From dce83d04566df1e0271e7932a42ded1b1c0015a1 Mon Sep 17 00:00:00 2001
From: Peter Briggs <peter.briggs@manchester.ac.uk>
Date: Tue, 19 Dec 2023 08:24:28 +0000
Subject: [PATCH] 'info' command: add bases mask & flow cell mode, and trap for
 bad directory.

---
 auto_process_ngs/cli/auto_process.py | 14 ++++++++++----
 1 file changed, 10 insertions(+), 4 deletions(-)

diff --git a/auto_process_ngs/cli/auto_process.py b/auto_process_ngs/cli/auto_process.py
index b635bbe50..39181a417 100644
--- a/auto_process_ngs/cli/auto_process.py
+++ b/auto_process_ngs/cli/auto_process.py
@@ -1295,10 +1295,16 @@ def info(args):
     if not analysis_dir:
         analysis_dir = os.getcwd()
     d = AutoProcess(analysis_dir,allow_save_params=False)
-    # Run ID
-    print("Run ID      : %s" % d.run_id)
-    print("Platform    : %s" % d.metadata.platform)
-    print("Sample sheet: %s" % d.params.sample_sheet)
+    # Check metadata and params were loaded
+    if not (d.metadata and d.params):
+        logger.fatal("Missing metadata and/or parameters")
+        sys.exit(1)
+    # Report information
+    print("Run ID        : %s" % d.run_id)
+    print("Platform      : %s" % d.metadata.platform)
+    print("Flow cell mode: %s" % d.metadata.flow_cell_mode)
+    print("Bases mask    : %s" % d.metadata.default_bases_mask)
+    print("Sample sheet  : %s" % d.params.sample_sheet)
 
 def metadata(args):
     """