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host.h
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host.h
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// ****************************************
// This function reads the partition function file
// and interpolates Q
//Author: Simon Grimm
//March 2018
// *****************************************
__host__ int readPartition(Param ¶m, char (*qFilename)[160], Partition &part, double T, Molecule &m){
part.Q = (double*)malloc( m.nISO * sizeof(double));
for(int i = 0; i < m.nISO; ++i){
FILE *qFile;
qFile = fopen(qFilename[i], "r");
printf("Read partition function: %s\n", qFilename[i]);
if(qFile == NULL){
printf("Error: partition file not found %s. Path: %s\n", qFilename[i], param.path);
return 0;
}
double T0, T1;
double q0, q1, q;
double skip;
T1 = -1.0;
q1 = 1.0;
q = 1.0;
int er = 0;
for(int j = 0; j < 100000; ++j){
T0 = T1;
q0 = q1;
if(m.npfcol == 3){
er = fscanf (qFile, "%lf", &T1);
er = fscanf (qFile, "%lf", &q1);
er = fscanf (qFile, "%lf", &skip);
}
else if(m.npfcol == 2){
er = fscanf (qFile, "%lf", &T1);
er = fscanf (qFile, "%lf", &q1);
}
else{
printf("Error: partition file not specified\n");
return 0;
}
if(T0 == T1 && T0 < T && j > 0){
printf("Error: partition function not valid for given temperature. T0: %g, T: %g\n", T0, T);
return 0;
}
if(T1 > T && j == 0){
printf("Error: partition function not valid for given temperature. T1: %g, T: %g\n", T1, T);
return 0;
}
if (er <= 0){
printf("Error: partition function can not be read\n");
return 0;
}
if(T0 < T && T1 >= T){
double tt = (T - T0) / (T1 - T0);
q = (q1 - q0) * tt + q0;
if(j == 0) q = q1;
break;
}
if(j == 100000 - 1){
printf("Error: partition function not complete\n");
return 0;
}
}
fclose(qFile);
printf("Q %d T0: %g, T1: %g, q0: %g, q1: %g, q %g\n", i, T0, T1, q0, q1, q);
part.Q[i] = q;
}
return 1;
}
__host__ int read_parameters(Param ¶m, char *paramFilename, int argc, char*argv[]){
//Read parameters from param.dat file
FILE *paramFile;
paramFile = fopen(paramFilename, "r");
char sp[160];
for(int j = 0; j < 70; ++j){ //loop around all lines in the param.dat file
int c;
for(int i = 0; i < 50; ++i){
c = fgetc(paramFile);
if(c == EOF) break;
sp[i] = char(c);
if(c == '=' || c == ':'){
sp[i + 1] = '\0';
break;
}
}
if(c == EOF) break;
//read name
if(strcmp(sp, "name =") == 0){
fscanf (paramFile, "%s", param.name);
fgets(sp, 3, paramFile);
}
//read T
else if(strcmp(sp, "T =") == 0){
fscanf (paramFile, "%lf", ¶m.T);
fgets(sp, 3, paramFile);
}
//read P
else if(strcmp(sp, "P =") == 0){
fscanf (paramFile, "%lf", ¶m.P);
fgets(sp, 3, paramFile);
}
//read PFile
else if(strcmp(sp, "PFile =") == 0){
fscanf (paramFile, "%s", param.PFilename);
fgets(sp, 3, paramFile);
}
//read Species Name
else if(strcmp(sp, "Species Name =") == 0){
fscanf (paramFile, "%s", param.mParamFilename);
fgets(sp, 3, paramFile);
}
//read SpeciesFile
else if(strcmp(sp, "SpeciesFile =") == 0){
fscanf (paramFile, "%s", param.SpeciesFilename);
fgets(sp, 3, paramFile);
}
//read ciaSystem
else if(strcmp(sp, "ciaSystem =") == 0){
fscanf (paramFile, "%s", param.ciaSystem);
fgets(sp, 3, paramFile);
}
//read path
else if(strcmp(sp, "pathToData =") == 0){
fscanf (paramFile, "%s", param.path);
fgets(sp, 3, paramFile);
if(strcmp(param.path, "numin") == 0){
param.path[0] = 0;
//fgets(skip, 3, paramFile);
fscanf (paramFile, "%lf", ¶m.numin);
fgets(sp, 3, paramFile);
}
}
//read numin
else if(strcmp(sp, "numin =") == 0){
fscanf (paramFile, "%lf", ¶m.numin);
fgets(sp, 3, paramFile);
}
//read numax
else if(strcmp(sp, "numax =") == 0){
fscanf (paramFile, "%lf", ¶m.numax);
fgets(sp, 3, paramFile);
}
//read dnu
else if(strcmp(sp, "dnu =") == 0){
