diff --git a/CHANGELOG.md b/CHANGELOG.md index cec0f3b..93fe714 100755 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Fixed - Non-deterministic SNP output when `--phased` is on. - Post-Clair3 `whatshap` phases only SNVs to match whatshap<2.0 behaviour. +- Updated ont-spectre to v0.2.2 to fix an apparent callCNV hang. - Updated `straglr` to v1.4.5 to fix possible ZeroDivisionError during call_str. ### Changed - Updated `modkit` to v0.3.0. diff --git a/nextflow.config b/nextflow.config index de651b9..a49a809 100755 --- a/nextflow.config +++ b/nextflow.config @@ -135,7 +135,7 @@ params { e2l_mod_tag = "shae137452eb41f5f12b790774cafe15bc97f48d4d0" cnv_tag = "sha428cb19e51370020ccf29ec2af4eead44c6a17c2" str_tag = "shadd2f2963fe39351d4e0d6fa3ca54e1064c6ec057" - spectre_tag = "sha5a2890023dc7a7899f47585103b4f5762fb9d1b3" + spectre_tag = "sha49a9fe474da9860f84f08f17f137b47a010b1834" snpeff_tag = "sha313729d816872d70b410752001a0e2654eb88807" common_sha = "sha338caea0a2532dc0ea8f46638ccc322bb8f9af48" }