Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Parameter Scan: Nested repeated tasks? #8

Open
luciansmith opened this issue Apr 27, 2021 · 2 comments
Open

Parameter Scan: Nested repeated tasks? #8

luciansmith opened this issue Apr 27, 2021 · 2 comments

Comments

@luciansmith
Copy link

My impression of the attached Copasi file is that it is running a 2D parameter scan, where you vary one parameter over a certain dimension, and at every step in that process, you also vary another parameter over its whole range. In SED-ML, presumably this would come out as nested repeated tasks.

However, instead, the SED-ML that's produced simply produces a single repeated task with two ranges of unequal lengths. If I'm understanding things correctly, this needs to be fixed.
ARPP-16_Layer1_mutualInhibitions.zip

@fbergmann
Copy link
Owner

this has already been reported by the biomodels team, and a fix has been committed to git, next COPASI version will do it. I dont think there is a special thing that the scripts here could do to remedy that.

@fbergmann
Copy link
Owner

reading the issue in the other project, i see what you are after. The issue reported was just addressing writing out multiple ranges. but what you would rather have multiple repeatedTasks defined. i dont think this is something that scripts could handle here, so would have to be changed in COPASI itself.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants