From cb06b048b9b1f93add5e1e669402cdb34bac0543 Mon Sep 17 00:00:00 2001 From: John Davis Date: Wed, 21 Feb 2024 19:30:11 -0500 Subject: [PATCH 1/2] Create version 23.2.1 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 124 ++++++++++++++++++++++++++++- packages/app/setup.cfg | 4 +- packages/auth/HISTORY.rst | 8 +- packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 50 +++++++++++- packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 70 +++++++++++++++- packages/data/setup.cfg | 4 +- packages/files/HISTORY.rst | 24 +++++- packages/files/setup.cfg | 4 +- packages/job_execution/HISTORY.rst | 14 +++- packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 17 +++- packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 8 +- packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 18 ++++- packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 8 +- packages/schema/setup.cfg | 4 +- packages/selenium/HISTORY.rst | 18 ++++- packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 37 ++++++++- packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 21 ++++- packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 18 ++++- packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 8 +- packages/tool_shed/setup.cfg | 4 +- packages/tool_util/HISTORY.rst | 44 +++++++++- packages/tool_util/setup.cfg | 4 +- packages/tours/HISTORY.rst | 8 +- packages/tours/setup.cfg | 4 +- packages/util/HISTORY.rst | 28 ++++++- packages/util/setup.cfg | 4 +- packages/web_apps/HISTORY.rst | 73 ++++++++++++++++- packages/web_apps/setup.cfg | 4 +- packages/web_framework/HISTORY.rst | 18 ++++- packages/web_framework/setup.cfg | 4 +- packages/web_stack/HISTORY.rst | 11 ++- packages/web_stack/setup.cfg | 2 +- 43 files changed, 589 insertions(+), 100 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index fcc14e7239bf..44801643ff55 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "23.2" -VERSION_MINOR = "1.dev0" +VERSION_MINOR = "1" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index 9cb5ee0ad66e..a9763876fd08 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,11 +3,129 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* pin fs.dropboxfs to >=1 by `@bernt-matthias `_ in `#16451 `_ +* Remove unnecessary check: item cannot be None by `@jdavcs `_ in `#16550 `_ +* Fix: serialize `tool_shed_urls` directly from the API by `@davelopez `_ in `#16561 `_ +* Fix dependency update GitHub workflow by `@nsoranzo `_ in `#16639 `_ +* Ensure Job belongs to current SA session by `@jdavcs `_ in `#16647 `_ +* Account for shared usage between TS and galaxy apps by `@jdavcs `_ in `#16746 `_ +* move the email and username redacting from the role loop by `@martenson `_ in `#16805 `_ +* Fix shed unit test by `@mvdbeek `_ in `#16811 `_ +* chore: fix typos by `@afuetterer `_ in `#16851 `_ +* Fix bug in SQLAlchemy statement by `@jdavcs `_ in `#16881 `_ +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ +* Update help in relabel_from_file.xml by `@lldelisle `_ in `#16891 `_ +* Fix subtle bug in listify function + simplify list munging by `@jdavcs `_ in `#16904 `_ +* prep for updated h5py and typos by `@mr-c `_ in `#16963 `_ +* Enhancement to Tool Form page, Repeating form fields implement parameter instructions by `@hujambo-dunia `_ in `#17018 `_ +* Expose file_name property in DatasetFilenameWrapper by `@jdavcs `_ in `#17107 `_ +* Fix ``to_cwl`` for nested collections by `@mvdbeek `_ in `#17276 `_ +* Rollback invalidated transaction by `@jdavcs `_ in `#17280 `_ +* Install newer celery on python 3.8+ by `@mvdbeek `_ in `#17309 `_ +* Backport Rollback invalidated transaction: catch them earlier by `@mvdbeek `_ in `#17315 `_ +* Discard sqlalchemy session after task completion by `@mvdbeek `_ in `#17317 `_ +* Scope session for job runner monitor loop by `@mvdbeek `_ in `#17319 `_ +* Fix History contents `genome_build` filter postgresql bug by `@ahmedhamidawan `_ in `#17384 `_ +* Update python-multipart to 0.0.7 by `@nsoranzo `_ in `#17429 `_ +* Build param dict before creating entrypoint by `@mvdbeek `_ in `#17440 `_ +* Fix bug: true >> True by `@jdavcs `_ in `#17446 `_ +* Set metadata states on dataset association, not dataset by `@mvdbeek `_ in `#17474 `_ +* Remove two print statements by `@bernt-matthias `_ in `#17480 `_ +* Provide working routes.url_for every ASGI request by `@mvdbeek `_ in `#17497 `_ +============ +Enhancements +============ + +* Implement default locations for data and collection parameters. by `@jmchilton `_ in `#14955 `_ +* Enable job resubmissions in k8s runner by `@pcm32 `_ in `#15238 `_ +* Add parameter name to validation errors by `@bernt-matthias `_ in `#15440 `_ +* Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ +* Add ability to assert metadata properties on input dataset parameters by `@bernt-matthias `_ in `#15825 `_ +* Limit number of celery task executions per second per user by `@claudiofr `_ in `#16232 `_ +* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek `_ in `#16252 `_ +* Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by `@jdavcs `_ in `#16264 `_ +* Update Python dependencies by `@galaxybot `_ in `#16305 `_ +* Add carbon emissions admin configuration options by `@Renni771 `_ in `#16307 `_ +* Migrate a part of the users API to Fast API by `@heisner-tillman `_ in `#16341 `_ +* Update Python dependencies by `@galaxybot `_ in `#16360 `_ +* Add Invenio RDM repository integration by `@davelopez `_ in `#16381 `_ +* Update Python dependencies by `@galaxybot `_ in `#16389 `_ +* Update Python dependencies by `@galaxybot `_ in `#16409 `_ +* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez `_ in `#16420 `_ +* Towards SQLAlchemy 2.0 (upgrades to SA ORM usage in /test) by `@jdavcs `_ in `#16431 `_ +* SQLAlchemy 2.0 upgrades