CITATION.cff

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title: Ultimate ATAC-seq Data Processing & Quantification Pipeline
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - affiliation: CeMM Research Center for Molecular Medicine
    given-names: Stephan
    family-names: Reichl
    orcid: 'https://orcid.org/0000-0001-8555-7198'
  - given-names: Bekir
    family-names: Ergüner
    orcid: 'https://orcid.org/0000-0001-5475-0892'
    affiliation: CeMM Research Center for Molecular Medicine
  - given-names: Daniele
    family-names: Barreca
    orcid: 'https://orcid.org/0000-0003-3373-9939'
    affiliation: CeMM Research Center for Molecular Medicine
  - given-names: Lukas
    family-names: Folkman
    orcid: 'https://orcid.org/0000-0002-5811-8875'
    affiliation: CeMM Research Center for Molecular Medicine
  - given-names: Fangwen
    family-names: Zhao
    affiliation: CeMM Research Center for Molecular Medicine
  - given-names: Rob
    family-names: ter Horst
    orcid: 'https://orcid.org/0000-0003-0576-5873'
    affiliation: CeMM Research Center for Molecular Medicine
  - given-names: Lina
    family-names: Dobnikar
    affiliation: CeMM Research Center for Molecular Medicine
  - given-names: Christoph
    family-names: Bock
    orcid: 'https://orcid.org/0000-0001-6091-3088'
    affiliation: CeMM Research Center for Molecular Medicine
identifiers:
  - type: doi
    value: 10.5281/zenodo.6323634
    description: >-
      This DOI represents all versions, and will always
      resolve to the latest one.
repository-code: 'https://github.com/epigen/atacseq_pipeline'
url: 'https://epigen.github.io/atacseq_pipeline/'
abstract: >-
  A Snakemake implementation of the BSF's ATAC-seq Data
  Processing Pipeline extended by downstream quantification 
  and annotation steps using Bash and Python.
keywords:
  - Bioinformatics
  - ATAC-seq
  - Epigenetics
  - Workflow
  - Snakemake
license: MIT