diff --git a/.cruft.json b/.cruft.json
index 6822a87..3a502c0 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/elixir-cloud-aai/cookiecutter-python",
-  "commit": "dc0f027857b60851e3cb40663f662add4343ef5a",
+  "commit": "5c50248527fc91252e31cb971aad02a455f64e1c",
   "checkout": null,
   "context": {
     "cookiecutter": {
diff --git a/.github/workflows/code_quality.yaml b/.github/workflows/code_quality.yaml
index a13fb2b..f4d2add 100644
--- a/.github/workflows/code_quality.yaml
+++ b/.github/workflows/code_quality.yaml
@@ -22,8 +22,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--only=lint --no-root"
-          poetry-export-options: "--only=lint"
+          poetry-install-options: "--only=code_quality --no-root"
+          poetry-export-options: "--only=code_quality --no-root"
 
       - name: Check code style
         run: poetry run ruff format --check
@@ -40,8 +40,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--only=lint --no-root"
-          poetry-export-options: "--only=lint"
+          poetry-install-options: "--only=code_quality --no-root"
+          poetry-export-options: "--only=code_quality"
 
       - name: Check code quality
         run: poetry run ruff check .
@@ -58,8 +58,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--only=lint --no-root"
-          poetry-export-options: "--only=lint"
+          poetry-install-options: "--only=code_quality --no-root"
+          poetry-export-options: "--only=code_quality"
 
       - name: Check spellings
         run: poetry run typos .
@@ -76,8 +76,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--with=types --no-root"
-          poetry-export-options: "--with=types"
+          poetry-install-options: "--with=code_quality,types --no-root"
+          poetry-export-options: "--with=code_quality,types"
 
       - name: Check types
         run: poetry run mypy tus_storagehandler/
diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml
index 1b417b5..2c6799b 100644
--- a/.github/workflows/docs.yaml
+++ b/.github/workflows/docs.yaml
@@ -22,8 +22,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--with=docs"
-          poetry-export-options: "--with=docs"
+          poetry-install-options: "--with=docs,types --no-root"
+          poetry-export-options: "--with=docs,types"
 
       - name: Generate API docs
         run: |
diff --git a/.github/workflows/update.yaml b/.github/workflows/update.yaml
index 4edade9..10030bb 100644
--- a/.github/workflows/update.yaml
+++ b/.github/workflows/update.yaml
@@ -17,8 +17,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--with=misc --no-root"
-          poetry-export-options: "--with=misc"
+          poetry-install-options: "--only=misc --no-root"
+          poetry-export-options: "--only=misc"
 
       - name: Update project structure
         run: |
diff --git a/.github/workflows/vulnerability.yaml b/.github/workflows/vulnerability.yaml
index 5bb93b5..270104c 100644
--- a/.github/workflows/vulnerability.yaml
+++ b/.github/workflows/vulnerability.yaml
@@ -22,8 +22,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--only=security --no-root"
-          poetry-export-options: "--only=security"
+          poetry-install-options: "--only=vulnerability --no-root"
+          poetry-export-options: "--only=vulnerability"
 
       - name: Check code vulnerabilities with bandit
         run: poetry run bandit -c pyproject.toml -r tus_storagehandler/
@@ -40,8 +40,8 @@ jobs:
         with:
           os: ${{ job.os }}
           python-version: '3.11'
-          poetry-install-options: "--only=security --no-root"
-          poetry-export-options: "--only=security"
+          poetry-install-options: "--only=vulnerability --no-root"
+          poetry-export-options: "--only=vulnerability"
 
       - name: Check dependency vulnerabilities with safety
         run: poetry run safety check --full-report
diff --git a/README.md b/README.md
index ea5c123..a41b9ff 100644
--- a/README.md
+++ b/README.md
@@ -47,12 +47,31 @@ Here are certain commands that you might find useful:
 make v
 ```
 
-- Installing dependencies
+- Installing all dependencies including optional dependencies
 
 ```sh
 make i
 ```
 
+> **Note**: This project uses optional dependency groups such as `types`,
+> `code_quality`, `docs`, `vulnerability`, `test`, and `misc`. To install stubs
+> or types for the dependencies, you **must** use the following command:
+>
+> ```sh
+> poetry add types-foo --group types
+> ```
+>
+> Replace `types-foo` with the name of the package for the types. All runtime
+> dependencies should be added to the `default` group. For example, to install
+> `requests` and its type stubs, run:
+>
+> ```sh
+> poetry add requests
+> poetry add types-requests --group types
+> ```
+>
+> This ensures that the type checker functions correctly.
+
 - Running tests
 
 ```sh
diff --git a/poetry.lock b/poetry.lock
index b5fbb83..ea1442b 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -154,13 +154,13 @@ chardet = ">=3.0.2"
 
 [[package]]
 name = "certifi"
-version = "2024.6.2"
+version = "2024.7.4"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
-    {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
+    {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"},
+    {file = "certifi-2024.7.4.tar.gz", hash = "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b"},
 ]
 
 [[package]]
@@ -641,13 +641,13 @@ test = ["coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre-commit",
 