fscanf (paramFile, "%lf", ¶m.dnu);
fgets(sp, 3, paramFile);
}
//read Nxb
else if(strcmp(sp, "Nnu per bin =") == 0){
fscanf (paramFile, "%d", ¶m.Nxb);
fgets(sp, 3, paramFile);
}
//read cutMode
else if(strcmp(sp, "cutMode =") == 0){
fscanf (paramFile, "%d", ¶m.cutMode);
fgets(sp, 3, paramFile);
}
//read cut
else if(strcmp(sp, "cut =") == 0){
fscanf (paramFile, "%lf", ¶m.cut);
fgets(sp, 3, paramFile);
}
//read doResampling
else if(strcmp(sp, "doResampling =") == 0){
fscanf (paramFile, "%d", ¶m.doResampling);
fgets(sp, 3, paramFile);
}
//read nC
else if(strcmp(sp, "nC =") == 0){
fscanf (paramFile, "%d", ¶m.nC);
fgets(sp, 3, paramFile);
if(param.nC > def_NmaxSample){
printf("nC larger than def_NmaxSample, reduced to %d\n", def_NmaxSample);
param.nC = def_NmaxSample;
}
}
//read doTransmission
else if(strcmp(sp, "doTransmission =") == 0){
fscanf (paramFile, "%d", ¶m.doTransmission);
fgets(sp, 3, paramFile);
}
//read nTr
else if(strcmp(sp, "nTr =") == 0){
fscanf (paramFile, "%d", ¶m.nTr);
fgets(sp, 3, paramFile);
}
//read dTr
else if(strcmp(sp, "dTr =") == 0){
fscanf (paramFile, "%lf", ¶m.dTr);
fgets(sp, 3, paramFile);
}
//read doStoreFullK
else if(strcmp(sp, "doStoreFullK =") == 0){
fscanf (paramFile, "%d", ¶m.doStoreFullK);
fgets(sp, 3, paramFile);
}
//read pathK
else if(strcmp(sp, "pathToK =") == 0){
fscanf (paramFile, "%s", param.pathK);
fgets(sp, 3, paramFile);
if(strcmp(param.pathK, "doStoreSK") == 0){
param.pathK[0] = 0;
//fgets(skip, 3, paramFile);
fscanf (paramFile, "%d", ¶m.doStoreK);
fgets(sp, 3, paramFile);
}
}
//read doStoreK
else if(strcmp(sp, "doStoreSK =") == 0){
fscanf (paramFile, "%d", ¶m.doStoreK);
fgets(sp, 3, paramFile);
}
//read nbins
else if(strcmp(sp, "nbins =") == 0){
fscanf (paramFile, "%d", ¶m.nbins);
fgets(sp, 3, paramFile);
}
//read binsfile
else if(strcmp(sp, "binsFile =") == 0){
fscanf (paramFile, "%s", param.bins);
fgets(sp, 3, paramFile);
}
//read outputEdges
else if(strcmp(sp, "OutputEdgesFile =") == 0){
fscanf (paramFile, "%s", param.edges);
fgets(sp, 3, paramFile);
}
//read kmin
else if(strcmp(sp, "kmin =") == 0){
fscanf (paramFile, "%lf", ¶m.kmin);
fgets(sp, 3, paramFile);
}
//read qalphaL
else if(strcmp(sp, "qalphaL =") == 0){
fscanf (paramFile, "%lf", ¶m.qalphaL);
fgets(sp, 3, paramFile);
}
//read gammaF
else if(strcmp(sp, "gammaF =") == 0){
fscanf (paramFile, "%lf", ¶m.gammaF);
fgets(sp, 3, paramFile);
}
//read doMean
else if(strcmp(sp, "doMean =") == 0){
fscanf (paramFile, "%d", ¶m.doMean);
fgets(sp, 3, paramFile);
}
//read Units
else if(strcmp(sp, "Units =") == 0){
fscanf (paramFile, "%d", ¶m.units);
fgets(sp, 3, paramFile);
}
//read ReplaceFiles
else if(strcmp(sp, "ReplaceFiles =") == 0){
fscanf (paramFile, "%d", ¶m.replaceFiles);
fgets(sp, 3, paramFile);
}
//read RLOW
else if(strcmp(sp, "RLOW =") == 0){
//not used anymore
int t;
fscanf (paramFile, "%d", &t);
fgets(sp, 3, paramFile);
}
//read profile
else if(strcmp(sp, "profile =") == 0){
fscanf (paramFile, "%d", ¶m.profile);
fgets(sp, 3, paramFile);
}
//read doTuning
else if(strcmp(sp, "doTuning =") == 0){
fscanf (paramFile, "%d", ¶m.doTuning);
fgets(sp, 3, paramFile);
}
//read removePlinth
else if(strcmp(sp, "removePlinth =") == 0){
fscanf (paramFile, "%d", ¶m.removePlinth);
fgets(sp, 3, paramFile);
}
//read subLorentzianFile
else if(strcmp(sp, "subLorentzianfile =") == 0){
fscanf (paramFile, "%s", param.subLorentzianFilename);
fgets(sp, 3, paramFile);
}
else{
printf("Undefined line in param.dat file: line %d\n", j);
return 0;
}
}
fclose(paramFile);
//Read console input arguments
for(int i = 1; i < argc; i += 2){
if(strcmp(argv[i], "-name") == 0){
sprintf(param.name, "%s", argv[i + 1]);
}
else if(strcmp(argv[i], "-T") == 0){
