Code

Basis refactor pr1#273

Code

Merged

BalzaniEdoardo merged 114 commits intodevelopmentflatironinstitute/nemos:developmentfrom basis_refactor_pr1flatironinstitute/nemos:basis_refactor_pr1Copy head branch name to clipboardDec 11, 2024

+7,179-8,568

Commits

Commits on Nov 14, 2024

• initial moving pieces

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  1e2932a

• setup raised cosine

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  145ac9b

Commits on Nov 18, 2024

• mreged sphinx

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• fixed docs class orth exp

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• documentation fix

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• evaluate on grid orth exp

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• compute features orth exp

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• split by orth exp

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Commits on Nov 25, 2024

• merging sphinx

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• added changes

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• updated basis old

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• fixed _basis.py docstrings

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• fix minor changes

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• added back feature matrix

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• updated mixin description

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• fixed docstrings orthexp

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• updated raised cos

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• fixed spline docstrings

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• moving stuff around

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• start editing docstrings

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• improved tests

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• improved tests

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• improved tests

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Commits on Nov 26, 2024

• fixed eval changed testing

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• added some basic testing

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• linted

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• removed basis old

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• fixed first test

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• fixed second test

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• fixed test_set_width

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• fixed test_compute_features_axis

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• fixed test_compute_features_conv_input

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• fixed test_compute_features_returns_expected_number_of_basis

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• fixed test_number_of_required_inputs_compute_features

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• fixed test_evaluate_on_grid_meshgrid_size

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• fixed test_evaluate_on_grid_input_number

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• fixed test_time_scaling_values

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• fixed some test calls

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  38b499b

• moved to self.cls

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• refactored a bunch of raised cos tests

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• finished test raised cos log

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• test jointly shared methods

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• refactored all 1d basis

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Commits on Nov 27, 2024

• fixed additive basis tests

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• fixed multiplicative basis tests

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• fixed test splitters

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• linted tests

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• fixed some tests on docstrings

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• fixed tests that assumed 1d

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• fixed all basis tests and linted

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• fixed all basis tests and linted

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  839db69

• fixed other tests relying on basis

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• linted

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• fix basis naming

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  17e7d06

• fixed bug

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  17a9b93

• Merge branch 'sphinx' into basis_refactor_pr1

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  25f0814

• fix double plotting

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Commits on Nov 28, 2024

• move transformer basis out

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• added to api refs

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• fix auto-imports

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• fix ome links

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  7fd2ef7

• simplified inheritance

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  6b7486a

• fixed other links and added SplineBasis

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  0ed9040

• fixed all relative links

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  7f927ff

• ignore timeouts

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  92c0757

• uniform caps

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  9217087

• fix text

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Commits on Nov 29, 2024

• fix doctests

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  db72fda

• linted

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• fix test pipeline

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  462670b

• fix warns

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Commits on Dec 2, 2024

• generalized tests

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• added class lev docstrings for splines

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• added class lev docstrings for orth exp

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Commits on Dec 3, 2024

• fix all docstrings

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  38c4138

• removed unnecessary kwargs

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• removed unnecessary kwargs

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• pydocstyle

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• linted

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• fixed naming

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• moved docstrings from init

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• removed attrs from class docstrings

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• removed args from docstrings

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• Update typing.py

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• fixed tests and renamed funcs

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• fixed warns

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Commits on Dec 4, 2024

• Merge branch 'basis_refactor_pr1' of github.com:flatironinstitute/nemos into basis_refactor_pr1

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  f8d64ea

• fix tutorials

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• fix all tutorials

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  892c412

• fixed links htmlproofer

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• linted

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• updated jax link

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Commits on Dec 9, 2024

• Update docs/api_reference.rst

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• Update docs/background/plot_01_1D_basis_function.md

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• Update docs/developers_notes/04-basis_module.md

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• Update docs/background/plot_01_1D_basis_function.md

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• Update docs/background/plot_03_1D_convolution.md

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• Update docs/developers_notes/04-basis_module.md

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• Update docs/developers_notes/04-basis_module.md

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• Update docs/developers_notes/04-basis_module.md

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  59abe28

• Update src/nemos/basis/_basis_mixin.py

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  f376bd6

• Update src/nemos/basis/_basis_mixin.py

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  1aba9a5

• Update src/nemos/basis/_basis_mixin.py

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• Update src/nemos/basis/_transformer_basis.py

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• edits to docstrings

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  2b05994

• Update src/nemos/basis/_basis_mixin.py

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  98c2a74

• fixed inheritance and removed TransformerMixin init call

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• linted

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• merged conflicts

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• linted

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• fix tests

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• fix tests

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Commits on Dec 10, 2024

• fixed links

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• updates some docstrings

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