From 45ca5f4c91ba3aadd18aa32db416f2281db9dc18 Mon Sep 17 00:00:00 2001
From: Javed Habib <100477031+JaeAeich@users.noreply.github.com>
Date: Thu, 19 Dec 2024 23:07:26 +0530
Subject: [PATCH] ci: fix broken CI pipeline (#95)

* minor changes

* pin pip version
---
 .github/workflows/main.yml         | 5 ++++-
 pro_wes/ga4gh/wes/workflow_runs.py | 4 +++-
 requirements.txt                   | 2 +-
 3 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 2b5d2c7..10f2ad6 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -18,6 +18,9 @@ jobs:
         uses: actions/setup-python@v4
         with:
           python-version: "3.10"
+      - name: Pin pip version
+        run: |
+          python -m pip install --upgrade "pip<24.1"
       - name: Install requirements
         run: |
           pip install -r requirements_dev.txt
@@ -46,7 +49,7 @@ jobs:
         with:
           python-version: "3.10"
       - name: Deploy app
-        run: docker-compose up -d --build
+        run: docker compose up -d --build
       - name: Wait for app startup
         run: sleep 20
       - name: Probe endpoint
diff --git a/pro_wes/ga4gh/wes/workflow_runs.py b/pro_wes/ga4gh/wes/workflow_runs.py
index d3fd27e..74b97a8 100644
--- a/pro_wes/ga4gh/wes/workflow_runs.py
+++ b/pro_wes/ga4gh/wes/workflow_runs.py
@@ -482,7 +482,9 @@ def _validate_run_request(
         """
         dict_of_lists = form_data.to_dict(flat=False)
         # flatten single item lists
-        dict_atomic = {k: v[0] if len(v) == 1 else v for k, v in dict_of_lists.items()}
+        dict_atomic: dict = {
+            k: v[0] if len(v) == 1 else v for k, v in dict_of_lists.items()
+        }
         # remove 'workflow_attachment' field
         dict_atomic.pop("workflow_attachment", None)
         model_instance = RunRequest(**dict_atomic)
diff --git a/requirements.txt b/requirements.txt
index fab1bb4..f59dbf3 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,4 +1,4 @@
 connexion<3
 email-validator>=2.1.0,<3
-foca>=0.12.1
+foca==0.12.1
 gunicorn>=22