Performs Meta-analysis of liver expression data.
The directory search_code contains the code that was used for searching GEO and processing the search results.
- The results of this are located in
data/search_res
The data was pre-processed using the file: load_extract_sex_label.R. Briefly, each dataset was downloaded, filtered for normal liver samples, expression data normalized and mapped to genes, and sex labels extracted.
- This results in the files ds1g - ds17g.RData located in
data/processed/ - Each of these files contains an .RData object with a particular processed dataset.
The bulk of the analysis is then done using: LiverMA.Rmd.