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fetch_assay_data(facilitated, ...) is fishy #3

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lianos opened this issue Apr 16, 2020 · 0 comments

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lianos commented Apr 16, 2020

The FacileBiocData-inspired FacileAnalysis vignette is doing something very weird here:

dat.bc <- fdds %>% 
  fetch_assay_data(features = head(vm.res, 1),
                   normalized = TRUE,
                   batch = "cell") %>% 
  with_sample_covariates("treatment") %>% 
  mutate(type = "batch_corrected")

If we debug(FacileData::as_facile_frame, you'll be caught in an infinite loop of of as_facile_frame calls ...

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