CHANGELOG.txt

Version 2.0
15-Dec-2016
* New algorithm for PCA
* New flashpcaR

Version 1.2.6
24-Mar-2016
* Improvements in SCCA, especially flashpcaR::scca
* Renamed exclusion_regions.txt

Version 1.2.5
1-Dec-2015
* Fixed bug in reading PLINK bed files, allowing analysis of larger datasets.
* Clean-ups and better documentation for flashpcaR.

Version 1.2.1
21-Nov-2015
* Allow much larger PLINK datasets to be loaded into flashpca
* More documentation
* Prepare flashpcaR for CRAN
* Small cleanups 

Version 1.2
23-Dec-2014
* Merged devel branch, adding support for low/high memory PCA and sparse CCA

Version 1.1.2
12-Aug-2014
* Updated this file

Version 1.1.0
12-Aug-2014
* Static binary compiled with Eigen 3.2.2
* Static binary compiled with gcc -march=core2
* Fixed bug in saving of mean + sd for each SNP (--meansd option)

Version 1.0.0
21-May-2014
* Makefile now looks for Eigen and Boost in /usr/local, by default
* flashpca now computes proportion of variance explained by each eigenvector
* Experimental support for kernel PCA
* flashpca_x86-64 built with Boost 1.55.0, Eigen 3.2.1
* By default, do orthogonalisation; a bit slower but increases accuracy