From 58a0a6911119ec6a8173898c4784d4bc2e3c91c2 Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 08:50:40 +0100 Subject: [PATCH 1/7] Bump coverage version --- poetry.lock | 266 ++++++++++++++++++++++++++----------------------- pyproject.toml | 2 +- 2 files changed, 140 insertions(+), 128 deletions(-) diff --git a/poetry.lock b/poetry.lock index fd38a88f6..ad74a9299 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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implementation of the JSON5 data format." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "json5-0.9.25-py3-none-any.whl", hash = "sha256:34ed7d834b1341a86987ed52f3f76cd8ee184394906b6e22a1e0deb9ab294e8f"}, @@ -1958,7 +1970,7 @@ files = [ name = "jsonpointer" version = "3.0.0" description = "Identify specific nodes in a JSON document (RFC 6901)" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"}, @@ -2031,7 +2043,7 @@ notebook = "*" name = "jupyter-client" version = "8.6.3" description = "Jupyter protocol implementation and client libraries" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_client-8.6.3-py3-none-any.whl", hash = "sha256:e8a19cc986cc45905ac3362915f410f3af85424b4c0905e94fa5f2cb08e8f23f"}, @@ -2078,7 +2090,7 @@ test = ["flaky", "pexpect", "pytest"] name = 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A base package on which Jupyter projects rely." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_core-5.7.2-py3-none-any.whl", hash = "sha256:4f7315d2f6b4bcf2e3e7cb6e46772eba760ae459cd1f59d29eb57b0a01bd7409"}, @@ -2098,7 +2110,7 @@ test = ["ipykernel", "pre-commit", "pytest (<8)", "pytest-cov", "pytest-timeout" name = "jupyter-events" version = "0.10.0" description = "Jupyter Event System library" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_events-0.10.0-py3-none-any.whl", hash = "sha256:4b72130875e59d57716d327ea70d3ebc3af1944d3717e5a498b8a06c6c159960"}, @@ -2123,7 +2135,7 @@ test = ["click", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.19.0)", "p name = "jupyter-lsp" version = "2.2.5" description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter-lsp-2.2.5.tar.gz", hash = "sha256:793147a05ad446f809fd53ef1cd19a9f5256fd0a2d6b7ce943a982cb4f545001"}, @@ -2138,7 +2150,7 @@ jupyter-server = ">=1.1.2" name = "jupyter-server" version = "2.14.2" description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_server-2.14.2-py3-none-any.whl", hash = "sha256:47ff506127c2f7851a17bf4713434208fc490955d0e8632e95014a9a9afbeefd"}, @@ -2174,7 +2186,7 @@ test = ["flaky", "ipykernel", "pre-commit", "pytest (>=7.0,<9)", "pytest-console name = "jupyter-server-terminals" version = "0.5.3" description = "A Jupyter Server Extension Providing Terminals." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_server_terminals-0.5.3-py3-none-any.whl", hash = "sha256:41ee0d7dc0ebf2809c668e0fc726dfaf258fcd3e769568996ca731b6194ae9aa"}, @@ -2193,7 +2205,7 @@ test = ["jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-jupyter[server] (> name = "jupyterlab" version = "4.2.5" description = "JupyterLab computational environment" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyterlab-4.2.5-py3-none-any.whl", hash = "sha256:73b6e0775d41a9fee7ee756c80f58a6bed4040869ccc21411dc559818874d321"}, @@ -2228,7 +2240,7 @@ upgrade-extension = ["copier (>=9,<10)", "jinja2-time (<0.3)", "pydantic (<3.0)" name = "jupyterlab-pygments" version = "0.3.0" description = "Pygments theme using JupyterLab CSS variables" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyterlab_pygments-0.3.0-py3-none-any.whl", hash = "sha256:841a89020971da1d8693f1a99997aefc5dc424bb1b251fd6322462a1b8842780"}, @@ -2239,7 +2251,7 @@ files = [ name = "jupyterlab-server" version = "2.27.3" description = "A set of server components for JupyterLab and JupyterLab like applications." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyterlab_server-2.27.3-py3-none-any.whl", hash = "sha256:e697488f66c3db49df675158a77b3b017520d772c6e1548c7d9bcc5df7944ee4"}, @@ -2832,7 +2844,7 @@ dev = ["meson-python (>=0.13.1)", "numpy (>=1.25)", "pybind11 (>=2.6)", "setupto name = "matplotlib-inline" version = "0.1.7" description = "Inline Matplotlib backend for Jupyter" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "matplotlib_inline-0.1.7-py3-none-any.whl", hash = "sha256:df192d39a4ff8f21b1895d72e6a13f5fcc5099f00fa84384e0ea28c2cc0653ca"}, @@ -2887,7 +2899,7 @@ files = [ name = "mistune" version = "3.0.2" description = "A sane and fast Markdown parser with useful plugins and renderers" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "mistune-3.0.2-py3-none-any.whl", hash = "sha256:71481854c30fdbc938963d3605b72501f5c10a9320ecd412c121c163a1c7d205"}, @@ -3436,7 +3448,7 @@ icu = ["PyICU (>=1.0.0)"] name = "nbclient" version = "0.10.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." -optional = false +optional = true python-versions = ">=3.8.0" files = [ {file = "nbclient-0.10.0-py3-none-any.whl", hash = "sha256:f13e3529332a1f1f81d82a53210322476a168bb7090a0289c795fe9cc11c9d3f"}, @@ -3458,7 +3470,7 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>= name = "nbconvert" version = "7.16.4" description = "Converting Jupyter Notebooks (.ipynb files) to other formats. Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script. nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "nbconvert-7.16.4-py3-none-any.whl", hash = "sha256:05873c620fe520b6322bf8a5ad562692343fe3452abda5765c7a34b7d1aa3eb3"}, @@ -3496,7 +3508,7 @@ webpdf = ["playwright"] name = "nbformat" version = "5.10.4" description = "The Jupyter Notebook format" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "nbformat-5.10.4-py3-none-any.whl", hash = "sha256:3b48d6c8fbca4b299bf3982ea7db1af21580e4fec269ad087b9e81588891200b"}, @@ -3517,7 +3529,7 @@ test = ["pep440", "pre-commit", "pytest", "testpath"] name = "nest-asyncio" version = "1.6.0" description = "Patch asyncio to allow nested event loops" -optional = false +optional = true python-versions = ">=3.5" files = [ {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"}, @@ -3557,7 +3569,7 @@ files = [ name = "notebook" version = "7.2.2" description = "Jupyter Notebook - A web-based notebook environment for interactive computing" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "notebook-7.2.2-py3-none-any.whl", hash = "sha256:c89264081f671bc02eec0ed470a627ed791b9156cad9285226b31611d3e9fe1c"}, @@ -3580,7 +3592,7 @@ test = ["importlib-resources (>=5.0)", "ipykernel", "jupyter-server[test] (>=2.4 name = "notebook-shim" version = "0.2.4" description = "A shim layer for notebook traits and config" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "notebook_shim-0.2.4-py3-none-any.whl", hash = "sha256:411a5be4e9dc882a074ccbcae671eda64cceb068767e9a3419096986560e1cef"}, @@ -3936,9 +3948,9 @@ files = [ numpy = [ {version = ">=1.26.0", markers = "python_version >= \"3.12\""}, {version = ">=1.21.0", markers = "python_version == \"3.9\" and platform_system == \"Darwin\" and platform_machine == \"arm64\""}, - {version = ">=1.19.3", markers = "platform_system == \"Linux\" and platform_machine == \"aarch64\" and python_version >= \"3.8\" and python_version < \"3.10\" or python_version > \"3.9\" and python_version < \"3.10\" or python_version >= \"3.9\" and platform_system != \"Darwin\" and