param.T = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-P") == 0){
param.P = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-M") == 0){
sprintf(param.mParamFilename, "%s", argv[i + 1]);
}
else if(strcmp(argv[i], "-path") == 0){
sprintf(param.path, "%s", argv[i + 1]);
}
else if(strcmp(argv[i], "-pathK") == 0){
sprintf(param.pathK, "%s", argv[i + 1]);
}
else if(strcmp(argv[i], "-numin") == 0){
param.numin = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-numax") == 0){
param.numax = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-dnu") == 0){
param.dnu = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-cutM") == 0){
param.cutMode = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-cut") == 0){
param.cut = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-dR") == 0){
param.doResampling = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-nC") == 0){
param.nC = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-dT") == 0){
param.doTransmission = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-nTr") == 0){
param.nTr = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-dTr") == 0){
param.dTr = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-dSF") == 0){
param.doStoreFullK = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-dSS") == 0){
param.doStoreK = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-nbins") == 0){
param.nbins = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-kmin") == 0){
param.kmin = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-q") == 0){
param.qalphaL = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-gammaF") == 0){
param.gammaF = atof(argv[i + 1]);
}
else if(strcmp(argv[i], "-dev") == 0){
param.dev = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-Mean") == 0){
param.doMean = atoi(argv[i + 1]);
}
else if(strcmp(argv[i], "-tuning") == 0){
param.doTuning = atoi(argv[i + 1]);
}
else{
printf("Error: Console arguments not valid!\n");
return 0;
}
}
if(strcmp(param.bins, "-") != 0){
printf("Use bins in file %s\n", param.bins);
param.useIndividualBins = 1;
FILE *binsfile;
binsfile = fopen(param.bins, "r");
if(binsfile == NULL){
printf("Error: bins file not found: %s\n", param.bins);
return 0;
}
double b;
int er;
for(int i = 0; i < 1000000; ++i){
er = fscanf(binsfile, "%lf", &b);
if(er <= 0){
param.nbins = i - 1;
break;
}
if(i == 1000000 - 1){
printf("Error: too many lines in binsfile %s\n", param.bins);
return 0;
}
}
fclose(binsfile);
}
if(strcmp(param.edges, "-") != 0){
printf("Use output edges in file %s\n", param.edges);
param.useOutputEdges = 1;
FILE *edgesfile;
edgesfile = fopen(param.edges, "r");
if(edgesfile == NULL){
printf("Error: output edges file not found: %s\n", param.edges);
return 0;
}
double b;
int er;
for(int i = 0; i < 1000000; ++i){
er = fscanf(edgesfile, "%lf", &b);
if(er <= 0){
param.nedges = i;
break;
}
if(i == 1000000 - 1){
printf("Error: too many lines in edgesfile %s\n", param.edges);
return 0;
}
}
fclose(edgesfile);
}
if(strcmp(param.PFilename, "-") != 0){
printf("Use Pressure in file %s\n", param.PFilename);
param.usePFile = 1;
FILE *Pfile;
Pfile = fopen(param.PFilename, "r");
if(Pfile == NULL){
printf("Error: Pressure file not found: %s\n", param.PFilename);
return 0;
}
double b;
int er;
for(int i = 0; i < 1000000; ++i){
er = fscanf(Pfile, "%lf", &b);
if(er <= 0){
param.nP = i;
break;
}
if(i == 1000000 - 1){
printf("Error: too many lines in Pfile %s\n", param.PFilename);
return 0;
}
}
fclose(Pfile);
}
if(strcmp(param.SpeciesFilename, "-") != 0){
printf("Use Species in file %s\n", param.SpeciesFilename);
param.useSpeciesFile = 1;
FILE *Speciesfile;
Speciesfile = fopen(param.SpeciesFilename, "r");
if(Speciesfile == NULL){
