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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(biocbox,FacileDgeAnalysisResult)
S3method(biocbox,FacileLinearModelDefinition)
S3method(compare,FacileAnalysisResult)
S3method(compare,FacilePcaAnalysisResult)
S3method(compare,FacileTtestAnalysisResult)
S3method(contrast,"NULL")
S3method(contrast,FacileDgeAnalysisResult)
S3method(contrast,FacileLinearModelDefinition)
S3method(contrast,default)
S3method(default_ffsea_args,FacileAnovaAnalysisResult)
S3method(default_ffsea_args,FacilePcaAnalysisResult)
S3method(default_ffsea_args,FacileTtestAnalysisResult)
S3method(default_ffsea_args,default)
S3method(design,"NULL")
S3method(design,FacileDgeAnalysisResult)
S3method(design,FacileLinearModelDefinition)
S3method(faro,FacileAnalysisResult)
S3method(faro,default)
S3method(fdge,FacileAnovaModelDefinition)
S3method(fdge,FacileFailedModelDefinition)
S3method(fdge,FacileLinearModelDefinition)
S3method(fdge,FacileTtestDGEModelDefinition)
S3method(fds,FacileAnalysisResult)
S3method(features,FacileDgeAnalysisResult)
S3method(features,FacileFseaAnalysisResult)
S3method(features,FacilePcaAnalysisResult)
S3method(ffsea,FacileAnovaAnalysisResult)
S3method(ffsea,FacilePcaAnalysisResult)
S3method(ffsea,FacileTtestAnalysisResult)
S3method(ffsea,FacileTtestComparisonAnalysisResult)
S3method(ffsea,data.frame)
S3method(ffsea_method_types,FacileAnovaAnalysisResult)
S3method(ffsea_method_types,FacilePcaAnalysisResult)
S3method(ffsea_method_types,FacileTtestAnalysisResult)
S3method(ffsea_method_types,default)
S3method(ffsea_methods,FacileAnalysisResult)
S3method(ffsea_methods,default)
S3method(flm_def,FacileDataStore)
S3method(flm_def,data.frame)
S3method(flm_def,facile_frame)
S3method(flm_def,tbl)
S3method(format,FacileFeatureRankings)
S3method(format,FacileFeatureSignature)
S3method(format,FacileFseaAnalysisResult)
S3method(format,FacileLinearModelDefinition)
S3method(format,FacilePcaAnalysisResult)
S3method(format,FacileTtestComparisonAnalysisResult)
S3method(formula,FacileLinearModelDefinition)
S3method(fpca,FacileDataStore)
S3method(fpca,facile_frame)
S3method(fsave,FacileAnalysisResult)
S3method(fsave,FacileDgeAnalysisResult)
S3method(is_anova,default)
S3method(is_ttest,default)
S3method(label,FacileAnovaAnalysisResult)
S3method(label,FacileTtestAnalysisResult)
S3method(model,"NULL")
S3method(model,FacileDgeAnalysisResult)
S3method(model,FacileTtestComparisonAnalysisResult)
S3method(name,FacileAnovaAnalysisResult)
S3method(name,FacileTtestAnalysisResult)
S3method(organism,FacileAnalysisResult)
S3method(param,BiocBox)
S3method(param,FacileAnalysisResult)
S3method(print,FacileDgeAnalysisResult)
S3method(print,FacileFeatureRankings)
S3method(print,FacileFeatureSignature)
S3method(print,FacileFseaAnalysisResult)
S3method(print,FacileLinearModelDefinition)
S3method(print,FacilePcaAnalysisResult)
S3method(print,FacileTtestComparisonAnalysisResult)
S3method(ranks,FacileAnovaAnalysisResult)
S3method(ranks,FacileFseaAnalysisResult)
S3method(ranks,FacilePcaAnalysisResult)
S3method(ranks,FacileTtestAnalysisResult)
S3method(redo,FacileLinearModelDefinition)
S3method(refds,FacileAnalysisResult)
S3method(refds,default)
S3method(refds,facile_frame)
S3method(refds,list)
S3method(report,FacilePcaAnalysisResult)
S3method(report,FacileTtestAnalysisResult)
S3method(result,FacileAnalysisResult)
