Dockerfile: Update to CNVkit version 0.7.0

docker/Dockerfile

@@ -1,21 +1,24 @@
-FROM ubuntu:14.10
+FROM ubuntu:15.10
 MAINTAINER Eric Talevich <[email protected]>
 
 ENV DEBIAN_FRONTEND noninteractive
 # RUN echo "deb http://archive.ubuntu.com/ubuntu utopic main universe" > /etc/apt/sources.list
 RUN apt-get update && apt-get install -y \
+    cython \
     libfreetype6-dev \
+    python-biopython \
     python-dev \
     python-matplotlib \
     python-numpy \
     python-pip \
+    python-reportlab \
     python-scipy \
     python-tk \
     r-base-core \
     zlib1g-dev
-RUN pip install reportlab pysam pyvcf biopython
+RUN pip install pandas pysam pyvcf
 RUN Rscript -e "source('http://bioconductor.org/biocLite.R'); biocLite('PSCBS', 'cghFLasso')"
-RUN pip install cnvkit==0.5.1
+RUN pip install cnvkit==0.7.0
 
 # ENTRYPOINT ["cnvkit.py"]
 # CMD ["--help"]