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--out_fname decoys_.sdf: Observed behavior:
--out_fname decoys_.sdf
(scrubber) althea@pixar:~/Documents/dev/cryokit/ALK$ scrub.py --in_fname decoys.smi --out_mode split --out_naming name --out_fname decoys_.sdf [ initializing multiprocessing pipeline ] [ storage initialized in FILE MODE ] [ 32 geometry workers initialized ] [ ▇|▅|▆|▆|▄|▃|▄|▁|▆|▅|▇|▃|▆|▆|▄|▄|▄|█|▇|▁|▃|▅|▇|▅|▅|▇|▄|▄|▄|▅|▆|▄ processing input mol. 4 ] Process MoleculeStorage: Traceback (most recent call last): File "/home/althea/programs/miniconda3/envs/scrubber/lib/python3.10/multiprocessing/process.py", line 314, in _bootstrap self.run() File "/home/althea/programs/scrubber/scrubber/storage.py", line 374, in run outfname = self._get_outfname(mol) File "/home/althea/programs/scrubber/scrubber/storage.py", line 416, in _get_outfname os.makedirs(dirname) File "/home/althea/programs/miniconda3/envs/scrubber/lib/python3.10/os.py", line 225, in makedirs mkdir(name, mode) FileNotFoundError: [Errno 2] No such file or directory: '' [ ▄|▇|▄|▄|█|▃|▆|▅|▃|▃|▄|▇|▃|▃|▄|▄|▄|▅|▆|▄|▅|▁|▃|▅|▁|▆|▄|▆|▃|█|▆|▇ processing input mol. 116 ] ( 23.587 mol/sec.)
--out_fname ./decoys_.sdf: Observed behavior:
--out_fname ./decoys_.sdf
Expected behavior:
The text was updated successfully, but these errors were encountered:
decoys.smi.txt
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sforli
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--out_fname decoys_.sdf
:Observed behavior:
Expected behavior:
--out_fname ./decoys_.sdf
:Observed behavior:
Expected behavior:
The text was updated successfully, but these errors were encountered: