMSET_FUNC -> NCM_TYPE_MSET_FUNC Fixed make check, still missing several tests. Fixed lapack functions conditional compilation. Fixed constructors names ncm_mset_func_new_hicosmo_func(0|1). Added backward compatibility to compile with glib >= 2.26. Fixed backward compatibility with gsl < 1.15. Reworked the constants to be compatible with introspection. Working examples in C and Python.
Testing...
Added NUMCOSMO_HAVE_LAPACK test in ncm_lapack.h.
Complety rework of headers organization. Removed old lss/Makefile.am. Added a compatibility layer for g-ir-scan.
Fixed redefinition of NUMCOSMO_HAVE_INLINE.
Much simpler method for compiling inlined functions. Removed extra argument in darkenergy man page.
Added missing file.
Fixing inline functions. Added a new *_inline.c to explicity compile the inlined functions.
Fixed inline functions macros.
Fixed (updated) example.
Added backward compat for older fftw.
Removed INSTALL from installed docs.
Added format to fprintf in: ncm_cfg.c, confidence_region.c, util.c, recomb.c, darkenergy.c.
Fixed entries in darkenergy.xml.
Removed old catalog_parser doc
Fixed several bugs in conditional building. Removed asciidoc parsing to remove this dependency when building from repository.
Fixed positivity prior to use the original parameters.
Added test to avoid writting comments for empty entries.
Added positivity prior for Omega_x.
Removed all exit(); calls from the library.
Updated NEWS.
Including cfitsio via PKG_CHECK_MODULES.
Bugs: sizeof format and fgets return fixes.
Added tests for fit support in darkenergy.
Added return tests for scanf/fread/etc family functions.
Removed spurious header fitsio.h from print_data.c.
Fixed NCM_(WRITE|READ)_* macros. Added platform independent format when printing sizeof.
Added correct ifdef for cfitsio presence. Corrected printf types in ncm_cfg.c. Added read/write error testing in NCM_(WRITE|READ)_* macros.
Removed old catalog_parser.
Organized data object in nc_ namespace. Added support to choose data samples by name or nick when runnig darkenergy. Added list options in darkenergy to list available data options.
Corrected requested minimum version of gsl to use gsl_integration_glfixed_table.
Removed old INCLUDES from tools/Makefile.am. Added atlas libraries when testing for atlas_lapack.
Improved Tinker multiplicity function (critical density): for Delta_z > 3200 the multiplicity function coefficients are now computed using the fitting formula given in Tinker et al. paper. Previously, when Delta_z > 3200, the coefficients were computed assuming Delta_z = 3200.
Changed precedence in darkenergy, now command line options takes precedence over configuration file.
Reworked darkenergy command line options, now each run can be saved as a ini file, also the options now can be specified by a .ini file which takes precedence over the command line options.
Fixed bug: when copying a likelihood the priors were copied without increasing their reference count. Extended NcmModel: added new property for each parameter describing the fit type. darkenergy not functional, changing from --fit-params to directly setting the fit type by setting the parameter property.
NcClusterMass... (Vanderlinde, BensonXRay, Lnnormal, Nodist) were adapted to NcmModel.
Fixed bug: HICosmo macros were modified (old: NC_MODEL; new: NC_HICOSMO...).
The integrations _nc_cluster_mass_vanderlinde_significance_m_p and _nc_cluster_mass_vanderlinde_intp were optimized.
The integrals to compute the probability distributions of the Vanderlinde mass-observable relation is being optimized.
Removed old INCLUES in Makefile.am. Threaded evaluation for real data in cluster abundance. Reorganized ncm_func_eval_threaded_loop to simply run the loop function when threads are disabled. Added CUBACORES=0 to environment in to avoid parallelization in libcuba.
Documentation fixes.
Memory leak fixed in nc_cluster_mass_benson.c and nc_cluster_mass_vanderlinde.c. Debug messages were removed.
Moved gobj_itest from bin_PROGRAMS to noinst_PROGRAMS. Added transfer full to the return value of ncm_reparam_ref.
Bug fixed: when it was set a reparametrization, all other parameters were reset to their default values. Now only those parameters modified by the reparametrization are set to the new parameter default values.
Tinker multiplicity function - critical: for Delta > 3200, it is set Delta = 3200 and a warning message is provided.
Testing resample and montecarlo tools.
Fixed bug in ncm_fit_montecarlo_matrix
Developing new mass-observable relation.
Fixed bugs in reparams. Now --flat works again.
Testing cr algorithms.
Extended limits in Omega variables.
Added test to check if libnlopt exists. Testing nc_galaxy_acf.
New implementations of NcClusterMass.
Renamed special functions to comply with the library standards.
Reorganized NcMassFunction. Adjusted to correct functions names and _prepare function usage.
Fixed indentation.
Included g_assert in Tinker multiplicity functions (mean and critical) to assert that Delta <= 3200.
Renamed flag plane => flat.
Finished NcClusterMassLnnormal.
Finished paralelization to compute m2ln of cluster abundance. Still in test.
Fixed bug in function_eval lf => lfunc.
Updated configure.ac using autoupdate.
New organization of NcClusterAbundance and NcDataClusterAbundance.
Missing files.
Bug fixing and new implementations.
Added a simple GObject (de)serialization function set. Added nc_hicosmo_free function. Added tests for GObject (de)serialization. This msg is for the last commit.
Updated manual URL
Updated manual URL
Fixed documentation build.
New repository for savannah upload. Corrected AUTHORS and README, added COPYING. Erased old TODO. Version bumped to 0.8.0.

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