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<!DOCTYPE html>
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta name="description" content="Metaviz is a scientific information visualization tool for metagenomic data, used to aid in the exploration of the hierarchical taxonomy and abundance matrix.">
<title>Metaviz</title>
<link rel="shortcut icon" href="css/epiviz_2_icon.png"/>
<!-- CSS -->
<link href="css/fa/css/font-awesome.css" rel="stylesheet"/>
<!-- Icons -->
<link href="css/icomoon/epiviz-icons.css" rel="stylesheet"/>
<!--Semantic-->
<link rel="stylesheet" href="src/epiviz/browser/semantic/dist/semantic.min.css">
<link rel="stylesheet" href="src/epiviz/browser/semantic-ui-range-master/range.css">
<link rel="stylesheet" href="src/epiviz/browser/browser.css">
<!-- JQuery UI -->
<link href="css/theme/jquery-ui-1.8.9.custom.css" rel="stylesheet"/>
<link href="css/theme/jquery.ui.selectmenu.css" rel="stylesheet"/>
<link href="css/theme/ui.panel.css" rel="stylesheet"/>
<link href="css/theme/ui.multiselect.css" rel="stylesheet"/>
<link href="css/farbtastic-color-picker/farbtastic.css" rel="stylesheet" />
<link href="css/DataTables-1.9.4/media/css/demo_table.css" rel="stylesheet" />
<link href="css/DataTables-1.9.4/media/css/demo_table_jui.css" rel="stylesheet" />
<link href="src/lib/jquery/DataTables-1.9.4/extras/TableTools/media/css/TableTools.css" rel="stylesheet" />
<link href="css/dropdown-check-list-1.4/css/ui.dropdownchecklist.standalone.css" rel="stylesheet" />
<!-- Future tooltip: <link href="css/qtip/jquery.qtip.min.css" rel="stylesheet" />-->
<!-- Code editor -->
<link rel="stylesheet" href="css/codemirror-4.5/lib/codemirror.css">
<!-- EpiViz CSS -->
<link rel="stylesheet" type="text/css" href="css/main.css"/>
<link rel="stylesheet" type="text/css" href="css/svg.css"/>
<script src="src/epiviz-min/epiviz-min.js"></script>
<!-- Scripts -->
<!-- JQuery and JQuery UI scripts -->
<script src="src/lib/jquery/jquery-1.8.2.js"></script>
<script src="src/lib/jquery/jquery-ui-1.9.1.custom.js"></script>
<script src="src/lib/jquery/jquery.multi-accordion-1.5.3.js"></script>
<script src="src/lib/jquery/jquery.ui.selectmenu.js"></script>
<script src="src/lib/jquery/ui.panel.min.js"></script>
<script src="src/lib/jquery/ui.multiselect.js"></script>
<script src="src/lib/jquery/jquery.watermark.min.js"></script>
<script src="src/lib/jquery/jquery.layout-latest.js"></script>
<script src="src/lib/jquery/jquery.activity-indicator-1.0.0.min.js"></script>
<script src="src/lib/jquery/farbtastic-color-picker/farbtastic.js"></script>
<script src="src/lib/jquery/DataTables-1.9.4/media/js/jquery.dataTables.js"></script>
<script src="src/lib/jquery/DataTables-1.9.4/extras/TableTools/media/js/ZeroClipboard.js"></script>
<script src="src/lib/jquery/DataTables-1.9.4/extras/TableTools/media/js/TableTools.js"></script>
<script src="src/lib/jquery/DataTables-1.9.4/extras/ColumnFilter/media/js/jquery.dataTables.columnFilter.js"></script>
<script src="src/lib/jquery/dropdown-check-list-1.4/js/ui.dropdownchecklist.js"></script>
<!-- D3 -->
<script src="src/lib/d3/d3.v3.js"></script>
<!-- String formatting -->
<script src="src/lib/sprintf-0.6.js"></script>
<script src="src/lib/jquery/globalize/globalize.js"></script>
<!-- Expression evaluation -->
<script src="src/lib/expression-parser/parser.js"></script>
<!-- Code editor -->
<script src="src/lib/codemirror-4.5/lib/codemirror.js"></script>
<script src="src/lib/codemirror-4.5/addon/edit/matchbrackets.js"></script>
<script src="src/lib/codemirror-4.5/addon/comment/continuecomment.js"></script>
<script src="src/lib/codemirror-4.5/addon/comment/comment.js"></script>
<script src="src/lib/codemirror-4.5/mode/javascript/javascript.js"></script>
<!-- Google Closure -->
<script src="src/lib/closure/goog/base.js"></script>
<script src="src/lib/closure/goog/structs/collection.js"></script>
<!-- lightweight es6 promises -->
<script src="src/lib/es6-promise/Promise.js"></script>
<!-- canvg -->
<script src="src/lib/canvg/rgbcolor.js"></script>
<script src="src/lib/canvg/StackBlur.js"></script>
<script src="src/lib/canvg/canvg.js"></script>
<!-- html2canvas -->
<script src="src/lib/html2canvas/html2canvas.js"></script>
<script src="src/lib/html2canvas/html2canvas.svg.js"></script>
<!-- jsPDF -->
<script src="src/lib/jsPDF/BlobBuilder.js"></script>
<script src="src/lib/jsPDF/FileSaver.js"></script>
