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fsl-centos7.def
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fsl-centos7.def
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Bootstrap: docker
From: centos:7.5.1804
%labels
Original Developer: Tashrif Billah <[email protected]>
Original Organization: PNL-BWH-HMS
Version 2 Developer: Kristen Finch <[email protected]>
Vresion 2 Organization: Univeristy of Washington HYAK
%help
Singularity recipe for FSL and FSLeyes
%post
# set up user and working directory
cd /
# libraries and commands for FSL
yum -y update
# git added to install list KF
yum -y install epel-release wget file bzip2 openblas-devel which libmng libpng12 libSM gtk2 mesa-dri-drivers git
# install FSL with ca.certificates fix from github
git clone https://github.com/finchnSNPs/hyak-fsl.git
python hyak-fsl/fslinstaller.py -d `pwd`/fsl-centos7
# install FSL from FSL wiki
# wget https://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py -O fslinstaller.py
# python fslinstaller.py -d `pwd`/fsl-centos7
# setup FSL environment
export FSLDIR=/fsl-centos7
# export PATH=$FSLDIR/bin/:$PATH
# source $FSLDIR/etc/fslconf/fsl.sh
%environment
export FSLDIR=/fsl-centos7
export PATH=$FSLDIR/bin/:$PATH
source $FSLDIR/etc/fslconf/fsl.sh