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genome2access.py #938

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Payam-Ebadi opened this issue Jan 8, 2025 · 0 comments
Open

genome2access.py #938

Payam-Ebadi opened this issue Jan 8, 2025 · 0 comments

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@Payam-Ebadi
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Hello everyone
Does anyone know what happened to the script genome2access.py? As I need it to create the antitraget bed file.

cnvkit.py antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE] [-o FILENAME] targets

positional arguments:
  targets               BED or interval file listing the targeted regions.

optional arguments:
  -h, --help            show this help message and exit
  -g FILENAME, --access FILENAME
                        Regions of accessible sequence on chromosomes (.bed), as output by genome2access.py.

Is it merged with another script? or is not recommended to create antitargets anymore for mo accurate CNV calling?

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