<script src="src/lib/jsPDF/jspdf.debug.js"></script>
<!-- AnnoJS -->
<link rel="stylesheet" type="text/css" href="src/lib/annojs/anno.css"/>
<script src="src/lib/annojs/anno.js"></script>
<!-- EpiViz framework -->
<script src="src/epiviz/ui/print-manager.js"></script>
<script src="src/epiviz/deferred/deferred.js"></script>
<script src="src/epiviz/events/event-listener.js"></script>
<script src="src/epiviz/events/event.js"></script>
<script src="src/epiviz/events/event-result.js"></script>
<script src="src/epiviz/utils/utils.js"></script>
<script src="src/epiviz/utils/iterable.js"></script>
<script src="src/epiviz/utils/iterator.js"></script>
<script src="src/epiviz/utils/iterable-array.js"></script>
<script src="src/epiviz/measurements/measurement.js"></script>
<script src="src/epiviz/measurements/measurement-set.js"></script>
<script src="src/epiviz/measurements/measurement-hashtable.js"></script>
<script src="src/epiviz/measurements/measurements-manager.js"></script>
<script src="src/epiviz/data/request-stack.js"></script>
<script src="src/epiviz/datatypes/genomic-range.js"></script>
<script src="src/epiviz/datatypes/genomic-data.js"></script>
<script src="src/epiviz/datatypes/seq-info.js"></script>
<script src="src/epiviz/datatypes/genomic-array.js"></script>
<script src="src/epiviz/datatypes/genomic-range-array.js"></script>
<script src="src/epiviz/datatypes/feature-value-array.js"></script>
<script src="src/epiviz/datatypes/partial-summarized-experiment.js"></script>
<script src="src/epiviz/datatypes/measurement-genomic-data.js"></script>
<script src="src/epiviz/datatypes/measurement-genomic-data-wrapper.js"></script>
<script src="src/epiviz/datatypes/measurement-genomic-data-array-wrapper.js"></script>
<script src="src/epiviz/datatypes/row-item-impl.js"></script>
<script src="src/epiviz/datatypes/map-genomic-data.js"></script>
<script src="src/epiviz/datatypes/item-filtered-genomic-data.js"></script>
<script src="src/epiviz/datatypes/measurement-ordered-genomic-data.js"></script>
<script src="src/epiviz/datatypes/measurement-aggregated-genomic-data.js"></script>
<script src="src/epiviz/data/cache.js"></script>
<script src="src/epiviz/data/message-type.js"></script>
<script src="src/epiviz/data/request.js"></script>
<script src="src/epiviz/data/response.js"></script>
<script src="src/epiviz/data/data-provider.js"></script>
<script src="src/epiviz/data/empty-response-data-provider.js"></script>
<script src="src/epiviz/data/data-provider-factory.js"></script>
<script src="src/epiviz/data/data-manager.js"></script>
<script src="src/epiviz/data/webserver-data-provider.js"></script>
<script src="src/epiviz/data/metagenomics-data-provider.js"></script> <!-- TODO: Delete! -->
<script src="src/epiviz/ui/charts/tree/node-selection-type.js"></script>
<script src="src/epiviz/data/epiviz-api-data-provider.js"></script><!-- TODO: Move -->
<script src="src/epiviz/caja/caja-standalone.js"></script>
<script src="src/epiviz/utils/expression-parser.js"></script>
<script src="src/epiviz/ui/web-args-manager.js"></script>
<script src="src/epiviz/ui/controls/vis-config-selection.js"></script>
<script src="src/epiviz/ui/charts/color-palette.js"></script>
<script src="src/epiviz/data/websocket-data-provider.js"></script>
<script src="src/epiviz/deferred/promise.js"></script>
<script src="src/epiviz/config.js"></script>
<script src="src/epiviz/ui/controls/control.js"></script>
<script src="src/epiviz/ui/controls/dialog.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/cluster-node.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/cluster-subtree.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/cluster-leaf.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/cluster-tree.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/clustering-metric.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/clustering-linkage.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/hierarchical-clustering-algorithm.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/euclidean-metric.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/complete-linkage.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/none-clustering.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/agglomerative-clustering.js"></script>
<script src="src/epiviz/ui/charts/transform/clustering/clustering-algorithm-factory.js"></script>
<script src="src/epiviz/ui/charts/markers/measurement-aggregator.js"></script>
<script src="src/epiviz/ui/charts/markers/visualization-marker.js"></script>
<script src="src/epiviz/ui/charts/axis.js"></script>
<script src="src/epiviz/ui/charts/margins.js"></script>
<script src="src/epiviz/ui/charts/custom-setting.js"></script>
<script src="src/epiviz/ui/charts/vis-object.js"></script>
<script src="src/epiviz/ui/charts/visualization-properties.js"></script>
<script src="src/epiviz/ui/charts/vis-event-args.js"></script>
<script src="src/epiviz/ui/charts/display-type.js"></script>
<script src="src/epiviz/ui/charts/visualization.js"></script>
<script src="src/epiviz/ui/charts/visualization-type.js"></script>
<script src="src/epiviz/ui/charts/chart-type.js"></script>
<script src="src/epiviz/ui/charts/chart-object.js"></script>
<script src="src/epiviz/ui/charts/custom-charts-index.js"></script>
<script src="src/epiviz/ui/charts/chart.js"></script>
<script src="src/epiviz/ui/charts/track.js"></script>
<script src="src/epiviz/ui/charts/plot.js"></script>
<script src="src/epiviz/ui/charts/data-structure-visualization.js"></script>
<script src="src/epiviz/ui/charts/tree/node.js"></script>
<script src="src/epiviz/ui/charts/tree/ui-node.js"></script>
<script src="src/epiviz/ui/charts/tree/hierarchy-visualization.js"></script>
<script src="src/epiviz/ui/charts/track-type.js"></script>
<script src="src/epiviz/ui/charts/plot-type.js"></script>
<script src="src/epiviz/ui/charts/data-structure-visualization-type.js"></script>
<script src="src/epiviz/ui/charts/tree/hierarchy-visualization-type.js"></script>
<script src="src/epiviz/plugins/charts/blocks-track.js"></script>
<script src="src/epiviz/plugins/charts/blocks-track-type.js"></script>
<script src="src/epiviz/plugins/charts/line-track.js"></script>
<script src="src/epiviz/plugins/charts/line-track-type.js"></script>
<script src="src/epiviz/plugins/charts/stacked-line-track.js"></script>
<script src="src/epiviz/plugins/charts/stacked-line-track-type.js"></script>
<script src="src/epiviz/plugins/charts/scatter-plot.js"></script>
<script src="src/epiviz/plugins/charts/scatter-plot-type.js"></script>
<script src="src/epiviz/plugins/charts/genes-track.js"></script>
<script src="src/epiviz/plugins/charts/genes-track-type.js"></script>
<script src="src/epiviz/plugins/charts/heatmap-plot.js"></script>
<script src="src/epiviz/plugins/charts/heatmap-plot-type.js"></script>
<script src="src/epiviz/plugins/charts/line-plot.js"></script>
<script src="src/epiviz/plugins/charts/line-plot-type.js"></script>
<script src="src/epiviz/plugins/charts/stacked-line-plot.js"></script>
<script src="src/epiviz/plugins/charts/stacked-line-plot-type.js"></script>
<script src="src/epiviz/plugins/charts/pca-scatter-plot.js"></script>
<script src="src/epiviz/plugins/charts/pca-scatter-plot-type.js"></script>
<script src="src/epiviz/plugins/charts/diversity-scatter-plot.js"></script>
<script src="src/epiviz/plugins/charts/diversity-scatter-plot-type.js"></script>
<script src="src/epiviz/ui/charts/tree/icicle.js"></script>
<script src="src/epiviz/ui/charts/tree/icicle-type.js"></script>
<script src="src/epiviz/ui/charts/chart-factory.js"></script>
<script src="src/epiviz/ui/charts/decoration/visualization-decoration.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-option-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/remove-chart-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/save-chart-button.js"></script>
<script src="src/epiviz/ui/controls/color-picker-dialog.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-colors-button.js"></script>
<script src="src/epiviz/ui/controls/message-dialog.js"></script>
<script src="src/epiviz/ui/controls/custom-settings-dialog.js"></script>
<script src="src/epiviz/ui/charts/decoration/custom-settings-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/toggle-tooltip-button.js"></script>
<script src="src/epiviz/ui/controls/code-dialog.js"></script>
<script src="src/epiviz/ui/charts/decoration/code-button.js"></script>
<script src="src/epiviz/ui/controls/code-control.js"></script>
<script src="src/epiviz/ui/controls/edit-code-control.js"></script>
<script src="src/epiviz/ui/charts/decoration/edit-code-button.js"></script>
<script src="src/epiviz/ui/controls/marker-code-control.js"></script>
