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Gene names with dashes that end up in data columns for scatterplot b0rk it, eg. like the following data
fds <- exampleFacileDataSet() dat <- samples(fds) %>% with_assay_data("1") %>% with_assay_data("503538")
dat will look like so:
dat
# A tibble: 6 x 4 dataset sample_id A1BG `A1BG-AS1` <chr> <chr> <dbl> <dbl> 1 BLCA TCGA-BL-A0C8-01A-11R-A10U-07 -0.154 -2.65 2 BLCA TCGA-BL-A13I-01A-11R-A13Y-07 2.74 -1.89 3 BLCA TCGA-BL-A13J-01A-11R-A10U-07 0.726 -2.05 4 BLCA TCGA-BL-A3JM-01A-12R-A21D-07 0.171 -2.16 5 BLCA TCGA-BT-A0S7-01A-11R-A10U-07 2.38 -2.29 6 BLCA TCGA-BT-A0YX-01A-11R-A10U-07 0.152 -2.37
But fscatterplot(dat, c("A1BG", "A1BG-AS1")) errors out
fscatterplot(dat, c("A1BG", "A1BG-AS1"))
The text was updated successfully, but these errors were encountered:
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Gene names with dashes that end up in data columns for scatterplot b0rk it, eg. like the following data
dat
will look like so:But
fscatterplot(dat, c("A1BG", "A1BG-AS1"))
errors outThe text was updated successfully, but these errors were encountered: