-
Notifications
You must be signed in to change notification settings - Fork 3
/
snyderome.settings
8 lines (8 loc) · 1.24 KB
/
snyderome.settings
1
2
3
4
5
6
7
8
PIPELINE=exome
NAME=Snyderome
#INPUT_FASTQ=paired[s3://gapp-west/[email protected]/sample_exome/025_Bioplanet_GCAT_30x/gcat_set_025_1.fastq.gz,s3://gapp-west/[email protected]/sample_exome/025_Bioplanet_GCAT_30x/gcat_set_025_2.fastq.gz]
INPUT_FASTQ="paired[s3://gapp-east/snyderome/A804NLABXX.s_1_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_1_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_2_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_2_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_3_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_3_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_4_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_4_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_5_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_5_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_6_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_6_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_7_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_7_2.fq.gz] paired[s3://gapp-east/snyderome/A804NLABXX.s_8_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_8_2.fq.gz]"
#INPUT_FASTQ="paired[s3://gapp-east/snyderome/A804NLABXX.s_1_1.fq.gz,s3://gapp-east/snyderome/A804NLABXX.s_1_2.fq.gz]"
K_ANALYSIS=WGS
#CHROMOSOMES=chr22
#GATK_JAR=~/GenomeAnalysisTK.jar