118 log transform yi

[egouldo]

• Log-transform yi estimates prior to fitting MA mod #118 add option to log_transform() in prepare_response_variables()
• Log-transform yi estimates prior to fitting MA mod #118 create log_transform_yi()
• Fix Log-transform yi estimates prior to fitting MA mod #118 apply log-transformation in prepare_response_variables() - Log-transform yi estimates prior to fitting MA mod #118 adapt response variable preparation to accept additional argument dataset_log_transform apply argument checks Defensive programming / argument checks #116, add roxygen param roxygen2 documentation for all functions #102 - Log-transform yi estimates prior to fitting MA mod #118 adapt response variable processing to accept either/or/none for dataset standardisation/log-transformation.
• Defensive programming / argument checks #116 Upkeep for ManyEcoEvo (2024) #97 update argument checks
• Update pred_toZ()
• Update standardise_response()
• Log-transform yi estimates prior to fitting MA mod #118 update process_response() to match log-transformation and standardisation updates
• Log-transform yi estimates prior to fitting MA mod #118 add function log_transform_response()
• Log-transform yi estimates prior to fitting MA mod #118 update application of prepare_response_variables() in targets pipeline
• Log-transform yi estimates prior to fitting MA mod #118 Upkeep for ManyEcoEvo (2024) #97 roxygen2 documentation for all functions #102 devtools::document()
• Increment version number to 2.5.0
• Log-transform yi estimates prior to fitting MA mod #118 rm call to redundant arg in pred_to_Z()
• upgrade '2.5.1' to Version
• Log-transform yi estimates prior to fitting MA mod #118 delete prev. data assignment occurring in middle of unfinished addition
• Log-transform yi estimates prior to fitting MA mod #118 Increment version and update description
• Log-transform yi estimates prior to fitting MA mod #118 rm redundant code erroneously left-behind
• Upkeep for ManyEcoEvo (2024) #97 increment patch version
• Log-transform yi estimates prior to fitting MA mod #118 replace second .x arg with .y arg in map2() call
• Log-transform yi estimates prior to fitting MA mod #118 fix omission of case when estimate_type is Zr and NULL args supplied for standardising / transformation
• increment patch version Upkeep for ManyEcoEvo (2024) #97
• Log-transform yi estimates prior to fitting MA mod #118 assign names to fns stored in tibbles
• *Log-transform yi estimates prior to fitting MA mod #118 update arguments in _response() fns - dat to data to help with auto-matching in pmap within prepare_response_variables() wrapper Log-transform yi estimates prior to fitting MA mod #118 - ensure all family fns have ... arg for pmap application in prepare_response_variables() since all fns have different argument lengths and names
• Log-transform yi estimates prior to fitting MA mod #118 mv fn-specific arguments out of topic roxygen block
• Dealing with Large data objects in package #91 remove arg matching for ManyAnalysts specific datasets
• Log-transform yi estimates prior to fitting MA mod #118 roxygen2 documentation for all functions #102 add example code for standardise_response() and update example code for log_transform_response()
• Log-transform yi estimates prior to fitting MA mod #118 add ... arg for using in pmap
• Log-transform yi estimates prior to fitting MA mod #118 roxygen2 documentation for all functions #102 update seealso doc
• Upkeep for ManyEcoEvo (2024) #97 update cli formatting
• - Log-transform yi estimates prior to fitting MA mod #118 add pmap internal helper function for differential application of transformation / standardisation in standardise_response() - Log-transform yi estimates prior to fitting MA mod #118 delete old pmap helper function
• Log-transform yi estimates prior to fitting MA mod #118 add ... arg to prepare_response_variables()
• Log-transform yi estimates prior to fitting MA mod #118 roxygen2 documentation for all functions #102 add example code
• - Update arg supply to targets call on prepare_response_variables() after Log-transform yi estimates prior to fitting MA mod #118 updates
• roxygen2 documentation for all functions #102 Log-transform yi estimates prior to fitting MA mod #118 devtools::document()
• Upkeep for ManyEcoEvo (2024) #97 update version description
• Upkeep for ManyEcoEvo (2024) #97 fledge::update_news()
• Log-transform yi estimates prior to fitting MA mod #118 roxygen2 documentation for all functions #102 export log_transform_response()
• Log-transform yi estimates prior to fitting MA mod #118 add check for col estimate_type existing, create it when FALSE
• - Log-transform yi estimates prior to fitting MA mod #118 docs: Add explanation about updated behaviour when estimate_type is missing in ManyEcoEvo dataframe - Log-transform yi estimates prior to fitting MA mod #118 build: devtools::document()
• Increment version number to 2.6.0.9000
• Upkeep for ManyEcoEvo (2024) #97 docs: update news