printf("Error: Species file not found: %s\n", param.SpeciesFilename);
return 0;
}
char b[160];
double abundance;
int er;
for(int i = 0; i < 1000000; ++i){
er = fscanf(Speciesfile, "%s %lf", b, &abundance);
if(er <= 0){
param.nSpecies = i;
break;
}
if(i == 1000000 - 1){
printf("Error: too many lines in Speciesfile %s\n", param.SpeciesFilename);
return 0;
}
}
fclose(Speciesfile);
}
if(strcmp(param.subLorentzianFilename, "-") != 0){
printf("Use sub-Lorentzian file %s\n", param.subLorentzianFilename);
param.useSubLorentzian = 1;
FILE *sLfile;
sLfile = fopen(param.subLorentzianFilename, "r");
if(sLfile == NULL){
printf("Error: sub-Lorentzian file not found: %s\n", param.subLorentzianFilename);
return 0;
}
char b[160];
int er;
//Read Perrin and Hartmann 1989 coefficients
er = fscanf(sLfile, "%s %f", b, &sLchi_h[0]); //sigma1
er = fscanf(sLfile, "%s %f", b, &sLchi_h[1]); //sigma2
er = fscanf(sLfile, "%s %f", b, &sLchi_h[2]); //sigma3
er = fscanf(sLfile, "%s %s %s %s", b, b, b, b); //B alpha beta epsilon
er = fscanf(sLfile, "%s %f %f %f", b, &sLchi_h[3], &sLchi_h[4], &sLchi_h[5]); //B1
er = fscanf(sLfile, "%s %f %f %f", b, &sLchi_h[6], &sLchi_h[7], &sLchi_h[8]); //B2
er = fscanf(sLfile, "%s %f %f %f", b, &sLchi_h[9], &sLchi_h[10], &sLchi_h[11]); //B3
//read range
er = fscanf(sLfile, "%s %s %s", b, b, b); //range
er = fscanf(sLfile, "%f %f", &sLchi_h[12], &sLchi_h[13]); //B3
if(er <= 0){
printf("Error in sub-Lorentzian file read %s\n", param.subLorentzianFilename);
return 0;
}
fclose(sLfile);
}
if(strcmp(param.ciaSystem, "-") != 0){
param.useCia = 1;
}
return 1;
}
__host__ int readBinFile(Param ¶m, double *binBoundaries_h){
FILE *binsfile;
binsfile = fopen(param.bins, "r");
int er;
double binsOld = -100000.0;
for(int i = 0; i < param.nbins + 1; ++i){
er = fscanf(binsfile, "%lf", &binBoundaries_h[i]);
if(er <= 0) return 0;
if(binBoundaries_h[i] <= binsOld){
printf("Error; bin boundaries not monotonic growing\n");
return 0;
}
binsOld = binBoundaries_h[i];
//printf("%g\n", binBoundaries_h[i]);
}
fclose(binsfile);
return 1;
}
__host__ int readEdgesFile(Param ¶m, double *outputEdges_h){
FILE *edgesfile;
edgesfile = fopen(param.edges, "r");
int er;
double edgesOld = -100000.0;
for(int i = 0; i < param.nedges; ++i){
er = fscanf(edgesfile, "%lf", &outputEdges_h[i]);
if(er <= 0) return 0;
if(outputEdges_h[i] <= edgesOld){
printf("Error; output edges not monotonic growing\n");
return 0;
}
edgesOld = outputEdges_h[i];
//printf("%g\n", outputEdges_h[i]);
}
fclose(edgesfile);
return 1;
}
__host__ int readPFile(Param ¶m, double *P_h){
FILE *Pfile;
Pfile = fopen(param.PFilename, "r");
int er;
for(int i = 0; i < param.nP; ++i){
er = fscanf(Pfile, "%lf", &P_h[i]);
if(er <= 0) return 0;
}
fclose(Pfile);
return 1;
}
__host__ int readSpeciesFile(Param ¶m, char **SpeciesN_h, double *SpeciesA_h){
FILE *Speciesfile;
Speciesfile = fopen(param.SpeciesFilename, "r");
int er;
for(int i = 0; i < param.nSpecies; ++i){
er = fscanf(Speciesfile, "%s %lf", SpeciesN_h[i], &SpeciesA_h[i]);
printf("Species: %s %g\n", SpeciesN_h[i], SpeciesA_h[i]);
if(er <= 0) return 0;
}
fclose(Speciesfile);
return 1;
}
// ******************************************************************
//This Function reads the Hitran or Hitemp data files
//The gammaF factor scales the gamma term in the Lorentzian half width
//Author Simon Grimm
//January 2015
// *******************************************************************
__host__ int readFile(Param param, Molecule &m, Partition &part, Line &L, double qalphaL, int NL, FILE *dataFile, double Sscale, double meanMass){
double gammaAir, gammaSelf;
double mass;
//int id;
double S;
char cid[4];
for(int i = 0; i < NL; ++i){
