pak::pkg_install seems to be choking?

facilebio · Sep 17, 2024 · 00a392b · 00a392b
1 parent a411de3
commit 00a392b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/facilebio_base/base-packages-install.R b/facilebio_base/base-packages-install.R
@@ -2,6 +2,6 @@ installed.pkgs <- rownames(installed.packages())
 required.pkgs <- readLines("/tmp/base-packages.txt")
 install.me <- setdiff(required.pkgs, installed.pkgs)
 
-# BiocManager::install(install.me, update = FALSE, ask = FALSE)
-pak::pkg_install(install.me, upgrade = TRUE, ask = FALSE)
+# pak::pkg_install(install.me, upgrade = TRUE, ask = FALSE)
+BiocManager::install(install.me, update = FALSE, ask = FALSE)