diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/CHANGELOG.md b/workflows/scRNAseq/fastq-to-matrix-10x/CHANGELOG.md
index 72882e11ef..246b2d76ba 100644
--- a/workflows/scRNAseq/fastq-to-matrix-10x/CHANGELOG.md
+++ b/workflows/scRNAseq/fastq-to-matrix-10x/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.6.4] - 2025-10-13
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4`
+
 ## [0.6.3] - 2025-06-09
 
 ### Automatic update
diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex.ga b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex.ga
index 4e7b41c31c..7fac77427b 100644
--- a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex.ga
+++ b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex.ga
@@ -53,7 +53,7 @@
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                             "top": 0
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                         "id": 6,
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@@ -630,15 +630,15 @@
                                 "output_name": "stats"
                             }
                         },
-                        "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
+                        "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy4",
                         "tool_shed_repository": {
-                            "changeset_revision": "31c42a2c02d3",
+                            "changeset_revision": "e4dd4c0622f6",
                             "name": "multiqc",
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
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-                        "tool_version": "1.27+galaxy3",
+                        "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"png_plots\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_version": "1.27+galaxy4",
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@@ -836,7 +836,7 @@
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@@ -863,7 +863,7 @@
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@@ -890,7 +890,7 @@
                                         "top": 249
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@@ -1317,7 +1317,7 @@
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@@ -1333,7 +1333,7 @@
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@@ -1677,7 +1677,7 @@
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@@ -1704,7 +1704,7 @@
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-                        "tool_state": "{\"optional\": false, \"tag\": null, \"collection_type\": \"list\"}",
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@@ -2131,7 +2131,7 @@
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@@ -2202,7 +2202,7 @@
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 }
\ No newline at end of file
diff --git a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3.ga b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3.ga
index a08715a045..c17ad108bd 100644
--- a/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3.ga
+++ b/workflows/scRNAseq/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3.ga
@@ -53,7 +53,7 @@
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@@ -294,7 +294,7 @@
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@@ -336,15 +336,15 @@
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             "tool_shed_repository": {
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 }
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