//fread(&id, sizeof(int), 1, dataFile);
fread(&cid, 4*sizeof(char), 1, dataFile);
fread(&L.nu_h[i], sizeof(double), 1, dataFile);
fread(&S, sizeof(double), 1, dataFile);
fread(&L.EL_h[i], sizeof(double), 1, dataFile);
fread(&L.A_h[i], sizeof(double), 1, dataFile);
fread(&L.delta_h[i], sizeof(double), 1, dataFile);
fread(&gammaAir, sizeof(double), 1, dataFile);
fread(&gammaSelf, sizeof(double), 1, dataFile);
fread(&L.n_h[i], sizeof(double), 1, dataFile);
double Q = 0.0;
int Qcheck = 0;
double Sscale1 = Sscale;
double Abundance = 1.0;
//printf("%d |%s|\n", i, cid);
for(int j = 0; j < m.nISO; ++j){
//if(i < 10) printf("%d |%s|%s|\n", i, m.ISO[j].cid, cid);
//if(id == m.ISO[j].id){
if(strcmp(cid, m.ISO[j].cid) == 0){
mass = m.ISO[j].m / def_NA;
Abundance = m.ISO[j].Ab;
if(param.units == 0){
Abundance *= m.ISO[j].m / meanMass;
Sscale1 *= m.ISO[j].m / meanMass;
}
Q = part.Q[j];
Qcheck = 1;
}
}
if(Qcheck == 0){
printf("Error: partition function not found. %d |%s|%s| \n", i, cid, m.ISO[0].cid);
return 0;
}
L.vy_h[i] = (1.0 - qalphaL) * gammaAir + qalphaL * gammaSelf;
L.vy_h[i] *= param.gammaF;
L.ialphaD_h[i] = def_c * sqrt( mass / (2.0 * def_kB * param.T));
L.S_h[i] = S / Q * Abundance * Sscale1;
//if(i < 10) printf("%d %g %g %g %g %g %g\n", i, L.nu_h[i], L.S_h[i], L.ialphaD_h[i], L.EL_h[i], 0.0, Q);
}
return 1;
}
// ******************************************************************
//This Function reads the prepared Exomol files (use prepareExomol.cpp)
//The gammaF factor scales the gamma term in the Lorentzian half width
//Author Simon Grimm
//August 2016
// *******************************************************************
__host__ int readFileExomol(Line &L, int NL, FILE *dataFile, double *readBuffer_h, double *readBuffer_d, int readBufferSize, int readBufferN, int i, int vs, cudaStream_t *Stream){
int Size = min(readBufferSize, NL - i);
// use swap buffer
int bSwap = (vs % def_rBs) * readBufferN * readBufferSize;
cudaStreamSynchronize(Stream[vs % def_rBs]);
fread(readBuffer_h + bSwap, readBufferN * Size * sizeof(double), 1, dataFile);
//printf("read %d %d %d %g\n", i, readBufferN * Size, bSwap, readBuffer_h[0]);
//cudaMemcpy(readBuffer_d + i * readBufferN, readBuffer_h + bSwap, Size * readBufferN * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpyAsync(readBuffer_d + i * readBufferN, readBuffer_h + bSwap, Size * readBufferN * sizeof(double), cudaMemcpyHostToDevice, Stream[vs % def_rBs]);
return 1;
}
__host__ int readCiaFile(Param param, ciaSystem cia, double *x_h, double *K_h, int Nx, double T, double P){
FILE *ciaFile;
ciaFile = fopen(cia.dataFilename, "r");
if(ciaFile == NULL){
printf("Error: cia file is not available: %s\n", cia.dataFilename);
return 0;
}
char skip[160];
char c1[12];
char c2[12];
char c3[9];
char c4[9];
char c5[12];
int Ncia;
double Tcia0, Tcia1;
double nu0, nu1;
double cia0, cia1;
Tcia1 = 0.0;
for(int i = 0; i < Nx; ++i){
K_h[i] = 0.0;
}
for(int it = 0; it < cia.Nsets; ++it){
Tcia0 = Tcia1;
fgets(skip, 21, ciaFile);
fgets(c1, 11, ciaFile);
fgets(c2, 11, ciaFile);
fgets(c3, 8, ciaFile);
fgets(c4, 8, ciaFile);
fgets(c5, 11, ciaFile);
fgets(skip, 37, ciaFile);
Ncia = atoi(c3);
Tcia1 = strtod(c4, NULL);
double numax = strtod(c2, NULL);
//double max = strtod(c5, NULL);
//double numin = strtod(c1, NULL);
//printf("%g %g %d %g %g %g\n", numin, numax, Ncia, Tcia1, Tcia0, max);
fscanf(ciaFile, "%lf", &nu0);
fscanf(ciaFile, "%lf", &cia0);
fscanf(ciaFile, "%lf", &nu1);
fscanf(ciaFile, "%lf", &cia1);
int nc = 2;
for(int i = 0; i < Nx; ++i){
while(x_h[i] >= nu1){
nu0 = nu1;
cia0 = cia1;
fscanf(ciaFile, "%lf", &nu1);
fscanf(ciaFile, "%lf", &cia1);
//printf("C %g %g %d %d\n", nu1, cia1, i, nc);
++nc;
if(nc == Ncia) break;