• Log-transform yi estimates prior to fitting MA mod #118 Upkeep for ManyEcoEvo (2024) #97 make new name for processed output and return object using new name
• Log-transform yi estimates prior to fitting MA mod #118 fix: conditional application of log_transform_yi
• Ensure euc yi vars not erroneously being back-transformed #88 fix: ensure log_transform also calculates SE and not SD
• Increment version number to 2.6.0.9001
• Log-transform yi estimates prior to fitting MA mod #118 update generate_yi_subsets() to deal with changes in prepare_response_variables() that now create estiamte_type col
• Upkeep for ManyEcoEvo (2024) #97 rm todos
• Increment version number to 2.6.0.9002
• - refactor!: exposed argument in exclude_extreme_VZ() to allow differenc VZ colnames (i.e. from log_transform_response()) Log-transform yi estimates prior to fitting MA mod #118 - refactor!: apply_VZ_exclusions() to handle different out-of-sample colnames for each dataset Log-transform yi estimates prior to fitting MA mod #118
• docs: Update documentation for most functions
• update comments and lint spacing Upkeep for ManyEcoEvo (2024) #97
• build!: update call to apply_VZ_exclusions() after 02d058e Log-transform yi estimates prior to fitting MA mod #118
• build!: increment version and devtools::document() Log-transform yi estimates prior to fitting MA mod #118 Upkeep for ManyEcoEvo (2024) #97
• fix: Fix roxygen entries with missing @family tag Log-transform yi estimates prior to fitting MA mod #118 and devtools::document()
• docs: update roxygen documentation
• style: save intermediate output to object out and return
• style: namespace function call
• feat: Add pointblank:: column checks and user warnings Defensive programming / argument checks #116
• fix: wrap column names in c() when checking if exist Defensive programming / argument checks #116
• style!: replace call to pointblank::cars() with c() since is superceded and add arg checking Defensive programming / argument checks #116
• bug: don't use reserved data pronoun as argument .data
• docs!: switch to import from importFrom roxygen2 documentation for all functions #102 style: linespacing / and indentation Upkeep for ManyEcoEvo (2024) #97
• fix!: breaking changes to generate_outlier_subsets()
• feat!: update downstream fns Log-transform yi estimates prior to fitting MA mod #118
• style: linespace / indentation linting bug: comment typo
• bug: fix improper mixing of cli braces in calls to glue::glue, switch to c()
• style: indentation / linespacing
• feat: add argument checks Defensive programming / argument checks #116 Upkeep for ManyEcoEvo (2024) #97
• bug!: replace transmute with mutate in addition to .keep = unused arg for Zr case (i.e. when estimate_type is supplied).
• style!: explicitly call by = arg on joins docs: Add @details and @import` tags*
• style: indentation Upkeep for ManyEcoEvo (2024) #97
• bug!: fix cli expressions, rm improper use of glue::glue() Upkeep for ManyEcoEvo (2024) #97 bug!: Log-transform yi estimates prior to fitting MA mod #118 ensure estimate_type column is added back in using argument value if existing col is replaced and stop grouping on returned data frame
• bug!: fix @imports Upkeep for ManyEcoEvo (2024) #97 roxygen2 documentation for all functions #102
• feat: expose poss_fit_sorensen_glm()
• docs!: fix broekn links to topics in roxygen2 markdown
• docs!: devtools::document()
• build!: update targets pipeline to reflect all Log-transform yi estimates prior to fitting MA mod #118 changes
• Increment version number to 2.6.0.9004
• feat!: update downstream fn meta_analyse_datasets() post-Log-transform yi estimates prior to fitting MA mod #118 updates
• feat!: update meta-analysis function arguments cf. changes in bdf5375 Log-transform yi estimates prior to fitting MA mod #118
• bug!: bug-fixes after testing Log-transform yi estimates prior to fitting MA mod #118 on yi pipeline
• style: indentation
• Increment version number to 2.6.0.9005
• build!: fix missing comma between target arguments style: fix indenation
• docs!: devtools::document()
• - docs!: update @imports roxygen2 documentation for all functions #102 - style: use comments to structure function. rearrange condition checks, and helper functions. update indentation. Upkeep for ManyEcoEvo (2024) #97
• docs!: roxygen2 documentation for all functions #102 add @import* calls style: fix indentation and spacing Upkeep for ManyEcoEvo (2024) #97
• docs!: update @import tags style: fix indentation, spacing, reorganise subsections
• add TODO comment
• docs!: devtools::document() roxygen2 documentation for all functions #102
• build!: renv::snapshot()
• build!: set pipeline targets seed
• build!: BREAKING CHANGES targets::tar_make()
• Increment version

[codefactor-io]

CodeFactor found an issue: Put a space after a comma.

It's currently on:
R\generate_outlier_subsets.R:264
Commit 79be4c8

[codefactor-io]

CodeFactor found multiple issues last seen at 79be4c8:

Add a terminal newline.

• R\log_transform_yi.R:42
• R\convert_predictions.R:137

[egouldo]

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