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OpenAPI and Galaxy tools? #105

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volodymyrss opened this issue Mar 27, 2024 · 1 comment

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volodymyrss commented Mar 27, 2024 •

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@bgruening did you mention something about new support for Galaxy tools from OpenAPI?

I think it might be interesting for us, could we learn more?

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bgruening commented Mar 27, 2024

Those API are called ODC, but in the end they are OpenAPI, e.g. this one: https://ospd.geolabs.fr:8300/ogc-api/processes/OTB.BandMath

I have now a student who will try to generate from those API endpoints Galaxy tools.

Here are a few notes that I shared with your student,

One example is: https://ospd.geolabs.fr:8300/ogc-api/processes/OTB.BandMath
That should end up in something like: https://github.com/AquaINFRA/galaxy/blob/ogc_process_otb_bandmath/tools/ogc_services/OTB_BandMath.xml

You are allowed to use Python. A library that might be useful is https://github.com/manchenkoff/openapi3-parser
and https://github.com/hexylena/galaxyxml.

Inspiration you can get from https://github.com/hexylena/argparse2tool.

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