Introduction to Neurosift, NWB Developer Hackathon

Introduction to Neurosift

Jeremy Magland, Jeff Soules, Cody Baker, Ben Dichter

NWB Developer Hackathon, DataJoint Headquarters, April 2024

DANDI Browser

https://neurosift.app/?p=/dandi

Dandiset Browser

https://neurosift.app/?p=/dandiset&dandisetId=000409&dandisetVersion=draft

Advanced DANDI Query

https://neurosift.app/?p=/dandi-query

DANDI Archive Integration

https://dandiarchive.org/dandiset/000409/draft/files?location=sub-CSHL045&page=1

NWB File View

https://neurosift.app/?p=/nwb&dandisetId=000409&dandisetVersion=draft&url=https://api.dandiarchive.org/api/assets/c04f6b30-82bf-40e1-9210-34f0bcd8be24/download/

Raw View

Specifications View

Annotations (experimental)

Peri-stimulus Time Histogram

https://neurosift.app/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/f76/b9f/f76b9f7e-38ed-43fb-8fd0-4cc272fcd8bd&dandisetId=000409&dandisetVersion=draft&tab=view:PSTH%7C/intervals/trials&tab-time=undefined,undefined,undefined

BehavioralEvents

https://neurosift.app/?p=/nwb&dandisetId=000115&dandisetVersion=0.210914.1732&url=https://api.dandiarchive.org/api/assets/6df57370-9de8-4514-82f3-65d0f0528cde/download/&tab=neurodata-item:/processing/behavior/behavioral_events|BehavioralEvents

Spike Raster Plot

https://neurosift.app/?p=/nwb&dandisetId=000946&dandisetVersion=draft&url=https://api.dandiarchive.org/api/assets/3764f5c5-0d06-4f24-9bf2-d2849b1e9d0c/download/&tab=view:DirectRasterPlot|/units

DynamicTable

https://neurosift.app/?p=/nwb&url=https://api.dandiarchive.org/api/assets/58703c97-c0a9-4736-b684-73c85c1a444a/download/&dandisetId=000021&dandisetVersion=draft&tab=neurodata-item:/intervals/drifting_gratings_presentations|TimeIntervals

ElectricalSeries

https://neurosift.app/?p=/nwb&dandisetId=000409&dandisetVersion=draft&url=https://api.dandiarchive.org/api/assets/c04f6b30-82bf-40e1-9210-34f0bcd8be24/download/&tab=neurodata-item:/acquisition/ElectricalSeriesAp|ElectricalSeries

ImageSegmentation

https://neurosift.app/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/368/fa7/368fa71e-4c93-4f7e-af15-06776ca07f34&tab=neurodata-item:/processing/ophys/ImageSegmentation|ImageSegmentation

Synchronized Views

https://neurosift.app/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/ce3/8ff/ce38ff33-019b-4d8c-ad0b-cadbb4c227a9&dandisetId=000582&dandisetVersion=draft&tab=neurodata-items:view:X/Y%7C/processing/behavior/Position/SpatialSeriesLED1@neurodata-item:/processing/behavior/Position/SpatialSeriesLED1%7CSpatialSeries@view:DirectRasterPlot%7C/units@neurodata-item:/acquisition/ElectricalSeries%7CElectricalSeries

Other Views

Dendro Integration - supplemental NWB files with derived objects

https://neurosift.app/?p=/nwb&dandisetId=213569&dandisetVersion=draft&staging=1&url=https://api-staging.dandiarchive.org/api/assets/9b372ad4-a3f8-4d95-bda7-dc56637c8873/download/&st=lindi&tab=view:Autocorrelograms|/units

Please star us on GitHub!

https://github.com/flatironinstitute/neurosift