to ORM usage in /lib by `@jdavcs `_ in `#16434 `_ +* Update Python dependencies by `@galaxybot `_ in `#16436 `_ +* Update Python dependencies by `@galaxybot `_ in `#16485 `_ +* Rename MetadataEqualsValidator by `@bernt-matthias `_ in `#16489 `_ +* Add support for CILogon deployments in different regions than the US by `@uwwint `_ in `#16490 `_ +* Refactor/OIDC custos by `@uwwint `_ in `#16497 `_ +* Update Python dependencies by `@galaxybot `_ in `#16521 `_ +* Move database access code out of ``galaxy.util`` by `@jdavcs `_ in `#16526 `_ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ +* Update Python dependencies by `@galaxybot `_ in `#16577 `_ +* Vueify Tool Form Data Selector by `@guerler `_ in `#16578 `_ +* Workflow Comments 💬 by `@ElectronicBlueberry `_ in `#16612 `_ +* Switch out conditional requirement parser by `@mvdbeek `_ in `#16636 `_ +* Add scroll pagination and username filter to `HistoryPublishedList` by `@ahmedhamidawan `_ in `#16642 `_ +* Bump samtools converters by `@bernt-matthias `_ in `#16668 `_ +* Galaxy Markdown - add workflow image and license to Galaxy markdown. by `@jmchilton `_ in `#16672 `_ +* Implement instance URLs in Galaxy markdown. by `@jmchilton `_ in `#16675 `_ +* Change Sentry error reporting plug-in by `@kysrpex `_ in `#16686 `_ +* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola `_ in `#16690 `_ +* Enhance task monitor composable by `@davelopez `_ in `#16695 `_ +* Misc. edits/refactorings to session handling by `@jdavcs `_ in `#16712 `_ +* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs `_ in `#16724 `_ +* Update Python dependencies by `@galaxybot `_ in `#16735 `_ +* Convert ISO to UTC for Date/Time in workflow reports by `@assuntad23 `_ in `#16758 `_ +* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf `_ in `#16762 `_ +* Update Python dependencies by `@galaxybot `_ in `#16770 `_ +* Migrate a part of the jobs API to Fast API by `@heisner-tillman `_ in `#16778 `_ +* Add EGI Check-in as OIDC authentication option by `@enolfc `_ in `#16782 `_ +* Replace file_name property with get_file_name function by `@SergeyYakubov `_ in `#16783 `_ +* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ +* Galaxy help forum integration by `@ElectronicBlueberry `_ in `#16798 `_ +* Update Python dependencies by `@galaxybot `_ in `#16807 `_ +* Another batch of SA2.0 edits in TS2.0 (part 3) by `@jdavcs `_ in `#16833 `_ +* Remove remaining legacy backbone form input elements by `@guerler `_ in `#16834 `_ +* SQLAlchemy 2.0 upgrades (part 4) by `@jdavcs `_ in `#16852 `_ +* Update Python dependencies by `@galaxybot `_ in `#16853 `_ +* Drop unused HistoryContentManager code and related tests by `@jdavcs `_ in `#16882 `_ +* Vueify Visualizations Grid by `@guerler `_ in `#16892 `_ +* Update Python dependencies by `@galaxybot `_ in `#16896 `_ +* Enable some flake8-logging-format rules in ruff by `@nsoranzo `_ in `#16915 `_ +* Remove "Create Workflow" form and allow workflow creation in editor by `@ahmedhamidawan `_ in `#16938 `_ +* Update Python dependencies by `@galaxybot `_ in `#16939 `_ +* Add helper to get dataset or collection via ``src`` and ``id`` by `@mr-c `_ in `#16953 `_ +* Allow non-optional integer/float params without value attribute by `@nsoranzo `_ in `#16966 `_ +* Update Python dependencies by `@galaxybot `_ in `#16978 `_ +* Fix invocation report to target correct workflow version. by `@jmchilton `_ in `#17008 `_ +* Update Python dependencies by `@galaxybot `_ in `#17011 `_ +* Upgrade job manager's index_query method to SA2.0 by `@jdavcs `_ in `#17020 `_ +* optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ +* Require name for workflows on save, set default to Unnamed Workflow by `@ahmedhamidawan `_ in `#17038 `_ +* Update Python dependencies by `@galaxybot `_ in `#17050 `_ +* Migrate groups API to fastAPI by `@arash77 `_ in `#17051 `_ +* Migrate ItemTags API to FastAPI by `@arash77 `_ in `#17064 `_ +* Update Python dependencies by `@galaxybot `_ in `#17084 `_ +* Use python-isal for fast zip deflate compression in rocrate export by `@mvdbeek `_ in `#17342 `_ + +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ +* Revert "[23.1] Enable job resubmissions in k8s runner" by `@nuwang `_ in `#17323 `_ +* Fix succces typo by `@mvdbeek `_ in `#17481 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 19d457e3ae42..60076e56602d 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -86,4 +86,4 @@ console_scripts = [options.packages.find] exclude = galaxy.tools.bundled* - tests* + tests* \ No newline at end of file diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index b748d4f18ccc..2ab90937753e 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ---------- -23.2.dev0 ---------- - +------------------- +23.2.1 (2024-02-21) +------------------- +No recorded changes since last release ------------------- 23.1.4 (2024-01-04) diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index 08dd19dcfcd3..5bff0436b8ee 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index b4a967d57543..15e803dea1f3 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,11 +3,55 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* pin fs.dropboxfs to >=1 by `@bernt-matthias `_ in `#16451 `_ +* MINERVA display application: enable cors, add for tabular by `@hexylena `_ in `#16737 `_ +* chore: fix typos by `@afuetterer `_ in `#16851 `_ +* Add back 1.1.0 version of Filtering1 tool by `@mvdbeek `_ in `#16883 `_ +* Set webdav file source to use temp files by default by `@davelopez `_ in `#17388 `_ +============ +Enhancements +============ + +* Update cellxgene interactive tool to 1.1.1 by `@pcm32 `_ in `#15313 `_ +* Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ +* Limit number of celery task executions per second per user by `@claudiofr `_ in `#16232 `_ +* Add carbon emissions admin configuration options by `@Renni771 `_ in `#16307 `_ +* Add Invenio RDM repository integration by `@davelopez `_ in `#16381 `_ +* Add new datatype: STL by `@TanguyGen `_ in `#16478 `_ +* add new tabular file formats cns,cnr and cnn to datatypes_conf.xml.sample file as they are neaded for cnvkit galaxy tools by `@khaled196 `_ in `#16503 `_ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ +* Implement datatype upload warnings by `@jmchilton `_ in `#16564 `_ +* Support new genome browser chain file format by `@claudiofr `_ in `#16576 `_ +* Update Python dependencies by `@galaxybot `_ in `#16577 `_ +* Implement instance URLs in Galaxy markdown. by `@jmchilton `_ in `#16675 `_ +* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola `_ in `#16690 `_ +* Update datatypes_conf.xml.sample with docx type by `@yvanlebras `_ in `#16713 `_ +* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf `_ in `#16762 `_ +* Add EGI Check-in as OIDC authentication option by `@enolfc `_ in `#16782 `_ +* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ +* Galaxy help forum integration by `@ElectronicBlueberry `_ in `#16798 `_ +* Remove record access handling for Invenio RDM plugin by `@davelopez `_ in `#16900 `_ +* optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ +* Support configuring job metrics inline, update documentation by `@natefoo `_ in `#17178 `_ +* Add binary datatypes for intermediate output of fastk tools by `@astrovsky01 `_ in `#17265 `_ +* Add magres datatype by `@martenson `_ in `#17499 `_ + +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ +* Remove xml remnant in sample yml job conf by `@bernt-matthias `_ in `#16609 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 2de076f220ea..8d7ca0cc4e81 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index fcb4348e9315..b29678af6df2 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,11 +3,75 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* Rename to_dict to populate in FormDefintion to fix bug by `@jdavcs `_ in `#16553 `_ +* MINERVA display application: enable cors, add for tabular by `@hexylena `_ in `#16737 `_ +* Use AlignedSegment.to_string by `@mvdbeek `_ in `#16803 `_ +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ +* prep for updated h5py and typos by `@mr-c `_ in `#16963 `_ +* Fix cardinality violation error: subquery returns multiple results by `@jdavcs `_ in `#17224 `_ +* Fix Display Application link generation by `@mvdbeek `_ in `#17227 `_ +* Display application fixes and tests by `@mvdbeek `_ in `#17233 `_ +* Rollback invalidated transaction by `@jdavcs `_ in `#17280 `_ +* Set metadata states on dataset association, not dataset by `@mvdbeek `_ in `#17474 `_ +* Provide working routes.url_for every ASGI request by `@mvdbeek `_ in `#17497 `_ +============ +Enhancements +============ + +* Implement default locations for data and collection parameters. by `@jmchilton `_ in `#14955 `_ +* Display beginning of non-text files as text instead of triggering a download by `@SergeyYakubov `_ in `#15447 `_ +* Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ +* Limit number of celery task executions per second per user by `@claudiofr `_ in `#16232 `_ +* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek `_ in `#16252 `_ +* Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by `@jdavcs `_ in `#16264 `_ +* Update Python dependencies by `@galaxybot `_ in `#16409 `_ +* Towards SQLAlchemy 2.0 (upgrades to SA ORM usage in /test) by `@jdavcs `_ in `#16431 `_ +* SQLAlchemy 2.0 upgrades to ORM usage in /lib by `@jdavcs `_ in `#16434 `_ +* Update Python dependencies by `@galaxybot `_ in `#16436 `_ +* Implement datatype upload warnings by `@jmchilton `_ in `#16564 `_ +* Support new genome browser chain file format by `@claudiofr `_ in `#16576 `_ +* Workflow Comments 💬 by `@ElectronicBlueberry `_ in `#16612 `_ +* Bump samtools converters by `@bernt-matthias `_ in `#16668 `_ +* Misc. edits/refactorings to session handling by `@jdavcs `_ in `#16712 `_ +* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs `_ in `#16724 `_ +* Migrate `collection elements` store to Pinia by `@davelopez `_ in `#16725 `_ +* Reset autocommit to False by `@jdavcs `_ in `#16745 `_ +* Drop legacy server-side search by `@jdavcs `_ in `#16755 `_ +* Optimize iteration in DatasetInstance model + SA2.0 fix by `@jdavcs `_ in `#16776 `_ +* Migrate a part of the jobs API to Fast API by `@heisner-tillman `_ in `#16778 `_ +* Replace file_name property with get_file_name function by `@SergeyYakubov `_ in `#16783 `_ +* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ +* Allow partial matches in workflow name tag search and search all tags for unquoted query by `@ahmedhamidawan `_ in `#16860 `_ +* Vueify Visualizations Grid by `@guerler `_ in `#16892 `_ +* Standardize to W3C naming for color. by `@dannon `_ in `#16949 `_ +* Move and re-use persist_extra_files by `@mvdbeek `_ in `#16955 `_ +* Fix invocation report to target correct workflow version. by `@jmchilton `_ in `#17008 `_ +* optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ +* Use python-isal for fast zip deflate compression in rocrate export by `@mvdbeek `_ in `#17342 `_ +* Add magres datatype by `@martenson `_ in `#17499 `_ + +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ +* Merge release_23.1 into dev by `@mvdbeek `_ in `#16768 `_ +* Create db head merge revision. by `@dannon `_ in `#16838 `_ +* merge release_23.1 into dev by `@martenson `_ in `#16933 `_ +* Minor clarification/typo fix in datatypes.data by `@dannon `_ in `#16993 `_ +* Fix `.file_name` access in merge forward by `@mvdbeek `_ in `#17097 `_ +* Backport model store fixes by `@mvdbeek `_ in `#17439 `_ +* Fix succces