From 18689c3f381865c4ba911c2d0e6286341d3737f4 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Wed, 18 Sep 2024 14:54:01 +1000 Subject: [PATCH] Add some size rules --- tools.yml | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/tools.yml b/tools.yml index 244b3a0..56b7060 100644 --- a/tools.yml +++ b/tools.yml @@ -306,7 +306,10 @@ tools: toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_multijoin_tool/.*: mem: 8 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/.*: - mem: 10 + rules: + - id: tp_sort_header_tool_large_input_rule + if: input_size > 0.8 + mem: 10 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/.*: mem: 12 toolshed.g2.bx.psu.edu/repos/bgruening/tgsgapcloser/tgsgapcloser/.*: @@ -422,9 +425,14 @@ tools: cores: 6 mem: 20 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS.*: - mem: 10 + rules: + - id: EMBOSS_large_input_rule + if: input_size > 0.6 + mem: 10 'toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: fuzztran39/.*': mem: 10 + 'toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: needle56/.*:': + mem: 10 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/.*: mem: 7.6 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_deinterlacer/fastq_paired_end_deinterlacer/.*: @@ -1154,8 +1162,6 @@ tools: cores: 7 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/.*: cores: 2 - toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools.*: - mem: 12 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/.*: mem: 40 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/.*: @@ -1353,8 +1359,6 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/.*: cores: 10 mem: 40 - toolshed.g2.bx.psu.edu/repos/iuc/getorganelle/get_organelle_from_reads/.*: - mem: 70 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/.*: mem: 24 toolshed.g2.bx.psu.edu/repos/iuc/gtdbtk_classify_wf/gtdbtk_classify_wf/.*: