diff --git a/gfftoolbox/__pycache__/__main__.cpython-37.pyc b/gfftoolbox/__pycache__/__main__.cpython-37.pyc index 9bb549d..56436f8 100644 Binary files a/gfftoolbox/__pycache__/__main__.cpython-37.pyc and b/gfftoolbox/__pycache__/__main__.cpython-37.pyc differ diff --git a/gfftoolbox/convert.py b/gfftoolbox/convert.py index 656f32d..9abd7d7 100644 --- a/gfftoolbox/convert.py +++ b/gfftoolbox/convert.py @@ -43,6 +43,11 @@ $ gff-toolbox convert -i Kp_ref.gff -f json + ## Converting a GFF to JSON + ## grabbing sequences from fasta + +$ gff-toolbox convert -i Kp_ref.gff -f json --fasta Kpneumoniae_genome.fasta + ## Converting a GFF to a mongoDB, grabbing sequences from fasta ## This will be added to a mongo db called in a collection named ## DBs are writen in the localhost 27027 mongo db connection of mongo shell diff --git a/images/example_plot_1.png b/images/example_plot_1.png new file mode 100644 index 0000000..9abc88c Binary files /dev/null and b/images/example_plot_1.png differ diff --git a/images/example_plot_2.png b/images/example_plot_2.png new file mode 100644 index 0000000..9280b92 Binary files /dev/null and b/images/example_plot_2.png differ