Neurosift DANDI Examples
ImageSegmentation
GH Issue: https://github.com/flatironinstitute/neurosift/issues/21
SpatialSeries
TwoPhotonSeries
GH Issue: https://github.com/flatironinstitute/neurosift/issues/73
TimeSeries
TimeIntervals
PSTH
https://dandiarchive.org/dandiset/000128/0.220113.0400/files?location=sub-Jenkins
See: https://github.com/flatironinstitute/neurosift/issues/93
Here's the one Cody uses as a reference: https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/14a/556/14a55630-cce3-4318-913a-d6d637ac9f4b&tab=view:PSTH%7C/intervals/trials
Here's another interesting example where the neural responses to wheel movements are very significant
ElectricalSeries
LabeledEvents
Here's one with synchronized views
ImageSeries
GH Issue: https://github.com/flatironinstitute/neurosift/issues/60
RasterPlot
Autocorrelograms
Images
BehavioralEvents
Gillespie et al (2021) Many series, 2 categories (0, 1) Rbeam, Rlight, Rpump, Wbeam, Wlight, Wpump, arm1beam, ...
Example of true/false response:
timestamp_lick and timestamp_reward - only one category "1". You can see the licking after each reward.
Many series (14) - one category "1" delay_start_times, delay_stop_times, go_start_times, go_stop_times, left_lick_times, photostim_start_times, presample_start_times, ...
Browse NWB File
DANDISET: 000003 0.230629.1955
sub-YutaMouse33/sub-YutaMouse33_ses-YutaMouse33-150222_behavior+ecephys.nwb
Physiological Properties and Behavioral Correlates of Hippocampal Granule Cells and Mossy Cells
ElectricalSeries, TimeSeries, SpatialSeries, TimeIntervals, LFP, DecompositionSeries, 68 Units
DANDISET: 000458 0.230317.0039
sub-569068/sub-569068_ses-20210304_behavior+ecephys.nwb
Simultaneous electroencephalography, extracellular electrophysiology, and cortical electrical stimulation in head-fixed mice
EEG, LFP, running speed, 338 Units, 2.5 hr
DANDISET: 000582 draft
sub-10073/sub-10073_ses-17010302_behavior.nwb
Conjunctive Representation of Position, Direction, and Velocity in Entorhinal Cortex
Position/SpatialSeriesLED1, 8 Units (small raster plot), 10 min
DANDISET: 000238 0.230316.1519
sub-RSpinal-Random-Wave-01/sub-RSpinal-Random-Wave-01_ses-20210724T194543_behavior+ophys.nwb
Thermoregulatory Responses Reticulospinal system
50 TwoPhotonSeries, 50 RoiResponseSeries, 1 ImageSegmentation (pixel_mask rather than image_mask), 9 minutes,
Example with .json files (for testing DANDI GUI)
https://dandiarchive.org/dandiset/000026/draft/files?location=sub-EXC022%2Fses-MRI%2Fanat
Example video files in DANDI
This one does play inline (mkv format) https://dandiarchive.org/dandiset/000231/0.220904.1554/files?location=sub-219CR%2Fsub-219CR_ses-20190403T123013_behavior%2Bimage
This one does not (avi format) https://dandiarchive.org/dandiset/000568/0.230705.1633/files?location=sub-fCamk1%2Fsub-fCamk1_ses-fCamk1-200827-sess9-no-raw-data_behavior%2Becephys%2Bimage%2Bogen
Here's an example that refers to external .mp4 files https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/84b/0c1/84b0c1d5-0ccc-45af-95bf-c35777e3392e
Frank lab example
DANDISET: 000115 0.210914.1732
sub-despereaux/sub-despereaux_ses-despereaux-03_behavior+ecephys.nwb
Gillespie et al (2021) Hippocampal replay reflects specific past experiences rather than a plan for subsequent choice