typo by `@mvdbeek `_ in `#17481 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index b0cf1fe87892..64e2ff756ffb 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -72,4 +72,4 @@ console_scripts = [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 9d69e741bf0c..1da4a66edbb6 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,11 +3,29 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +========= +Bug fixes +========= + +* pin fs.dropboxfs to >=1 by `@bernt-matthias `_ in `#16451 `_ +* Write to a temp filename in posix file source plugin by `@natefoo `_ in `#17350 `_ +* Set webdav file source to use temp files by default by `@davelopez `_ in `#17388 `_ +* More defensive access of extra props in filesources by `@nuwang `_ in `#17445 `_ + +============ +Enhancements +============ +* Add Invenio RDM repository integration by `@davelopez `_ in `#16381 `_ +* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez `_ in `#16420 `_ +* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola `_ in `#16690 `_ +* Remove record access handling for Invenio RDM plugin by `@davelopez `_ in `#16900 `_ +* Enhance Invenio RDM integration by `@davelopez `_ in `#16964 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index cbc4c24a10c8..e1308efe7436 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -41,4 +41,4 @@ python_requires = >=3.7 [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 9d1316f79299..258e210050f3 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,11 +3,19 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +============ +Enhancements +============ +* Replace file_name property with get_file_name function by `@SergeyYakubov `_ in `#16783 `_ +* Enable some flake8-logging-format rules in ruff by `@nsoranzo `_ in `#16915 `_ +* Move and re-use persist_extra_files by `@mvdbeek `_ in `#16955 `_ +* optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 74fd57cb0489..38b8d3f8c7ee 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index c970ae663013..a6c336b703eb 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,11 +3,22 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* Add support for Cgroupsv2 by `@natefoo `_ in `#17169 `_ +============ +Enhancements +============ +* Support configuring job metrics inline, update documentation by `@natefoo `_ in `#17178 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index 454bf03ba996..680449b2a0cd 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index a65b1e832a2f..d8b13be9b472 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ---------- -23.2.dev0 ---------- - +------------------- +23.2.1 (2024-02-21) +------------------- +No recorded changes since last release ------------------- 23.1.4 (2024-01-04) diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index f8952f13d3ce..f7d62ad9d5f0 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index 677137919c4d..adef5f150781 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +============ +Enhancements +============ + +* Move and re-use persist_extra_files by `@mvdbeek `_ in `#16955 `_ +* optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ + +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index dc53014e495f..62de50b0faa5 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index a23b80b80131..af64937b2fa9 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,8 +3,8 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- -* First release. +First release diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 79c3d4975361..9d56cf619586 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -26,7 +26,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -38,4 +38,4 @@ python_requires = >=3.7 [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index 8ebee0e42135..b9fecf917c52 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +============ +Enhancements +============ +* Vueify Data Uploader by `@guerler `_ in `#16472 `_ +* Create reusable `FilterMenu` with advanced options by `@ahmedhamidawan `_ in `#16522 `_ +* Implement datatype upload warnings by `@jmchilton `_ in `#16564 `_ +* Update Python dependencies by `@galaxybot `_ in `#16577 `_ +* Vueify Tool Form Data Selector by `@guerler `_ in `#16578 `_ +* Workflow Comments 💬 by `@ElectronicBlueberry `_ in `#16612 `_ +* Workflow Embed by `@ElectronicBlueberry `_ in `#16657 `_ +* Remove "Create Workflow" form and allow workflow creation in editor by `@ahmedhamidawan `_ in `#16938 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index 3153427a89da..a8098a8a53f0 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index 2c1e4ef777d1..eb12be6502e8 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,11 +3,42 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +========= +Bug fixes +========= + +* Fix: serialize `tool_shed_urls` directly from the API by `@davelopez `_ in `#16561 `_ +* Restore ToolsApi and create new api route for new panel structure by `@ahmedhamidawan `_ in `#16872 `_ +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ +* Make payload optional again for create tag API by `@nsoranzo `_ in `#17144 `_ +* Only check access permissions in `/api/{history_dataset_collection_id}/contents/{dataset_collection_id}` by `@mvdbeek `_ in `#17459 `_ + +============ +Enhancements +============ +* Implement default locations for data and collection parameters. by `@jmchilton `_ in `#14955 `_ +* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek `_ in `#16252 `_ +* Migrate a part of the users API to Fast API by `@heisner-tillman `_ in `#16341 `_ +* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan `_ in `#16739 `_ +* Don't copy collection elements in ``test_dataset_collection_hide_originals`` by `@nsoranzo `_ in `#16747 `_ +* Drop legacy server-side search by `@jdavcs `_ in `#16755 `_ +* Migrate a part of the jobs API to Fast API by `@heisner-tillman `_ in `#16778 `_ +* Vueify Visualizations Grid by `@guerler `_ in `#16892 `_ +* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan `_ in `#16928 `_ +* Require name for workflows on save, set default to Unnamed Workflow by `@ahmedhamidawan `_ in `#17038 `_ +* Migrate ItemTags API to FastAPI by `@arash77 `_ in `#17064 `_ + +============= +Other changes +============= + +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 9cba885d2015..04ec532236df 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 122ba06d5c85..18801becae8d 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,11 +3,26 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +========= +Bug fixes +========= + +* Restore ToolsApi and create new api route for new panel structure by `@ahmedhamidawan `_ in `#16872 `_ + +============ +Enhancements +============ +* Implement default locations for data and collection parameters. by `@jmchilton `_ in `#14955 `_ +* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek `_ in `#16252 `_ +* Augment pgcleanup to allow periodically deleting old datasets. by `@jmchilton `_ in `#16340 `_ +* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan `_ in `#16739 `_ +* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan `_ in `#16928 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index ad0ae37011f9..31cc101d333a 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index ae3643faabfb..d3bdb4fba374 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +========= +Bug fixes +========= + +* Tool Shed 2.0 fixes by `@nsoranzo `_ in `#16825 `_ + +============ +Enhancements +============ +* Limit number of celery task executions per second per user by `@claudiofr `_ in `#16232 `_ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 2ec0e9cf18be..46e9a899dc3b 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index a23b80b80131..af64937b2fa9 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,8 +3,8 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- -* First release. +First release diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index 918383f10e60..b81533d0fbb1 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -26,7 +26,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -38,4 +38,4 @@ python_requires = >=3.7 [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 9b74fc7f1d47..60401be88557 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,11 +3,49 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* Never consider `_galaxy_` conda env as unused by `@bernt-matthias `_ in `#16460 `_ +* chore: fix typos by `@afuetterer `_ in `#16851 `_ +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ +* Quote singularity env parameters by `@bernt-matthias `_ in `#17055 `_ +* Remove duplicates when copying sections for tool panel view by `@bernt-matthias `_ in `#17117 `_ +* Display application fixes and tests by `@mvdbeek `_ in `#17233 `_ +============ +Enhancements +============ + +* Implement default locations for data and collection parameters. by `@jmchilton `_ in `#14955 `_ +* Add framework test for profile behavior of `format="input"` by `@bernt-matthias `_ in `#15482 `_ +* Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ +* Add ability to assert metadata properties on input dataset parameters by `@bernt-matthias `_ in `#15825 `_ +* Migrate a part of the users API to Fast API by `@heisner-tillman `_ in `#16341 `_ +* Update Python dependencies by `@galaxybot `_ in `#16436 `_ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ +* Document that required text parameters need a validator by `@bernt-matthias `_ in `#16538 `_ +* Include `regex` when linting validators by `@davelopez `_ in `#16684 `_ +* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan `_ in `#16739 `_ +* Replace file_name property with get_file_name function by `@SergeyYakubov `_ in `#16783 `_ +* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ +* Remove remaining legacy backbone form input elements by `@guerler `_ in `#16834 `_ +* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan `_ in `#16928 `_ +* optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ +* Enhance xsd schema and allow simpler assertion lists by `@mvdbeek `_ in `#17134 `_ + +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ +* Explicitly document default of multiple by `@bernt-matthias `_ in `#16625 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index 874b196fa949..2ba705ba18ee 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -68,4 +68,4 @@ edam = [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index acaa60c60098..a280f49247be 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,11 +3,11 @@ History .. to_doc ---------- -23.2.dev0 ---------- - +------------------- +23.2.1 (2024-02-21) +------------------- +No recorded changes since last release ------------------- 23.1.4 (2024-01-04) diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index b3fd94cf98b5..2feedaf8e86e 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -44,4 +44,4 @@ console_scripts = [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index f9dc7a68a172..8d40bda535df 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,11 +3,33 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ + +============ +Enhancements +============ + +* Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ +* Move database access code out of ``galaxy.util`` by `@jdavcs `_ in `#16526 `_ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ +* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ +* Allow partial matches in workflow name tag search and search all tags for unquoted query by `@ahmedhamidawan `_ in `#16860 `_ +* Use python-isal for fast zip deflate compression in rocrate export by `@mvdbeek `_ in `#17342 `_ +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index d54b58c2ae2f..a2c020cc0119 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -55,4 +55,4 @@ template = [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index 0658698451aa..7ff6c3bac1f1 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,11 +3,78 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + + +========= +Bug fixes +========= + +* Rename to_dict to populate in FormDefintion to fix bug by `@jdavcs `_ in `#16553 `_ +* Fix: serialize `tool_shed_urls` directly from the API by `@davelopez `_ in `#16561 `_ +* chore: fix typos by `@afuetterer `_ in `#16851 `_ +* Restore ToolsApi and create new api route for new panel structure by `@ahmedhamidawan `_ in `#16872 `_ +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ +* Make payload optional again for create tag API by `@nsoranzo `_ in `#17144 `_ +* Fix Display Application link generation by `@mvdbeek `_ in `#17227 `_ +* Display application fixes and tests by `@mvdbeek `_ in `#17233 `_ +* Respect ``upstream_gzip`` setting when streaming dataset collection archive by `@mvdbeek `_ in `#17400 `_ +* Fix history bulk operations menu conditions by `@davelopez `_ in `#17433 `_ +* Only check access permissions in `/api/{history_dataset_collection_id}/contents/{dataset_collection_id}` by `@mvdbeek `_ in `#17459 `_ +* Set metadata states on dataset association, not dataset by `@mvdbeek `_ in `#17474 `_ +* Provide working routes.url_for every ASGI request by `@mvdbeek `_ in `#17497 `_ +============ +Enhancements +============ + +* Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ +* Limit number of celery task executions per second per user by `@claudiofr `_ in `#16232 `_ +* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek `_ in `#16252 `_ +* Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by `@jdavcs `_ in `#16264 `_ +* Notifications admin panel by `@itisAliRH `_ in `#16278 `_ +* Migrate cloud API to Fast API by `@heisner-tillman `_ in `#16296 `_ +* Drop (admin only) userskeys controller by `@dannon `_ in `#16318 `_ +* Migrate a part of the users API to Fast API by `@heisner-tillman `_ in `#16341 `_ +* Add Invenio RDM repository integration by `@davelopez `_ in `#16381 `_ +* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez `_ in `#16420 `_ +* SQLAlchemy 2.0 upgrades to ORM usage in /lib by `@jdavcs `_ in `#16434 `_ +* Update Python dependencies by `@galaxybot `_ in `#16436 `_ +* Published Workflow Sharing Page Overhaul by `@ElectronicBlueberry `_ in `#16510 `_ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ +* Update Python dependencies by `@galaxybot `_ in `#16577 `_ +* Workflow Comments 💬 by `@ElectronicBlueberry `_ in `#16612 `_ +* Galaxy Markdown - add workflow image and license to Galaxy markdown. by `@jmchilton `_ in `#16672 `_ +* Implement instance URLs in Galaxy markdown. by `@jmchilton `_ in `#16675 `_ +* Enhance task monitor composable by `@davelopez `_ in `#16695 `_ +* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs `_ in `#16724 `_ +* Migrate `collection elements` store to Pinia by `@davelopez `_ in `#16725 `_ +* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan `_ in `#16739 `_ +* Don't copy collection elements in ``test_dataset_collection_hide_originals`` by `@nsoranzo `_ in `#16747 `_ +* Drop legacy server-side search by `@jdavcs `_ in `#16755 `_ +* Migrate a part of the jobs API to Fast API by `@heisner-tillman `_ in `#16778 `_ +* Replace file_name property with get_file_name function by `@SergeyYakubov `_ in `#16783 `_ +* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ +* Galaxy help forum integration by `@ElectronicBlueberry `_ in `#16798 `_ +* SQLAlchemy 2.0 upgrades (part 4) by `@jdavcs `_ in `#16852 `_ +* Vueify Visualizations Grid by `@guerler `_ in `#16892 `_ +* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan `_ in `#16928 `_ +* Remove "Create Workflow" form and allow workflow creation in editor by `@ahmedhamidawan `_ in `#16938 `_ +* Update API tool_panels route conditions by `@dannon `_ in `#16991 `_ +* Fix invocation report to target correct workflow version. by `@jmchilton `_ in `#17008 `_ +* Upgrade job manager's index_query method to SA2.0 by `@jdavcs `_ in `#17020 `_ +* Require name for workflows on save, set default to Unnamed Workflow by `@ahmedhamidawan `_ in `#17038 `_ +* Migrate groups API to fastAPI by `@arash77 `_ in `#17051 `_ +* Migrate ItemTags API to FastAPI by `@arash77 `_ in `#17064 `_ + +============= +Other changes +============= +* Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ +* Fix succces typo by `@mvdbeek `_ in `#17481 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index ea16d9e6b487..52ba906f16c5 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -75,4 +75,4 @@ python_requires = >=3.7 [options.packages.find] exclude = tests* - tool_shed.test* + tool_shed.test* \ No newline at end of file diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index a612f74462c9..6dddb988e61b 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,11 +3,23 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +========= +Bug fixes +========= + +* Ruff and flake8 fixes by `@nsoranzo `_ in `#16884 `_ +* Provide working routes.url_for every ASGI request by `@mvdbeek `_ in `#17497 `_ + +============ +Enhancements +============ +* Drop (admin only) userskeys controller by `@dannon `_ in `#16318 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index df380149bacd..8cdd12042fc0 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True @@ -48,4 +48,4 @@ python_requires = >=3.7 [options.packages.find] exclude = - tests* + tests* \ No newline at end of file diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index b533d6cd7632..b6b5b2a2fd6f 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,11 +3,16 @@ History .. to_doc ---------- -23.2.dev0 ---------- +------------------- +23.2.1 (2024-02-21) +------------------- + +============ +Enhancements +============ +* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ ------------------- 23.1.4 (2024-01-04) diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index 69eecdcbaaa7..1872a6050e97 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 23.2.dev0 +version = 23.2.1 [options] include_package_data = True From f0fbe773b6696c7f7316b3cae1b97207e83e9771 Mon Sep 17 00:00:00 2001 From: John Davis Date: Wed, 21 Feb 2024 19:30:14 -0500 Subject: [PATCH 2/2] Start work on 23.2.2.dev0 --- lib/galaxy/version.py | 2 +- packages/app/HISTORY.rst | 6 ++++++ packages/app/setup.cfg | 2 +- packages/auth/HISTORY.rst | 6 ++++++ packages/auth/setup.cfg | 2 +- packages/config/HISTORY.rst | 6 ++++++ packages/config/setup.cfg | 2 +- packages/data/HISTORY.rst | 6 ++++++ packages/data/setup.cfg | 2 +- packages/files/HISTORY.rst | 6 ++++++ packages/files/setup.cfg | 2 +- packages/job_execution/HISTORY.rst | 6 ++++++ packages/job_execution/setup.cfg | 2 +- packages/job_metrics/HISTORY.rst | 6 ++++++ packages/job_metrics/setup.cfg | 2 +- packages/navigation/HISTORY.rst | 6 ++++++ packages/navigation/setup.cfg | 2 +- packages/objectstore/HISTORY.rst | 6 ++++++ packages/objectstore/setup.cfg | 2 +- packages/schema/HISTORY.rst | 6 ++++++ packages/schema/setup.cfg | 2 +- packages/selenium/HISTORY.rst | 6 ++++++ packages/selenium/setup.cfg | 2 +- packages/test_api/HISTORY.rst | 6 ++++++ packages/test_api/setup.cfg | 2 +- packages/test_base/HISTORY.rst | 6 ++++++ packages/test_base/setup.cfg | 2 +- packages/test_driver/HISTORY.rst | 6 ++++++ packages/test_driver/setup.cfg | 2 +- packages/tool_shed/HISTORY.rst | 6 ++++++ packages/tool_shed/setup.cfg | 2 +- packages/tool_util/HISTORY.rst | 6 ++++++ packages/tool_util/setup.cfg | 2 +- packages/tours/HISTORY.rst | 6 ++++++ packages/tours/setup.cfg | 2 +- packages/util/HISTORY.rst | 6 ++++++ packages/util/setup.cfg | 2 +- packages/web_apps/HISTORY.rst | 6 ++++++ packages/web_apps/setup.cfg | 2 +- packages/web_framework/HISTORY.rst | 6 ++++++ packages/web_framework/setup.cfg | 2 +- packages/web_stack/HISTORY.rst | 6 ++++++ packages/web_stack/setup.cfg | 2 +- 43 files changed, 148 insertions(+), 22 deletions(-) diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py index 44801643ff55..e096ee69ddff 100644 --- a/lib/galaxy/version.py +++ b/lib/galaxy/version.py @@ -1,3 +1,3 @@ VERSION_MAJOR = "23.2" -VERSION_MINOR = "1" +VERSION_MINOR = "2.dev0" VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "") diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst index a9763876fd08..64214f9d66f8 100644 --- a/packages/app/HISTORY.rst +++ b/packages/app/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg index 60076e56602d..f56d0672498f 100644 --- a/packages/app/setup.cfg +++ b/packages/app/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-app url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst index 2ab90937753e..fc8cb6b4ac9c 100644 --- a/packages/auth/HISTORY.rst +++ b/packages/auth/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg index 5bff0436b8ee..179fcca645a9 100644 --- a/packages/auth/setup.cfg +++ b/packages/auth/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-auth url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst index 15e803dea1f3..29278dbfb967 100644 --- a/packages/config/HISTORY.rst +++ b/packages/config/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg index 8d7ca0cc4e81..7ddd19aa5973 100644 --- a/packages/config/setup.cfg +++ b/packages/config/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-config url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst index b29678af6df2..87427e1c99a9 100644 --- a/packages/data/HISTORY.rst +++ b/packages/data/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg index 64e2ff756ffb..feff5476c00c 100644 --- a/packages/data/setup.cfg +++ b/packages/data/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-data url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst index 1da4a66edbb6..7363eff98e14 100644 --- a/packages/files/HISTORY.rst +++ b/packages/files/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg index e1308efe7436..3be0f21c2438 100644 --- a/packages/files/setup.cfg +++ b/packages/files/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-files url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst index 258e210050f3..1652ab6a8076 100644 --- a/packages/job_execution/HISTORY.rst +++ b/packages/job_execution/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg index 38b8d3f8c7ee..07f181a18bc6 100644 --- a/packages/job_execution/setup.cfg +++ b/packages/job_execution/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-execution url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst index a6c336b703eb..fcf169290c80 100644 --- a/packages/job_metrics/HISTORY.rst +++ b/packages/job_metrics/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg index 680449b2a0cd..32518060c5b8 100644 --- a/packages/job_metrics/setup.cfg +++ b/packages/job_metrics/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-job-metrics url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst index d8b13be9b472..2d194123a23d 100644 --- a/packages/navigation/HISTORY.rst +++ b/packages/navigation/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg index f7d62ad9d5f0..5dc986acc51e 100644 --- a/packages/navigation/setup.cfg +++ b/packages/navigation/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-navigation url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst index adef5f150781..c3f84ab9a2e4 100644 --- a/packages/objectstore/HISTORY.rst +++ b/packages/objectstore/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg index 62de50b0faa5..b427a9df5084 100644 --- a/packages/objectstore/setup.cfg +++ b/packages/objectstore/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-objectstore url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/schema/HISTORY.rst b/packages/schema/HISTORY.rst index af64937b2fa9..c91e41d9db21 100644 --- a/packages/schema/HISTORY.rst +++ b/packages/schema/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg index 9d56cf619586..4593c24a41bd 100644 --- a/packages/schema/setup.cfg +++ b/packages/schema/setup.cfg @@ -26,7 +26,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-schema url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst index b9fecf917c52..53e071811a62 100644 --- a/packages/selenium/HISTORY.rst +++ b/packages/selenium/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg index a8098a8a53f0..be91d8691aed 100644 --- a/packages/selenium/setup.cfg +++ b/packages/selenium/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-selenium url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst index eb12be6502e8..8ac07b920d08 100644 --- a/packages/test_api/HISTORY.rst +++ b/packages/test_api/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg index 04ec532236df..b688a73d90e6 100644 --- a/packages/test_api/setup.cfg +++ b/packages/test_api/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-api url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/test_base/HISTORY.rst b/packages/test_base/HISTORY.rst index 18801becae8d..7a62d60acece 100644 --- a/packages/test_base/HISTORY.rst +++ b/packages/test_base/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg index 31cc101d333a..746e852a7179 100644 --- a/packages/test_base/setup.cfg +++ b/packages/test_base/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-base url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/test_driver/HISTORY.rst b/packages/test_driver/HISTORY.rst index d3bdb4fba374..241677dbb7bd 100644 --- a/packages/test_driver/HISTORY.rst +++ b/packages/test_driver/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg index 46e9a899dc3b..7824a38041e4 100644 --- a/packages/test_driver/setup.cfg +++ b/packages/test_driver/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-test-driver url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/tool_shed/HISTORY.rst b/packages/tool_shed/HISTORY.rst index af64937b2fa9..c91e41d9db21 100644 --- a/packages/tool_shed/HISTORY.rst +++ b/packages/tool_shed/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg index b81533d0fbb1..c35a318bb861 100644 --- a/packages/tool_shed/setup.cfg +++ b/packages/tool_shed/setup.cfg @@ -26,7 +26,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-shed url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/tool_util/HISTORY.rst b/packages/tool_util/HISTORY.rst index 60401be88557..e2277c14b57a 100644 --- a/packages/tool_util/HISTORY.rst +++ b/packages/tool_util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg index 2ba705ba18ee..89401e3c1853 100644 --- a/packages/tool_util/setup.cfg +++ b/packages/tool_util/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tool-util url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/tours/HISTORY.rst b/packages/tours/HISTORY.rst index a280f49247be..529a153bc66f 100644 --- a/packages/tours/HISTORY.rst +++ b/packages/tours/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg index 2feedaf8e86e..6708397e5b17 100644 --- a/packages/tours/setup.cfg +++ b/packages/tours/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-tours url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/util/HISTORY.rst b/packages/util/HISTORY.rst index 8d40bda535df..00a1302072dd 100644 --- a/packages/util/HISTORY.rst +++ b/packages/util/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg index a2c020cc0119..88c53964d4d2 100644 --- a/packages/util/setup.cfg +++ b/packages/util/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-util url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/web_apps/HISTORY.rst b/packages/web_apps/HISTORY.rst index 7ff6c3bac1f1..036e653138e3 100644 --- a/packages/web_apps/HISTORY.rst +++ b/packages/web_apps/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg index 52ba906f16c5..8c4afda68e9e 100644 --- a/packages/web_apps/setup.cfg +++ b/packages/web_apps/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-apps url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/web_framework/HISTORY.rst b/packages/web_framework/HISTORY.rst index 6dddb988e61b..1929e3a2dcb3 100644 --- a/packages/web_framework/HISTORY.rst +++ b/packages/web_framework/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg index 8cdd12042fc0..f00c78fe69d6 100644 --- a/packages/web_framework/setup.cfg +++ b/packages/web_framework/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-framework url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True diff --git a/packages/web_stack/HISTORY.rst b/packages/web_stack/HISTORY.rst index b6b5b2a2fd6f..d967ec51dedc 100644 --- a/packages/web_stack/HISTORY.rst +++ b/packages/web_stack/HISTORY.rst @@ -3,6 +3,12 @@ History .. to_doc +----------- +23.2.2.dev0 +----------- + + + ------------------- 23.2.1 (2024-02-21) ------------------- diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg index 1872a6050e97..043620358b0f 100644 --- a/packages/web_stack/setup.cfg +++ b/packages/web_stack/setup.cfg @@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst long_description_content_type = text/x-rst name = galaxy-web-stack url = https://github.com/galaxyproject/galaxy -version = 23.2.1 +version = 23.2.2.dev0 [options] include_package_data = True