 [[package]]
 name = "identify"
-version = "2.5.36"
+version = "2.6.0"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "identify-2.5.36-py2.py3-none-any.whl", hash = "sha256:37d93f380f4de590500d9dba7db359d0d3da95ffe7f9de1753faa159e71e7dfa"},
-    {file = "identify-2.5.36.tar.gz", hash = "sha256:e5e00f54165f9047fbebeb4a560f9acfb8af4c88232be60a488e9b68d122745d"},
+    {file = "identify-2.6.0-py2.py3-none-any.whl", hash = "sha256:e79ae4406387a9d300332b5fd366d8994f1525e8414984e1a59e058b2eda2dd0"},
+    {file = "identify-2.6.0.tar.gz", hash = "sha256:cb171c685bdc31bcc4c1734698736a7d5b6c8bf2e0c15117f4d469c8640ae5cf"},
 ]
 
 [package.extras]
@@ -1063,18 +1063,18 @@ files = [
 
 [[package]]
 name = "pydantic"
-version = "2.8.0"
+version = "2.8.2"
 description = "Data validation using Python type hints"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "pydantic-2.8.0-py3-none-any.whl", hash = "sha256:ead4f3a1e92386a734ca1411cb25d94147cf8778ed5be6b56749047676d6364e"},
-    {file = "pydantic-2.8.0.tar.gz", hash = "sha256:d970ffb9d030b710795878940bd0489842c638e7252fc4a19c3ae2f7da4d6141"},
+    {file = "pydantic-2.8.2-py3-none-any.whl", hash = "sha256:73ee9fddd406dc318b885c7a2eab8a6472b68b8fb5ba8150949fc3db939f23c8"},
+    {file = "pydantic-2.8.2.tar.gz", hash = "sha256:6f62c13d067b0755ad1c21a34bdd06c0c12625a22b0fc09c6b149816604f7c2a"},
 ]
 
 [package.dependencies]
 annotated-types = ">=0.4.0"
-pydantic-core = "2.20.0"
+pydantic-core = "2.20.1"
 typing-extensions = [
     {version = ">=4.12.2", markers = "python_version >= \"3.13\""},
     {version = ">=4.6.1", markers = "python_version < \"3.13\""},
@@ -1085,99 +1085,100 @@ email = ["email-validator (>=2.0.0)"]
 
 [[package]]
 name = "pydantic-core"
-version = "2.20.0"
+version = "2.20.1"
 description = "Core functionality for Pydantic validation and serialization"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "typos-1.23.1-py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:34d2f693111fedffeec7fe5cf096ec8cff9c0b01f2c13e4ddee34bd063aa2c6f"},
+    {file = "typos-1.23.1-py3-none-win32.whl", hash = "sha256:822ea2ba610f91a7f1c037d91c9f5d12cf8d92e3f6470747dd76e85711558dc3"},
+    {file = "typos-1.23.1-py3-none-win_amd64.whl", hash = "sha256:d7fedee1b0c9aa2a796bffa5d30285cc7a32eb4850336b91c84ef672852ddd7f"},
+    {file = "typos-1.23.1.tar.gz", hash = "sha256:390b071b2081d61d3c1718b1c05b92756692ed066907f04caf7297c9a25c7eee"},
 ]
 
 [[package]]
@@ -1888,4 +1889,4 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.11"
-content-hash = "f5865ff059db34940cdf59ada5d4486fb5e9f3f56072cf2569941f3db0fe8068"
+content-hash = "baf2e15021454cbadba155083df44db99f81c9e636220efb74b03c1af3b2adaf"
diff --git a/pyproject.toml b/pyproject.toml
index f0c5c9d..05054db 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,6 +25,17 @@ version = "0.1.0"
 [tool.poetry.dependencies]
 python = ">=3.11"
 
+[tool.poetry.group.code_quality]
+optional = true
+
+[tool.poetry.group.code_quality.dependencies]
+mypy = ">=1.10.0,<2.0.0"
+ruff = ">=0.4.10,<1.0.0"
+typos = ">=1.22.8,<2.0.0"
+
+[tool.poetry.group.docs]
+optional = true
+
 [tool.poetry.group.docs.dependencies]
 added-value = ">=0.24.0,<1.0.0"
 docutils = "0.20.1"
@@ -34,25 +45,27 @@ sphinx = "^7.3.7"
 sphinx-autodoc-typehints = "^2.1.0"
 tomli = ">=2.0.1,<3.0.0"
 
-[tool.poetry.group.lint.dependencies]
-ruff = ">=0.4.10,<1.0.0"
-typos = ">=1.22.8,<2.0.0"
+[tool.poetry.group.misc]
+optional = true
 
 [tool.poetry.group.misc.dependencies]
 cruft = ">=2.15.0,<3.0.0"
 jello = ">=1.6.0,<2.0.0"
 pre-commit = ">=3.7.1,<4.0.0"
 
-[tool.poetry.group.security.dependencies]
-bandit = ">=1.7.8,<2.0.0"
-safety = ">=3.2.0,<4.0.0"
+[tool.poetry.group.test]
+optional = true
 
 [tool.poetry.group.test.dependencies]
 pytest = ">=8.2.2,<9.0.0"
 pytest-cov = ">=5.0.0,<=6.0.0"
 
-[tool.poetry.group.types.dependencies]
-mypy = ">=1.10.0,<2.0.0"
+[tool.poetry.group.vulnerability]
+optional = true
+
+[tool.poetry.group.vulnerability.dependencies]
+bandit = ">=1.7.8,<2.0.0"
+safety = ">=3.2.0,<4.0.0"
 
 [tool.ruff]
 indent-width = 4