}
if(nu0 <= x_h[i] && x_h[i] < nu1){
if(Tcia1 <= T){
K_h[i] = cia0 + (cia1 - cia0) * (x_h[i] - nu0) / (nu1 - nu0);
//if(Tcia1 == 400) printf("A %g %g %g %g %g %g %g\n", nu0, x_h[i], nu1, cia0, cia1, K_h[i], Tcia1);
}
if(T < Tcia1 && Tcia0 > 0.0){
double K0 = K_h[i];
double K1 = cia0 + (cia1 - cia0) * (x_h[i] - nu0) / (nu1 - nu0);
K_h[i] = K0 + (K1 - K0) * (T - Tcia0) / (Tcia1 - Tcia0);
//printf("B %g %g %g %g %g %g %g %g %g\n", nu0, x_h[i], nu1, cia0, cia1, K_h[i], T, K0, K1);
}
}
if(nu1 == numax) break;
if(i == Nx - 1){
while(nc < Ncia){
fscanf(ciaFile, "%lf", &nu1);
fscanf(ciaFile, "%lf", &cia1);
//printf("D %g %g %d %d\n", nu1, cia1, i, nc);
++nc;
}
}
}
fgets(skip, 3, ciaFile);
if(T <= Tcia1) break;
}
//See HITRAN cia Paper, Richard et al 2012
//P0 is set to 1 atm
//T0 is set to 273.15 K
double rho1 = P * 273.15 / T * def_amagat; // numerical density in molecules cm^-3
for(int i = 0; i < Nx; ++i){
if(Tcia1 < T){
K_h[i] = param.kmin;
}
else{
K_h[i] *= rho1; // K in cm^2 / molecule
K_h[i] *=def_NA / cia.mass1; //K in cm^2 / g //should be masss of he in h2he
K_h[i] += param.kmin;
}
}
fclose(ciaFile);
for(int i = 0; i < Nx; ++i){
//printf("%g %g %g\n", x_h[i], K_h[i], T);
}
return 1;
}
__host__ void Alloc_Line(Line &L, Molecule &m, Param param){
int n = min(def_maxlines, m.NLmax);
L.nu_h = (double*)malloc(n * sizeof(double));
L.S_h = (double*)malloc(n * sizeof(double));
L.A_h = (double*)malloc(n * sizeof(double));
L.delta_h = (double*)malloc(n * sizeof(double));
L.EL_h = (double*)malloc(n * sizeof(double));
L.vy_h = (double*)malloc(n * sizeof(double));
L.ialphaD_h = (double*)malloc(n * sizeof(double));
L.n_h = (double*)malloc(n * sizeof(double));
cudaHostAlloc((void **) &L.iiLimitsA0_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsA1_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAL0_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAL1_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAR0_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAR1_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsB0_h, (n + def_nlB - 1)/ def_nlB * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsB1_h, (n + def_nlB - 1)/ def_nlB * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsC0_h, (n + def_nlC - 1)/ def_nlC * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsC1_h, (n + def_nlC - 1)/ def_nlC * sizeof(long long int), cudaHostAllocDefault);
cudaMalloc((void **) &L.nu_d, n * sizeof(double));
cudaMalloc((void **) &L.S_d, n * sizeof(double));
cudaMalloc((void **) &L.Sf_d, n * sizeof(float));
cudaMalloc((void **) &L.S1_d, n * sizeof(double));
cudaMalloc((void **) &L.S1f_d, n * sizeof(float));
cudaMalloc((void **) &L.A_d, n * sizeof(double));
cudaMalloc((void **) &L.delta_d, n * sizeof(double));
cudaMalloc((void **) &L.EL_d, n * sizeof(double));
cudaMalloc((void **) &L.vy_d, n * sizeof(double));
cudaMalloc((void **) &L.vyf_d, n * sizeof(float));
cudaMalloc((void **) &L.va_d, n * sizeof(float));
cudaMalloc((void **) &L.vb_d, n * sizeof(float));
cudaMalloc((void **) &L.vcut2_d, n * sizeof(float));
cudaMalloc((void **) &L.ialphaD_d, n * sizeof(double));
cudaMalloc((void **) &L.n_d, n * sizeof(double));
cudaMalloc((void **) &L.Sort_d, n * sizeof(double));
cudaMalloc((void **) &L.ID_d, n * sizeof(int));
if(param.removePlinth == 1){
cudaMalloc((void **) &L.plinth_d, n * sizeof(double));
}
else{
L.plinth_d = NULL;
}
cudaMalloc((void **) &L.nuLimitsA0_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsA1_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAL0_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAL1_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAR0_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAR1_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsB0_d, (n + def_nlB - 1)/ def_nlB * sizeof(double));
