diff --git a/analyses/simulate_transmission/epidemics_odin_interop.qmd b/analyses/simulate_transmission/epidemics_odin_interop.qmd index 6f924aa..71f3832 100644 --- a/analyses/simulate_transmission/epidemics_odin_interop.qmd +++ b/analyses/simulate_transmission/epidemics_odin_interop.qmd @@ -95,7 +95,7 @@ close_schools <- epidemics::intervention( close_schools # Define an epidemic SEIR model in {odin} -sir <- odin::odin({ +seir <- odin::odin({ # NOTE: crude time-dependence of transmission rate # similar to a `` beta_reduce[] <- if (t > intervention_interval[1] && t < intervention_interval[2]) (1.0 - reduction[i]) else 1 @@ -152,7 +152,7 @@ sir <- odin::odin({ }) # Initialise model and run over time 0 - 600 -mod <- sir$new( +mod <- seir$new( beta = 1.5 / 7, reduction = close_schools$reduction[,], intervention_interval = c(close_schools$time_begin, close_schools$time_end),