S3method(result,FacileDgeAnalysisResult)
S3method(result,FacileFeatureRanks)
S3method(result,FacileFeatureSetRanks)
S3method(result,FacileFeatureSignature)
S3method(result,FacileFseaAnalysisResult)
S3method(result,FacileLinearModelDefinition)
S3method(result,FacileTtestComparisonAnalysisResult)
S3method(samples,FacileDgeAnalysisResult)
S3method(samples,FacileFseaAnalysisResult)
S3method(samples,FacileLinearModelDefinition)
S3method(samples,FacilePcaAnalysisResult)
S3method(samples,FacileTtestComparisonAnalysisResult)
S3method(samples,FacileTtestModelDefinition)
S3method(signature,FacileAnovaAnalysisResult)
S3method(signature,FacileAnovaFeatureRanks)
S3method(signature,FacilePcaAnalysisResult)
S3method(signature,FacilePcaFeatureRanks)
S3method(signature,FacileTtestAnalysisResult)
S3method(signature,FacileTtestFeatureRanks)
S3method(signed,FacileFeatureRanks)
S3method(signed,FacileFeatureSignature)
S3method(status,FacileAnovaModelDefinition)
S3method(status,FacileFailedModelDefinition)
S3method(status,FacileInteractionTestModelDefinition)
S3method(status,FacileTtestModelDefinition)
S3method(status,default)
S3method(tidy,FacileAnalysisResult)
S3method(tidy,FacileDgeAnalysisResult)
S3method(tidy,FacileFeatureRanks)
S3method(tidy,FacileFeatureSetRanks)
S3method(tidy,FacileFeatureSignature)
S3method(tidy,FacileFseaAnalysisResult)
S3method(tidy,FacilePcaComparisonAnalysisResult)
S3method(tidy,FacileTtestComparisonAnalysisResult)
S3method(unfds,FacileAnalysisResult)
S3method(unfds,data.frame)
S3method(unfds,default)
S3method(unfds,list)
S3method(unfds,tbl)
S3method(viz,FacileAnovaAnalysisResult)
S3method(viz,FacileFseaAnalysisResult)
S3method(viz,FacilePcaAnalysisResult)
S3method(viz,FacileTtestAnalysisResult)
S3method(viz,FacileTtestComparisonAnalysisResult)
export(GeneSetDb.FacileFeatureSignature)
export(comparable)
export(compare)
export(contrast)
export(default_ffsea_args)
export(design)
export(errors)
export(faro)
export(fdge)
export(fdge_methods)
export(features)
export(ffsea)
export(ffsea_method_types)
export(ffsea_methods)
export(flm_def)
export(fload)
export(fpca)
export(fsave)
export(is_anova)
export(is_ttest)
export(messages)
export(model)
export(param)
export(plot_data)
export(ranks)
export(redo)
export(refds)
export(report)
export(result)
export(samples)
export(signature)
export(signed)
export(status)
export(tidy)
export(unfds)
export(viz)
export(warnings)
export(with_sample_covs)
import(FacileData)
import(checkmate)
import(dplyr)
import(tidyr)
importFrom(DT,datatable)
importFrom(DT,formatRound)
importFrom(FacileData,features)
importFrom(FacileData,samples)
importFrom(FacileViz,plot)
importFrom(FacileViz,plot_data)
importFrom(FacileViz,unselected)
importFrom(broom,tidy)
importFrom(crosstalk,SharedData)
importFrom(crosstalk,bscols)
importFrom(glue,glue)
importFrom(htmltools,browsable)
importFrom(htmltools,tagList)
importFrom(htmltools,tags)
importFrom(irlba,prcomp_irlba)
importFrom(limma,duplicateCorrelation)
importFrom(limma,voom)
importFrom(limma,voomWithQualityWeights)
importFrom(matrixStats,rowVars)
importFrom(plotly,config)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,toWebGL)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(sparrow,failWith)
importFrom(stats,formula)
importFrom(stats,model.matrix)
importFrom(stringr,str_detect)
importFrom(stringr,str_split)