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docx_cdx

Read ChemDraw CDX and other formats embedded in DOCX files

Don't use this CDX parser, it's unreliable. I have reimplemented it for fun, this is a 'note to self' repo. Launch obabel -i cdx 'file.cdx' -o sdf instead, for the time being CDX functionality does not work with Python bindings, only binary obabel does the job.

Requirements:

  • Python 3
  • kaitaistruct 0.8
  • olefile 0.45
  • openbabel 2.3

See setup.sh for install commands.

Example:

from docx_cdx.parse_mols_from_docx import read_mols_from_docx
mols = read_mols_from_docx('/home/user/file.docx')

for mol in mols:
    # will print MDL MOL strings of all the molecules in the docx file
    print(mol)