_pkgdown.yml

url: epiforecasts.io/WuhanSeedingVsTransmission/
template:
  params:
    bootswatch: lumen

development:
  mode: release

navbar:
  type: inverse
  left:
    - text: "Home"
      href: index.html
    - text: "Analysis"
      href: articles/output.html
    - text: News
      href: news/index.html
    - icon: fa-file-code-o 
      text: "Functions"
      href: reference/index.html
  right:
    - icon: fa-github
      href: https://github.com/epiforecasts/WuhanSeedingVsTransmission



reference:
  - title: Fit the reporting delay function
    desc: Functions that allow the use of a fitted reporting delay function
    contents:
      - get_linelist
      - get_rep_sample_fun
      - fitted_delay_sample_func
      
  - title: Sample from the serial interval distribution
    desc: Functions that parameterise distributions based on a mean and standard deviation
    contents: 
       - rgamma_with_mean_sd
       - rweibull_with_mean_sd
  - title: Run the branching process
    desc: Functions used to run the branching process
    contents:
      - run_sim
  - title: Run scenario analysis
    desc: Functions that facilitate running the scenario analysis
    contents:
      - contains("scenario")
  - title: Condition on data
    desc: Functions that allow model simulations to be conditioned on observed data.
    contents:
      - contains("condition")
  - title: Evaluate output
    desc: Functions that facilitate evaluating the output of the analysis.
    contents:
      - summarise_end_r0
      - make_duration_size_table
      - contains("plot")