python_version < \"3.10\" or python_version >= \"3.9\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, {version = ">=1.21.4", markers = "python_version >= \"3.10\" and platform_system == \"Darwin\" and python_version < \"3.11\""}, {version = ">=1.21.2", markers = "platform_system != \"Darwin\" and python_version >= \"3.10\" and python_version < \"3.11\""}, + {version = ">=1.19.3", markers = "platform_system == \"Linux\" and platform_machine == \"aarch64\" and python_version >= \"3.8\" and python_version < \"3.10\" or python_version > \"3.9\" and python_version < \"3.10\" or python_version >= \"3.9\" and platform_system != \"Darwin\" and python_version < \"3.10\" or python_version >= \"3.9\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, {version = ">=1.23.5", markers = "python_version >= \"3.11\" and python_version < \"3.12\""}, ] @@ -3946,7 +3958,7 @@ numpy = [ name = "overrides" version = "7.7.0" description = "A decorator to automatically detect mismatch when overriding a method." -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "overrides-7.7.0-py3-none-any.whl", hash = "sha256:c7ed9d062f78b8e4c1a7b70bd8796b35ead4d9f510227ef9c5dc7626c60d7e49"}, @@ -4054,7 +4066,7 @@ xml = ["lxml (>=4.9.2)"] name = "pandocfilters" version = "1.5.1" description = "Utilities for writing pandoc filters in python" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ {file = "pandocfilters-1.5.1-py2.py3-none-any.whl", hash = "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc"}, @@ -4065,7 +4077,7 @@ files = [ name = "parso" version = "0.8.4" description = "A Python Parser" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "parso-0.8.4-py2.py3-none-any.whl", hash = "sha256:a418670a20291dacd2dddc80c377c5c3791378ee1e8d12bffc35420643d43f18"}, @@ -4123,7 +4135,7 @@ files = [ name = "pexpect" version = "4.9.0" description = "Pexpect allows easy control of interactive console applications." -optional = false +optional = true python-versions = "*" files = [ {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"}, @@ -4328,7 +4340,7 @@ virtualenv = ">=20.10.0" name = "prometheus-client" version = "0.21.0" description = "Python client for the Prometheus monitoring system." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "prometheus_client-0.21.0-py3-none-any.whl", hash = "sha256:4fa6b4dd0ac16d58bb587c04b1caae65b8c5043e85f778f42f5f632f6af2e166"}, @@ -4342,7 +4354,7 @@ twisted = ["twisted"] name = "prompt-toolkit" version = "3.0.48" description = "Library for building powerful interactive command lines in Python" -optional = false +optional = true python-versions = ">=3.7.0" files = [ {file = "prompt_toolkit-3.0.48-py3-none-any.whl", hash = "sha256:f49a827f90062e411f1ce1f854f2aedb3c23353244f8108b89283587397ac10e"}, @@ -4356,7 +4368,7 @@ wcwidth = "*" name = "psutil" version = "6.1.0" description = "Cross-platform lib for process and system monitoring in Python." -optional = false +optional = true python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" files = [ {file = "psutil-6.1.0-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:ff34df86226c0227c52f38b919213157588a678d049688eded74c76c8ba4a5d0"}, @@ -4425,7 +4437,7 @@ testqt = ["pytest-qt", "qtpy"] name = "ptyprocess" version = "0.7.0" description = "Run a subprocess in a pseudo terminal" -optional = false +optional = true python-versions = "*" files = [ {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"}, @@ -4436,7 +4448,7 @@ files = [ name = "pure-eval" version = "0.2.3" description = "Safely evaluate AST nodes without side effects" -optional = false +optional = true python-versions = "*" files = [ {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"}, @@ -4479,7 +4491,7 @@ test = ["pytest", "pytest-cov"] name = "pycparser" version = "2.22" description = "C parser in Python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"}, @@ -4772,7 +4784,7 @@ six = ">=1.5" name = "python-json-logger" version = "2.0.7" description = "A python library adding a json log formatter" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "python-json-logger-2.0.7.tar.gz", hash = "sha256:23e7ec02d34237c5aa1e29a070193a4ea87583bb4e7f8fd06d3de8264c4b2e1c"}, @@ -4794,7 +4806,7 @@ files = [ name = "pywin32" version = "308" description = "Python for Window Extensions" -optional = false +optional = true python-versions = "*" files = [ {file = "pywin32-308-cp310-cp310-win32.whl", hash = "sha256:796ff4426437896550d2981b9c2ac0ffd75238ad9ea2d3bfa67a1abd546d262e"}, @@ -4821,7 +4833,7 @@ files = [ name = "pywinpty" version = "2.0.14" description = "Pseudo terminal support for Windows from Python." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "pywinpty-2.0.14-cp310-none-win_amd64.whl", hash = "sha256:0b149c2918c7974f575ba79f5a4aad58bd859a52fa9eb1296cc22aa412aa411f"}, @@ -4912,7 +4924,7 @@ pyyaml = "*" name = "pyzmq" version = "26.2.0" description = "Python bindings for 0MQ" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "pyzmq-26.2.0-cp310-cp310-macosx_10_15_universal2.whl", hash = "sha256:ddf33d97d2f52d89f6e6e7ae66ee35a4d9ca6f36eda89c24591b0c40205a3629"}, @@ -5213,7 +5225,7 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "rfc3339-validator" version = "0.1.4" description = "A pure python RFC3339 validator" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ {file = "rfc3339_validator-0.1.4-py2.py3-none-any.whl", hash = "sha256:24f6ec1eda14ef823da9e36ec7113124b39c04d50a4d3d3a3c2859577e7791fa"}, @@ -5227,7 +5239,7 @@ six = "*" name = "rfc3986-validator" version = "0.1.1" description = "Pure python rfc3986 validator" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ {file = "rfc3986_validator-0.1.1-py2.py3-none-any.whl", hash = "sha256:2f235c432ef459970b4306369336b9d5dbdda31b510ca1e327636e01f528bfa9"}, @@ -5477,7 +5489,7 @@ test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "po name = "send2trash" version = "1.8.3" description = "Send file to trash natively under Mac OS X, Windows and Linux" -optional = false +optional = true python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" files = [ {file = "Send2Trash-1.8.3-py3-none-any.whl", hash = "sha256:0c31227e0bd08961c7665474a3d1ef7193929fedda4233843689baa056be46c9"}, @@ -5535,7 +5547,7 @@ files = [ name = "sniffio" version = "1.3.1" description = "Sniff out which async library your code is running under" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"}, @@ -5557,7 +5569,7 @@ files = [ name = "soupsieve" version = "2.6" description = "A modern CSS selector implementation for Beautiful Soup." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "soupsieve-2.6-py3-none-any.whl", hash = "sha256:e72c4ff06e4fb6e4b5a9f0f55fe6e81514581fca1515028625d0f299c602ccc9"}, @@ -5698,7 +5710,7 @@ test = ["pytest"] name = "stack-data" version = "0.5.1" description = "Extract data from python stack frames and tracebacks for informative displays" -optional = false +optional = true python-versions = "*" files = [ {file = "stack_data-0.5.1-py3-none-any.whl", hash = "sha256:5120731a18ba4c82cefcf84a945f6f3e62319ef413bfc210e32aca3a69310ba2"}, @@ -5804,7 +5816,7 @@ widechars = ["wcwidth"] name = "terminado" version = "0.18.1" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "terminado-0.18.1-py3-none-any.whl", hash = "sha256:a4468e1b37bb318f8a86514f65814e1afc977cf29b3992a4500d9dd305dcceb0"}, @@ -5847,7 +5859,7 @@ zarr = ["fsspec", "zarr"] name = "tinycss2" version = "1.4.0" description = "A tiny CSS parser" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "tinycss2-1.4.0-py3-none-any.whl", hash = "sha256:3a49cf47b7675da0b15d0c6e1df8df4ebd96e9394bb905a5775adb0d884c5289"}, @@ -5961,7 +5973,7 @@ optree = ["optree (>=0.12.0)"] name = "tornado" version = "6.4.1" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:163b0aafc8e23d8cdc3c9dfb24c5368af84a81e3364745ccb4427669bf84aec8"}, @@ -6001,7 +6013,7 @@ telegram = ["requests"] name = "traitlets" version = "5.14.3" description = "Traitlets Python configuration system" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"}, @@ -6055,7 +6067,7 @@ typing-extensions = ">=3.7.4.3" name = "types-python-dateutil" version = "2.9.0.20241003" description = "Typing stubs for python-dateutil" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "types-python-dateutil-2.9.0.20241003.tar.gz", hash = "sha256:58cb85449b2a56d6684e41aeefb4c4280631246a0da1a719bdbe6f3fb0317446"}, @@ -6088,7 +6100,7 @@ files = [ name = "uri-template" version = "1.3.0" description = "RFC 6570 URI Template Processor" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"}, @@ -6233,7 +6245,7 @@ watchmedo = ["PyYAML (>=3.10)"] name = "wcwidth" version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" -optional = false +optional = true python-versions = "*" files = [ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, @@ -6244,7 +6256,7 @@ files = [ name = "webcolors" version = "24.8.0" description = "A library for working with the color formats defined by HTML and CSS." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "webcolors-24.8.0-py3-none-any.whl", hash = "sha256:fc4c3b59358ada164552084a8ebee637c221e4059267d0f8325b3b560f6c7f0a"}, @@ -6259,7 +6271,7 @@ tests = ["coverage[toml]"] name = "webencodings" version = "0.5.1" description = "Character encoding aliases for legacy web content" -optional = false +optional = true python-versions = "*" files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, @@ -6270,7 +6282,7 @@ files = [ name = "websocket-client" version = "1.8.0" description = "WebSocket client for Python with low level API options" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"}, @@ -6432,4 +6444,4 @@ fractal-tasks = ["Pillow", "cellpose", "image_registration", "imageio-ffmpeg", " [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "28364bae78b751d9c70e4eec1323a5b26e530c704d5817cdc5bf1057716e17b9" +content-hash = "3847d5031efb2f749ca68ad00e60f2adbd725cf9111f8d7f18acc2654cb3cd8b" diff --git a/pyproject.toml b/pyproject.toml index b8cce3ebe..73a0c6b72 100755 --- a/pyproject.toml +++ b/pyproject.toml @@ -59,7 +59,7 @@ devtools = "^0.9.0" pre-commit = "^2.19.0" pytest = "^7.1.2" bumpver = "^2022.1118" -coverage = {extras = ["toml"], version = "^6.5.0"} +coverage = {extras = ["toml"], version = ">=7.6,<7.7"} jsonschema = "^4.16.0" mypy = "^1.3.0" requests = ">=2.28.0" From 8c2de351011628537dac111ee98d2454d7376056 Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 09:02:12 +0100 Subject: [PATCH 2/7] Use poetry-locked version of `coverage` --- .github/workflows/ci_poetry.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci_poetry.yml b/.github/workflows/ci_poetry.yml index 6b0fe6885..47e06a8ef 100644 --- a/.github/workflows/ci_poetry.yml +++ b/.github/workflows/ci_poetry.yml @@ -124,12 +124,14 @@ jobs: steps: - uses: actions/checkout@v4 + - run: pipx install poetry==1.8.2 + - run: poetry config virtualenvs.in-project true - uses: actions/setup-python@v5 with: - python-version: "3.10" + python-version: 3.10 - name: Install dependencies - run: python -m pip install --upgrade coverage[toml] + run: poetry install --only dev - name: Download data uses: actions/download-artifact@v4 From eae1ad7829fc36ade3d4701bf4366fdd114e1d4a Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 09:03:42 +0100 Subject: [PATCH 3/7] CHANGELOG [skip ci] --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 56a2a2334..38a2e93bb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,8 @@ # Unreleased * Tests: + * Use locked version of `coverage` in GitHub action (\#882). + * Bump `coverage` version from 6.5 to 7.6 (\#882). * Skip `test_import_ome_zarr_image_BIA` (\#879). # 1.3.4 From a38003d7232d2648ae6cb04d55fa4801bd08223d Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 09:04:18 +0100 Subject: [PATCH 4/7] BROKEN - skip most tests --- .github/workflows/ci_poetry.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci_poetry.yml b/.github/workflows/ci_poetry.yml index 47e06a8ef..99cde1b1d 100644 --- a/.github/workflows/ci_poetry.yml +++ b/.github/workflows/ci_poetry.yml @@ -109,7 +109,7 @@ jobs: - name: Test tasks with pytest env: COVERAGE_FILE: coverage-data-tasks-${{ matrix.python-version }} - run: poetry run coverage run -m pytest tests/dev tests/tasks -s --log-cli-level info + run: poetry run coverage run -m pytest tests/dev --ignore tests/tasks -s --log-cli-level info - name: Upload coverage data uses: actions/upload-artifact@v4 From da48efbf6abd5814bad534090745da8212c79332 Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 09:10:48 +0100 Subject: [PATCH 5/7] Fix GHA --- .github/workflows/ci_poetry.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci_poetry.yml b/.github/workflows/ci_poetry.yml index 99cde1b1d..ad3fe50a5 100644 --- a/.github/workflows/ci_poetry.yml +++ b/.github/workflows/ci_poetry.yml @@ -128,7 +128,7 @@ jobs: - run: poetry config virtualenvs.in-project true - uses: actions/setup-python@v5 with: - python-version: 3.10 + python-version: "3.10" - name: Install dependencies run: poetry install --only dev From fb1b01d04fca1ee6fa2469dceb4bb03afbf27b0f Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 09:13:51 +0100 Subject: [PATCH 6/7] Fix GHA --- .github/workflows/ci_poetry.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci_poetry.yml b/.github/workflows/ci_poetry.yml index ad3fe50a5..d3918f0f4 100644 --- a/.github/workflows/ci_poetry.yml +++ b/.github/workflows/ci_poetry.yml @@ -145,7 +145,7 @@ jobs: # We added this step to replace the variable `MERGE_COVERAGE_FILES: true` # in the next step, which had started to raise errors # (https://github.com/fractal-analytics-platform/fractal-server/pull/1725). - run: coverage combine coverage-data-* + run: poetry run coverage combine coverage-data-* - name: Add coverage comment to Pull Requests id: coverage_comment From 1c1000a4620e504da9f6d18cff7d0095843b3c71 Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Wed, 18 Dec 2024 09:19:00 +0100 Subject: [PATCH 7/7] Re-include all tests --- .github/workflows/ci_poetry.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci_poetry.yml b/.github/workflows/ci_poetry.yml index d3918f0f4..1b2f27bff 100644 --- a/.github/workflows/ci_poetry.yml +++ b/.github/workflows/ci_poetry.yml @@ -109,7 +109,7 @@ jobs: - name: Test tasks with pytest env: COVERAGE_FILE: coverage-data-tasks-${{ matrix.python-version }} - run: poetry run coverage run -m pytest tests/dev --ignore tests/tasks -s --log-cli-level info + run: poetry run coverage run -m pytest tests/dev tests/tasks -s --log-cli-level info - name: Upload coverage data uses: actions/upload-artifact@v4