diff --git a/config/README.md b/config/README.md index 30e96e7..288ebd8 100644 --- a/config/README.md +++ b/config/README.md @@ -4,7 +4,9 @@ You need one configuration file to configure the analyses and one annotation fil - project configuration (`config/config.yaml`): Different for every project and configures the analyses to be performed. - sample annotation (annotation): CSV file consisting of four mandatory columns. - - name: A unique name of the dataset (tip: keep it short but descriptive). - - data: Path to the tabular data as comma separated table (CSV). - - metadata: Path to the metadata as comma separated table (CSV) with the first column being the index/identifier of each observation/sample and every other column metadata for the respective observation (either numeric or categorical, not mixed). **No NaN or empty values allowed.** + - name: A unique name for the dataset (tip: keep it short but descriptive). + - data: Path to the tabular data as a comma-separated table (CSV). + - metadata: Path to the metadata as a comma-separated table (CSV) with the first column being the index/identifier of each observation/sample and every other column metadata for the respective observation (either numeric or categorical, not mixed). **No NaN or empty values allowed.** - samples_by_features: Boolean indicator if the data matrix is observations/samples (rows) x features (columns): 0==no, 1==yes. + +Specify workflow-specific `resources` or command line arguments (CLI) in the workflow profile `workflow/profiles/default.config.yaml`, which supersedes global Snakemake profiles. \ No newline at end of file diff --git a/workflow/Snakefile b/workflow/Snakefile index 648cd52..135b2b6 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -8,6 +8,7 @@ import pandas as pd import yaml from snakemake.utils import min_version +##### set minimum Snakemake version ##### min_version("8.20.1") ##### module name #####