<script src="src/epiviz/ui/charts/decoration/marker-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-filter-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/hierarchy-filter-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-color-by-row-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-order-by-measurements-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-color-by-measurements-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-group-by-measurements-code-button.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-resize.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-tooltip.js"></script>
<script src="src/epiviz/ui/charts/decoration/chart-loader-animation.js"></script>
<script src="src/epiviz/ui/controls/data-table.js"></script>
<script src="src/epiviz/ui/controls/wizard.js"></script>
<script src="src/epiviz/ui/controls/measurements-wizard-step.js"></script>
<script src="src/epiviz/ui/controls/computed-measurements-dialog.js"></script>
<script src="src/epiviz/ui/controls/datasource-group-wizard-step.js"></script>
<script src="src/epiviz/ui/controls/save-svg-as-image-dialog.js"></script>
<script src="src/epiviz/ui/charts/tree/decoration/toggle-propagate-selection-button.js"></script>
<script src="src/epiviz/ui/tutorial.js"></script>
<script src="src/epiviz/ui/control-manager.js"></script>
<script src="src/epiviz/ui/charts/chart-manager.js"></script>
<script src="src/epiviz/workspaces/user-manager.js"></script>
<script src="src/epiviz/workspaces/workspace.js"></script>
<script src="src/epiviz/workspaces/workspace-manager.js"></script>
<script src="src/epiviz/localstorage/local-storage-manager.js"></script>
<script src="src/epiviz/ui/location-manager.js"></script>
<script src="src/epiviz/epiviz.js"></script>
<script src="src/epiviz/main.js"></script>
<script src="src/epiviz/standalone-settings.js"></script>
<script>
$(function() {
epiviz.ui.WebArgsManager.WEB_ARGS = epiviz.ui.WebArgsManager.extractWindowLocationArgs();
epiviz.workspaces.UserManager.USER_STATUS = {
loggedIn: false,
oauthProvider: null,
userData: null
};
epiviz.main();
});
</script>
</head>
<body>
<div class="ui-layout-north">
<div id="toolbar" class="toolbar-header">
<div style="float: left; margin-top: 7px; margin-left: 7px; margin-right: 7px">
<img src="img/metaviz_noversion_logo_medium.png" alt="Epiviz" width="100" height="21" />
</div>
<div id="intro-navigation" class="intro-container">
<input style="display:none;" id="text-location" class="ui-widget-content ui-corner-all" type="text"/>
<button id="moveleft" style="display:none;">Slide left</button>
<button id="moveright" style="display:none;" >Slide right</button>
<button id="zoomin" style="display:none;">Zoom in</button>
<button id="zoomout" style="display:none;">Zoom out</button>
<button id="location-settings" style="display:none;">Location Settings...</button>
</div>
<span style="display:none;" class="separator">|</span>
<button id="data-source-button">Start Here</button>
<button id="vis-menu-button">Visualizations</button>
<div class="dropdown-menu">
<ul id="vis-menu"></ul>
</div>
<button style="display:none;" id="computed-measurements-button">Computed Measurements</button>
<span class="separator">|</span>
<label for="search-box"></label>
<input id="search-box" class="ui-widget-content ui-corner-all" type="text"/>
<span class="separator">|</span>
<div id="intro-workspace" class="intro-container">
<label for="save-workspace-text"></label>
<input id="save-workspace-text" class="ui-widget-content ui-corner-all" type="text"/>
<button id="save-workspace-button">Save Workspace</button>
<button id="revert-workspace-button">Revert Workspace Changes</button>
<button id="delete-workspace-button">Delete Active Workspace</button>
</div>
<span class="separator">|</span>
<button id="help-button">Help</button>
<button id="help-tutorials">Tutorials</button>
<button id="save-page">Screenshot</button>
</div>
</div>
<div id="pagemain" class="ui-layout-center">
<div id="feature-view"></div>
<div id="location-view"></div>
<div id="data-structure-view"></div>
</div>
<div id="pagefooter" class="ui-layout-south"></div>
<div id="dialogs">
<div id="location-settings-dialog" title="Location Settings">
<table>
<tr>
<td><label>Zoom-in Ratio:</label></td>
<td><input id="zoomin-ratio-text" type="text" /></td>
</tr>
<tr>
<td><label>Zoom-out Ratio:</label></td>
<td><input id="zoomout-ratio-text" type="text" /></td>
</tr>
<tr>
<td><label>Navigation Step Ratio:</label></td>
<td><input id="navigation-step-ratio-text" type="text" /></td>
</tr>
</table>
</div>
</div>
</body>
</html>