fptype-config.xml

<?xml version="1.0" encoding="UTF-8"?>
<testSuite name="CheminfoBench" xmlns="http://www.sun.com/japex/testSuite">
    
  <param name="basedir" 
         value="."/>
  <param name="japex.classPath" 
         value="build/classes" />
  <param name="japex.resultUnit" 
         value="ms" />
  <param name="japex.warmupIterations" 
         value="5" />
  <param name="japex.runIterations" 
         value="25" />
  <param name="japex.reportsDirectory" 
         value="build/reports" />
 
  <driverGroup name="Fingerprints" 
               xmlns="http://www.sun.com/japex/testSuite">
    
    <driver name="Fingerprinter">
      <param name="japex.driverClass" 
             value="net.openmolecules.benchmark.driver.fingerPrinting.FingerprinterDriver" />
      <param name="japex.classPath" 
             value="${basedir}/lib/cdk-1.3.x-20091008.jar" />
      <param name="description" 
             value="" />
      <param name="chemObjectBuilder"
             value="org.openscience.cdk.DefaultChemObjectBuilder" />
    </driver>
    
    <driver name="ExtendedFingerprinter">
      <param name="japex.driverClass" 
             value="net.openmolecules.benchmark.driver.fingerPrinting.ExtendedFingerprinterDriver" />
      <param name="japex.classPath" 
             value="${basedir}/lib/cdk-1.3.x-20091008.jar" />
      <param name="description" 
             value="" />
      <param name="chemObjectBuilder"
             value="org.openscience.cdk.DefaultChemObjectBuilder" />
    </driver>
    
    <driver name="MACCSFingerprinter">
      <param name="japex.driverClass" 
             value="net.openmolecules.benchmark.driver.fingerPrinting.MACCSFingerprinterDriver" />
      <param name="japex.classPath" 
             value="${basedir}/lib/cdk-1.3.x-20091008.jar" />
      <param name="description" 
             value="" />
      <param name="chemObjectBuilder"
             value="org.openscience.cdk.DefaultChemObjectBuilder" />
    </driver>
    
    <driver name="EStateFingerprinter">
      <param name="japex.driverClass" 
             value="net.openmolecules.benchmark.driver.fingerPrinting.EStateFingerprinterDriver" />
      <param name="japex.classPath" 
             value="${basedir}/lib/cdk-1.3.x-20091008.jar" />
      <param name="description" 
             value="" />
      <param name="chemObjectBuilder"
             value="org.openscience.cdk.DefaultChemObjectBuilder" />
    </driver>
    
    <driver name="SubstructureFingerprinter">
      <param name="japex.driverClass" 
             value="net.openmolecules.benchmark.driver.fingerPrinting.SubstructureFingerprinterDriver" />
      <param name="japex.classPath" 
             value="${basedir}/lib/cdk-1.3.x-20091008.jar" />
      <param name="description" 
             value="" />
      <param name="chemObjectBuilder"
             value="org.openscience.cdk.DefaultChemObjectBuilder" />
    </driver>
    
    <driver name="PubchemFingerprinter">
      <param name="japex.driverClass" 
             value="net.openmolecules.benchmark.driver.fingerPrinting.PubchemFingerprinterDriver" />
      <param name="japex.classPath" 
             value="${basedir}/lib/cdk-1.3.x-20091008.jar" />
      <param name="description" 
             value="" />
      <param name="chemObjectBuilder"
             value="org.openscience.cdk.DefaultChemObjectBuilder" />
    </driver>
  </driverGroup>
 
  <testCase name="test">
    <param name="japex.inputFile" value="data/fingerprint.txt" />
    <param name="fplength" value="1024" />
    <param name="fpdepth" value="8" />
    <param name="type" value="standard" />
  </testCase>

</testSuite>