cudaMalloc((void **) &L.nuLimitsB1_d, (n + def_nlB - 1)/ def_nlB * sizeof(double));
cudaMalloc((void **) &L.nuLimitsC0_d, (n + def_nlC - 1)/ def_nlC * sizeof(double));
cudaMalloc((void **) &L.nuLimitsC1_d, (n + def_nlC - 1)/ def_nlC * sizeof(double));
cudaMalloc((void **) &L.iiLimitsA0_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsA1_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAL0_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAL1_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAR0_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAR1_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsB0_d, (n + def_nlB - 1)/ def_nlB * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsB1_d, (n + def_nlB - 1)/ def_nlB * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsC0_d, (n + def_nlC - 1)/ def_nlC * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsC1_d, (n + def_nlC - 1)/ def_nlC * sizeof(long long int));
//mapped memory
cudaHostAlloc((void **) &L.iiLimitsAT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsALT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsART_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsBT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsCT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostGetDevicePointer((void **)&L.iiLimitsAT_d, (void *)L.iiLimitsAT_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsALT_d, (void *)L.iiLimitsALT_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsART_d, (void *)L.iiLimitsART_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsBT_d, (void *)L.iiLimitsBT_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsCT_d, (void *)L.iiLimitsCT_m, 0);
}
__host__ void Alloc2_Line(Line &L, Molecule &m, Param param){
int n = min(def_maxlines, m.NLmax);
cudaHostAlloc((void **) &L.nu_h, n * sizeof(double), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.S_h, n * sizeof(double), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.A_h, n * sizeof(double), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.EL_h, n * sizeof(double), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsA0_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsA1_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAL0_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAL1_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAR0_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsAR1_h, (n + def_nlA - 1)/ def_nlA * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsB0_h, (n + def_nlB - 1)/ def_nlB * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsB1_h, (n + def_nlB - 1)/ def_nlB * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsC0_h, (n + def_nlC - 1)/ def_nlC * sizeof(long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsC1_h, (n + def_nlC - 1)/ def_nlC * sizeof(long long int), cudaHostAllocDefault);
cudaMalloc((void **) &L.nu_d, n * sizeof(double));
cudaMalloc((void **) &L.S_d, n * sizeof(double));
cudaMalloc((void **) &L.Sf_d, n * sizeof(float));
cudaMalloc((void **) &L.S1_d, n * sizeof(double));
cudaMalloc((void **) &L.S1f_d, n * sizeof(float));
cudaMalloc((void **) &L.A_d, n * sizeof(double));
cudaMalloc((void **) &L.EL_d, n * sizeof(double));
cudaMalloc((void **) &L.vy_d, n * sizeof(double));
cudaMalloc((void **) &L.vyf_d, n * sizeof(float));
cudaMalloc((void **) &L.va_d, n * sizeof(float));
cudaMalloc((void **) &L.vb_d, n * sizeof(float));
cudaMalloc((void **) &L.vcut2_d, n * sizeof(float));
cudaMalloc((void **) &L.ialphaD_d, n * sizeof(double));
cudaMalloc((void **) &L.n_d, n * sizeof(double));
