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HCS Parser: support CZI format #3767

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SilinPavel opened this issue Nov 12, 2024 · 0 comments
Open

HCS Parser: support CZI format #3767

SilinPavel opened this issue Nov 12, 2024 · 0 comments
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kind/enhancement New feature or request

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@SilinPavel
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Background
New format CZI should be supported in HCS parser and generate ome.tiff which can be viewed by Cloud-Pipeline HCS viewer

For the CZI images the next logic should be implemented:

  • To support existing Plate-Well approach, CZI image will be generated as 1 plate : 1x1 well picture
  • Additional settings should be added to the hcs file:
      "video": False,
      "analysis": False,
      "plate_layout": False,
      "well_layout": False,
      "original_image": False,
      "timeseries_layout": False
  • Tagging should work the same way as for TIFF
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Labels
kind/enhancement New feature or request
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