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DESCRIPTION
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DESCRIPTION
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Package: funOmics
Title: Aggregating Omics Data into Higher-Level Functional Representations
Version: 0.99.8
Authors@R: c(
person("Elisa", "Gomez de Lope", role = c("aut", "cre"), email = "[email protected]",comment=c(ORCID="0000-0002-7115-7393")),
person("Enrico", "Glaab", role = "ctb", email = "[email protected]", comment = c(ORCID="0000-0003-3977-7469")))
Description: The 'funOmics' package ggregates or summarizes omics data into
higher level functional representations such as GO terms gene sets
or KEGG metabolic pathways. The aggregated data matrix represents
functional activity scores that facilitate the analysis of
functional molecular sets while allowing to reduce dimensionality
and provide easier and faster biological interpretations.
Coordinated functional activity scores can be as informative as
single molecules!
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.1
URL: https://github.com/elisagdelope/funomics
BugReports: https://github.com/elisagdelope/funomics/issues
Depends:
R (>= 4.4.0),
NMF
Imports: NMF, pathifier, stats, KEGGREST, AnnotationDbi, org.Hs.eg.db, dplyr, stringr
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0),
MultiAssayExperiment,
SummarizedExperiment,
airway
VignetteBuilder: knitr
VignetteIndexEntry: funomics_vignette Vignette
biocViews: Software, Transcriptomics, Metabolomics, Proteomics, Pathways, GO, KEGG
Config/testthat/edition: 3