cudaMalloc((void **) &L.Sort_d, n * sizeof(double));
cudaMalloc((void **) &L.ID_d, n * sizeof(int));
if(param.removePlinth == 1){
cudaMalloc((void **) &L.plinth_d, n * sizeof(double));
}
else{
L.plinth_d = NULL;
}
cudaMalloc((void **) &L.nuLimitsA0_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsA1_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAL0_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAL1_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAR0_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsAR1_d, (n + def_nlA - 1)/ def_nlA * sizeof(double));
cudaMalloc((void **) &L.nuLimitsB0_d, (n + def_nlB - 1)/ def_nlB * sizeof(double));
cudaMalloc((void **) &L.nuLimitsB1_d, (n + def_nlB - 1)/ def_nlB * sizeof(double));
cudaMalloc((void **) &L.nuLimitsC0_d, (n + def_nlC - 1)/ def_nlC * sizeof(double));
cudaMalloc((void **) &L.nuLimitsC1_d, (n + def_nlC - 1)/ def_nlC * sizeof(double));
cudaMalloc((void **) &L.iiLimitsA0_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsA1_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAL0_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAL1_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAR0_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsAR1_d, (n + def_nlA - 1)/ def_nlA * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsB0_d, (n + def_nlB - 1)/ def_nlB * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsB1_d, (n + def_nlB - 1)/ def_nlB * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsC0_d, (n + def_nlC - 1)/ def_nlC * sizeof(long long int));
cudaMalloc((void **) &L.iiLimitsC1_d, (n + def_nlC - 1)/ def_nlC * sizeof(long long int));
//mapped memory
cudaHostAlloc((void **) &L.iiLimitsAT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsALT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsART_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsBT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostAlloc((void **) &L.iiLimitsCT_m, 2 * sizeof(unsigned long long int), cudaHostAllocDefault);
cudaHostGetDevicePointer((void **)&L.iiLimitsAT_d, (void *)L.iiLimitsAT_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsALT_d, (void *)L.iiLimitsALT_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsART_d, (void *)L.iiLimitsART_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsBT_d, (void *)L.iiLimitsBT_m, 0);
cudaHostGetDevicePointer((void **)&L.iiLimitsCT_d, (void *)L.iiLimitsCT_m, 0);
}
__host__ void Copy_Line(Line &L, Molecule &m, int NL){
cudaMemcpy(L.nu_d, L.nu_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.S_d, L.S_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.vy_d, L.vy_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.A_d, L.A_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.delta_d, L.delta_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.EL_d, L.EL_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.ialphaD_d, L.ialphaD_h, NL * sizeof(double), cudaMemcpyHostToDevice);
cudaMemcpy(L.n_d, L.n_h, NL * sizeof(double), cudaMemcpyHostToDevice);
}
__host__ void free_Line(Line &L, Param param){
free(L.nu_h);
free(L.S_h);
free(L.A_h);
free(L.delta_h);
free(L.EL_h);
free(L.vy_h);
free(L.ialphaD_h);
free(L.n_h);
cudaFreeHost(L.iiLimitsA0_h);
cudaFreeHost(L.iiLimitsA1_h);
cudaFreeHost(L.iiLimitsAL0_h);
cudaFreeHost(L.iiLimitsAL1_h);
cudaFreeHost(L.iiLimitsAR0_h);
cudaFreeHost(L.iiLimitsAR1_h);
cudaFreeHost(L.iiLimitsB0_h);
cudaFreeHost(L.iiLimitsB1_h);
cudaFreeHost(L.iiLimitsC0_h);
cudaFreeHost(L.iiLimitsC1_h);
cudaFree(L.nu_d);
cudaFree(L.S_d);
cudaFree(L.Sf_d);
cudaFree(L.S1_d);
cudaFree(L.S1f_d);
cudaFree(L.A_d);
cudaFree(L.delta_d);
cudaFree(L.EL_d);
cudaFree(L.vy_d);