DESCRIPTION

Package: FacileData
Type: Package
Title: A fluent API for accessing multi-assay high-throughput genomics data
Version: 0.98.103
Authors@R: c(
    person("Steve", "Lianoglou", , "slianoglou@gmail.com", c("aut", "cre"),
      comment = c(ORCID = "0000-0002-0924-1754")),
  person("Vincent", "Rouilly", , "rouilly.vincent@gene.com", role = "aut"),
  person("Peter", "Haverty", , comment = "@phaverty on github", role = "aut"),
  person("Jonathan", "Carroll", , "rpkg@jcarroll.com.au", role = "ctb"),
  person("Denali Therapeutics", role = c("cph", "fnd"),
         comment = "Coypright 2019"),
  person("Genentech", role = c("cph", "fnd"),
         comment = "Coypright 2016 - 2018"))
Description: Defines the "FacileData" API over multi-assay, high-throughput
  genomics data. The FacileData API is a fluent tidy-like grammar that
  facilitates exploratory data analysis. This package also defines a
  "FacileDataSet" class, which is a reference implementation of the "FacileData"
  API that uses SQLite and HDF5 files to store arbitrarily large datasets and
  provide fast and efficient access to arbitrary subsets of these data without
  loading it all into memory.
License: Apache License (>= 2.0)
URL: https://github.com/facilebio/FacileData
BugReports: https://github.com/facilebio/FacileData/issues
Depends:
  R (>= 4.2.0),
Imports:
  broom,
  checkmate (>= 1.8.5),
  crayon,
  DBI,
  data.table,
  dbplyr (>= 1.4.0),
  dplyr (>= 1.1.1),
  glue,
  edgeR,
  jsonlite,
  lazyeval,
  lifecycle,
  limma,
  methods,
  sparrow,
  reshape2,
  rhdf5,
  rlang,
  RSQLite,
  qs,
  survival,
  utils,
  yaml
Suggests:
  airway,
  Biobase,
  knitr,
  parathyroidSE,
  rmarkdown,
  roxygen2 (>= 6.1.0),
  scuttle,
  Seurat,
  SingleCellExperiment,
  stringr,
  S4Vectors,
  SummarizedExperiment,
  testthat (>= 1.0.2),
  tidyr
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Encoding: UTF-8